Wall clock time and date at job start Sat Mar 6 2021 08:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38345 * 119.92112 * 244.71944 * 4 2 1 6 6 C 1.38391 * 120.29838 * 179.76322 * 5 4 2 7 7 C 1.37920 * 120.15164 * 0.52115 * 6 5 4 8 8 C 1.39649 * 119.84589 * 359.74232 * 7 6 5 9 9 C 1.47728 * 120.14899 * 179.97438 * 8 7 6 10 10 O 1.21462 * 120.00529 * 180.02562 * 9 8 7 11 11 O 1.34711 * 119.99786 * 0.02562 * 9 8 7 12 12 C 1.45207 * 117.00146 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47060 * 179.97438 * 12 11 9 14 14 H 1.08991 * 112.85202 * 316.19242 * 13 12 11 15 15 C 1.53786 * 113.61285 * 87.50323 * 13 12 11 16 16 C 1.53786 * 87.08048 * 139.97579 * 15 13 12 17 17 H 1.09002 * 113.61024 * 89.11788 * 16 15 13 18 18 O 1.42901 * 113.61166 * 220.01357 * 16 15 13 19 19 C 1.53774 * 87.08050 * 334.56654 * 16 15 13 20 20 C 1.37965 * 119.92532 * 65.00624 * 4 2 1 21 21 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 22 22 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 23 23 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 24 24 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 25 25 H 1.07997 * 119.84835 * 0.03362 * 5 4 2 26 26 H 1.07998 * 119.92427 * 180.25782 * 6 5 4 27 27 H 1.08001 * 120.07579 * 179.71464 * 7 6 5 28 28 H 1.09000 * 109.46674 * 299.99684 * 12 11 9 29 29 H 1.08992 * 109.46883 * 59.99566 * 12 11 9 30 30 H 1.09004 * 113.61011 * 254.52362 * 15 13 12 31 31 H 1.08993 * 113.61727 * 25.43006 * 15 13 12 32 32 H 0.96701 * 114.00456 * 277.49631 * 18 16 15 33 33 H 1.08997 * 113.61530 * 270.88070 * 19 16 15 34 34 H 1.09005 * 113.69212 * 139.99017 * 19 16 15 35 35 H 1.08002 * 120.07421 * 359.94092 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6440 -0.0114 2.1884 6 6 3.1046 -0.6549 3.3237 7 6 2.8647 -2.0012 3.5024 8 6 2.1506 -2.7141 2.5369 9 6 1.8904 -4.1565 2.7212 10 8 1.2694 -4.7741 1.8796 11 8 2.3418 -4.7870 3.8228 12 6 2.0498 -6.2048 3.9372 13 6 2.6381 -6.7429 5.2429 14 1 3.6481 -6.3802 5.4333 15 6 1.6935 -6.6021 6.4483 16 6 2.1696 -7.9978 6.8845 17 1 3.0513 -7.9779 7.5252 18 8 1.1243 -8.8232 7.4024 19 6 2.4895 -8.2650 5.4044 20 6 1.6842 -2.0576 1.3966 21 1 -0.3934 0.4418 0.7650 22 1 1.7924 -0.5139 -0.8899 23 1 1.5616 2.4678 -1.2086 24 1 1.5878 2.4586 1.2241 25 1 2.8380 1.0421 2.0515 26 1 3.6568 -0.1024 4.0695 27 1 3.2287 -2.5032 4.3867 28 1 0.9701 -6.3546 3.9358 29 1 2.4913 -6.7359 3.0940 30 1 1.9805 -5.8077 7.1374 31 1 0.6391 -6.5662 6.1749 32 1 0.9186 -8.6598 8.3331 33 1 1.6526 -8.6837 4.8455 34 1 3.4187 -8.8133 5.2491 35 1 1.1309 -2.6028 0.6463 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_7081094_11354868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:04:41 Heat of formation + Delta-G solvation = -111.505226 kcal Electronic energy + Delta-G solvation = -19339.430365 eV Core-core repulsion = 16077.077089 eV Total energy + Delta-G solvation = -3262.353276 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.69406 -40.60833 -40.01723 -37.77940 -37.41659 -36.01147 -33.11211 -32.32193 -29.68707 -26.91577 -26.84093 -25.64111 -23.41434 -22.99708 -21.74744 -20.64399 -19.15200 -18.68338 -18.13001 -17.70963 -17.43407 -17.26327 -16.49066 -16.39359 -16.22181 -15.58509 -15.31638 -15.09611 -14.96514 -14.24413 -14.15489 -13.84528 -13.54901 -13.45144 -13.13713 -12.91162 -12.82053 -12.46681 -12.18187 -12.12703 -11.75240 -11.70302 -11.52404 -11.27587 -10.83330 -10.69901 -10.21161 -10.06821 -5.04255 -0.44211 0.14294 1.17313 1.47527 1.50350 1.54535 1.90112 2.59237 3.10600 3.27955 3.33832 3.43551 3.46965 3.55258 3.74176 3.76722 3.82118 3.92554 4.09487 4.12144 4.17748 4.29261 4.36358 4.44638 4.56196 4.65496 4.67972 4.68523 4.78811 4.86891 5.01352 5.12390 5.15063 5.20488 5.27004 5.42294 5.64926 6.33168 6.63759 6.73468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.076 4.076 3 Si 0.690 3.310 4 C -0.130 4.130 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.056 4.056 8 C -0.126 4.126 9 C 0.509 3.491 10 O -0.502 6.502 11 O -0.351 6.351 12 C 0.080 3.920 13 C -0.111 4.111 14 H 0.107 0.893 15 C -0.165 4.165 16 C 0.076 3.924 17 H 0.085 0.915 18 O -0.560 6.560 19 C -0.120 4.120 20 C -0.028 4.028 21 H 0.377 0.623 22 H 0.121 0.879 23 H -0.255 1.255 24 H -0.259 1.259 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.381 0.619 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 2.591 3.936 6.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.186 4.186 3 Si 0.590 3.410 4 C -0.130 4.130 5 C -0.100 4.100 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.127 4.127 9 C 0.353 3.647 10 O -0.390 6.390 11 O -0.268 6.268 12 C 0.007 3.993 13 C -0.129 4.129 14 H 0.125 0.875 15 C -0.202 4.202 16 C 0.017 3.983 17 H 0.103 0.897 18 O -0.365 6.365 19 C -0.158 4.158 20 C -0.046 4.046 21 H 0.224 0.776 22 H 0.139 0.861 23 H -0.180 1.180 24 H -0.184 1.184 25 H 0.152 0.848 26 H 0.156 0.844 27 H 0.159 0.841 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.228 0.772 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.331 2.652 2.535 5.676 hybrid contribution -1.107 -0.102 1.071 1.543 sum 3.224 2.550 3.606 5.468 Atomic orbital electron populations 1.86637 1.17461 1.79920 1.49308 1.25088 0.84167 1.11175 0.98159 0.94990 0.91470 0.74084 0.80410 1.20253 1.00815 0.94294 0.97673 1.21396 0.95317 0.99977 0.93300 1.21163 1.00823 0.94421 0.97996 1.21563 0.93939 0.94185 0.97747 1.19158 1.05353 0.90103 0.98077 1.21138 0.76089 0.88128 0.79319 1.90869 1.37678 1.67520 1.42971 1.86509 1.72259 1.25836 1.42179 1.23115 1.01098 0.76804 0.98325 1.22371 1.00871 0.96231 0.93429 0.87457 1.23799 1.00405 0.98268 0.97754 1.23282 0.90398 0.89843 0.94733 0.89671 1.86532 1.55815 1.62939 1.31249 1.23072 1.03119 0.94435 0.95151 1.21149 0.94592 0.93449 0.95412 0.77581 0.86098 1.17995 1.18378 0.84833 0.84413 0.84083 0.90662 0.90589 0.90688 0.89041 0.77183 0.88694 0.89987 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.62 12.83 -35.23 -0.45 -1.08 16 2 C -0.08 0.04 2.80 36.01 0.10 0.14 16 3 Si 0.69 -1.21 29.87 -169.99 -5.08 -6.29 16 4 C -0.13 0.03 5.35 -104.68 -0.56 -0.53 16 5 C -0.08 0.13 8.67 -39.49 -0.34 -0.21 16 6 C -0.13 0.24 10.03 -39.64 -0.40 -0.16 16 7 C -0.06 0.03 9.62 -39.17 -0.38 -0.34 16 8 C -0.13 -0.20 5.