Wall clock time and date at job start Sat Mar 6 2021 09:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99914 * 2 1 4 4 C 1.52995 * 112.85268 * 66.01982 * 3 2 1 5 5 F 1.39903 * 109.46853 * 283.56368 * 4 3 2 6 6 F 1.39903 * 109.47171 * 43.56198 * 4 3 2 7 7 F 1.39902 * 109.47330 * 163.56564 * 4 3 2 8 8 C 1.53782 * 113.61199 * 294.81793 * 3 2 1 9 9 C 1.53781 * 87.08217 * 270.80248 * 8 3 2 10 10 H 1.08997 * 113.61330 * 219.93881 * 9 8 3 11 11 C 1.53001 * 113.61397 * 89.11545 * 9 8 3 12 12 O 1.45200 * 109.47173 * 174.99619 * 11 9 8 13 13 C 1.34795 * 117.00157 * 179.97438 * 12 11 9 14 14 O 1.21566 * 119.99809 * 0.02562 * 13 12 11 15 15 C 1.47027 * 120.00289 * 180.02562 * 13 12 11 16 16 C 1.36102 * 123.47415 * 359.70780 * 15 13 12 17 17 S 1.70444 * 110.80820 * 179.85529 * 16 15 13 18 18 C 1.75508 * 92.45627 * 0.34849 * 17 16 15 19 19 C 1.50699 * 124.70221 * 179.79991 * 18 17 16 20 20 O 1.42899 * 109.46911 * 120.00196 * 19 18 17 21 21 Si 1.86295 * 109.47039 * 0.02562 * 19 18 17 22 22 C 1.32746 * 110.59626 * 359.79945 * 18 17 16 23 23 C 1.53778 * 87.08353 * 334.56934 * 9 8 3 24 24 H 1.09010 * 109.47112 * 302.48518 * 1 2 3 25 25 H 1.08997 * 109.47453 * 62.48194 * 1 2 3 26 26 H 1.09001 * 109.47184 * 182.49082 * 1 2 3 27 27 H 1.08997 * 113.61287 * 156.25411 * 8 3 2 28 28 H 1.08998 * 113.68775 * 25.36593 * 8 3 2 29 29 H 1.08997 * 109.46905 * 55.00309 * 11 9 8 30 30 H 1.08996 * 109.47248 * 295.00131 * 11 9 8 31 31 H 1.08004 * 124.59811 * 359.97438 * 16 15 13 32 32 H 1.08996 * 109.46991 * 239.99689 * 19 18 17 33 33 H 0.96696 * 114.00366 * 180.02562 * 20 19 18 34 34 H 1.48499 * 110.00202 * 60.00101 * 21 19 18 35 35 H 1.48499 * 109.99933 * 181.31669 * 21 19 18 36 36 H 1.07995 * 123.45586 * 179.97438 * 22 18 17 37 37 H 1.09006 * 113.61678 * 139.97897 * 23 9 8 38 38 H 1.08999 * 113.61541 * 270.88384 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7284 2.0814 1.2882 5 9 0.4117 2.5538 1.2694 6 9 1.9052 1.2368 2.3894 7 9 2.6106 3.1630 1.3836 8 6 1.7204 2.1087 -1.2789 9 6 2.9972 1.4844 -1.8662 10 1 3.5924 2.1813 -2.4562 11 6 2.7553 0.1546 -2.5832 12 8 3.9903 -0.2936 -3.2014 13 6 3.9484 -1.4589 -3.8776 14 8 2.9077 -2.0832 -3.9489 15 6 5.1613 -1.9750 -4.5290 16 6 6.3607 -1.3324 -4.4991 17 16 7.5426 -2.2163 -5.3517 18 6 6.4012 -3.4813 -5.7728 19 6 6.7366 -4.7024 -6.5898 20 8 6.4846 -5.8771 -5.8162 21 14 8.5352 -4.6515 -7.0727 22 6 5.2015 -3.2134 -5.2718 23 6 3.4899 1.3230 -0.4185 24 1 -0.3634 0.5520 0.8669 25 1 -0.3634 0.4748 -0.9114 26 1 -0.3633 -1.0267 0.0447 27 1 1.7858 3.1880 -1.1409 28 1 0.8087 1.8020 -1.7915 29 1 1.9929 0.2889 -3.3504 30 1 2.4184 -0.5906 -1.8626 31 1 6.5399 -0.3910 -4.0009 32 1 6.1192 -4.7194 -7.4879 33 1 6.6792 -6.7029 -6.2801 34 1 9.3872 -4.6283 -5.8566 35 1 8.8711 -5.8342 -7.9055 36 1 4.3433 -3.8552 -5.4062 37 1 4.0066 0.3807 -0.2356 38 1 4.0390 2.1874 -0.0452 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6894092_17321610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:14:19 Heat of formation + Delta-G solvation = -234.804076 kcal Electronic energy + Delta-G solvation = -29290.741575 eV Core-core repulsion = 24392.756741 eV Total energy + Delta-G solvation = -4897.984834 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.067 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.27449 -48.80387 -48.74601 -41.84612 -41.07571 -39.01396 -37.84447 -37.29557 -36.88124 -32.24993 -30.69510 -28.28269 -27.67086 -27.00915 -26.79956 -25.76052 -23.37110 -22.26003 -20.80938 -20.51385 -19.79292 -19.56186 -19.28259 -18.74856 -18.64937 -18.35010 -17.57719 -17.29178 -17.17525 -16.51715 -16.23003 -15.90128 -15.68594 -15.66291 -15.62600 -15.30430 -15.15722 -14.96566 -14.88582 -14.80759 -14.28536 -14.22519 -14.09940 -13.92471 -13.72442 -13.65495 -13.30985 -13.17691 -12.79380 -12.74833 -12.46060 -12.37471 -12.17866 -12.02509 -11.70647 -11.67792 -11.46423 -10.82556 -10.64840 -9.99248 -9.57373 -5.04822 -0.45262 0.29530 0.59981 0.65235 1.18961 1.49618 1.51954 1.59269 1.90335 1.95166 2.06821 2.54510 2.61102 2.86903 3.24307 3.28236 3.32478 3.44458 3.62272 3.66007 3.89379 4.02730 4.19755 4.20655 4.22375 4.27807 4.36592 4.42339 4.46610 4.50074 4.60497 4.67487 4.70990 4.75767 4.81251 4.91466 4.98819 5.11281 5.30293 5.68844 6.53786 6.62013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.350 6.350 3 C 0.030 3.970 4 C 0.434 3.566 5 F -0.184 7.184 6 F -0.189 7.189 7 F -0.174 7.174 8 C -0.134 4.134 9 C -0.090 4.090 10 H 0.128 0.872 11 C 0.076 3.924 12 O -0.345 6.345 13 C 0.530 3.470 14 O -0.541 6.541 15 C -0.181 4.181 16 C -0.163 4.163 17 S 0.268 5.732 18 C -0.213 4.213 19 C -0.048 4.048 20 O -0.557 6.557 21 Si 0.725 3.275 22 C -0.072 4.072 23 C -0.112 4.112 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.207 0.793 32 H 0.106 0.894 33 H 0.399 0.601 34 H -0.270 1.270 35 H -0.257 1.257 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 3.605 -5.744 7.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.268 6.268 3 C -0.012 4.012 4 C 0.380 3.620 5 F -0.166 7.166 6 F -0.170 7.170 7 F -0.155 7.155 8 C -0.171 4.171 9 C -0.108 4.108 10 H 0.146 0.854 11 C 0.003 3.997 12 O -0.262 6.262 13 C 0.375 3.625 14 O -0.433 6.433 15 C -0.197 4.197 16 C -0.301 4.301 17 S 0.534 5.466 18 C -0.329 4.329 19 C -0.159 4.159 20 O -0.367 6.367 21 Si 0.626 3.374 22 C -0.101 4.101 23 C -0.149 4.149 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.149 0.851 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.223 0.777 32 H 0.123 0.877 33 H 0.250 0.750 34 H -0.196 1.196 35 H -0.181 1.181 36 H 0.158 0.842 37 H 0.107 0.893 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.878 3.549 -5.535 8.819 hybrid contribution -2.937 -1.358 1.267 3.475 sum 2.941 2.191 -4.267 5.627 Atomic orbital electron populations 1.23264 0.78800 1.04991 1.01974 1.88083 1.22063 1.22768 1.93870 1.24275 1.00910 0.86211 0.89845 1.21474 0.74153 0.78698 0.87724 1.93177 1.37189 1.89370 1.96838 1.93189 1.95014 1.71140 1.57682 1.93173 1.68780 1.56950 1.96593 1.23654 0.99711 1.01740 0.92019 1.22040 0.98180 0.95427 0.95172 0.85423 1.23107 0.83583 0.96273 0.96785 1.86472 1.39522 1.37206 1.62973 1.20661 0.87830 0.78589 0.75395 1.90855 1.33533 1.59072 1.59812 1.19321 0.92547 0.98907 1.08930 1.26387 0.96484 1.05585 1.01693 1.82967 1.09193 1.09904 1.44498 1.23824 0.97346 1.02580 1.09144 1.24384 1.13568 0.82769 0.95141 1.86567 1.88837 1.16514 1.44827 0.94537 0.71961 0.89948 0.80985 1.20916 0.98386 0.94504 0.96244 1.23369 0.90373 1.05920 0.95252 0.93202 0.91235 0.87507 0.85131 0.87970 0.90434 0.90561 0.77650 0.87656 0.74956 1.19593 1.18126 0.84182 0.89299 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 10.43 113.37 1.18 1.18 16 2 O -0.35 -1.08 8.36 -148.98 -1.25 -2.33 16 3 C 0.03 -0.01 0.85 -10.27 -0.01 -0.02 16 4 C 0.43 1.18 2.51 71.98 0.18 1.36 16 5 F -0.18 -0.60 15.24 44.97 0.69 0.09 16 6 F -0.19 -1.35 17.09 44.97 0.77 -0.59 16 7 F -0.17 -0.32 15.82 44.97 0.71 0.39 16 8 C -0.13 0.72 6.52 31.12 0.20 0.92 16 9 C -0.09 0.40 4.21 -10.27 -0.04 0.36 16 10 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 11 C 0.08 0.10 5.06 71.98 0.36 0.47 16 12 O -0.35 -1.33 9.87 -57.07 -0.56 -1.89 16 13 C 0.53 4.56 7.92 70.13 0.56 5.12 16 14 O -0.54 -8.17 16.59 19.62 0.33 -7.85 16 15 C -0.18 -0.91 5.98 -19.88 -0.12 -1.03 16 16 C -0.16 0.24 10.55 67.32 0.71 0.95 16 17 S 0.27 -0.88 20.18 -56.49 -1.14 -2.02 16 18 C -0.21 -0.32 5.72 24.51 0.14 -0.18 16 19 C -0.05 0.08 2.94 71.24 0.21 0.29 16 20 O -0.56 -0.93 12.82 -148.98 -1.91 -2.84 16 21 Si 0.73 -3.10 30.91 68.60 2.12 -0.98 16 22 C -0.07 -0.42 9.91 22.68 0.22 -0.19 16 23 C -0.11 0.32 6.89 31.12 0.21 0.54 16 24 H 0.05 0.02 6.25 -2.38 -0.01 0.00 16 25 H 0.07 -0.26 6.76 -2.39 -0.02 -0.28 16 26 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.13 -1.10 8.06 -2.39 -0.02 -1.12 16 28 H 0.10 -0.65 6.70 -2.39 -0.02 -0.67 16 29 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.08 0.38 6.12 -2.39 -0.01 0.37 16 31 H 0.21 -1.40 8.02 -2.91 -0.02 -1.42 16 32 H 0.11 -0.59 7.96 -2.39 -0.02 -0.60 16 33 H 0.40 -2.77 8.74 -74.06 -0.65 -3.42 16 34 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 35 H -0.26 0.28 7.11 99.48 0.71 0.99 16 36 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.09 -0.05 8.10 -2.38 -0.02 -0.07 16 38 H 0.13 -0.79 7.01 -2.39 -0.02 -0.81 16 Total: 0.00 -19.24 346.77 4.09 -15.15 By element: Atomic # 1 Polarization: -7.42 SS G_CDS: 0.53 Total: -6.89 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 3.81 Total: 9.75 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -3.39 Total: -14.91 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 2.17 Total: -0.10 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.12 Total: -0.98 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -1.14 Total: -2.02 kcal Total: -19.24 4.09 -15.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6894092_17321610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.655 kcal (2) G-P(sol) polarization free energy of solvation -19.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds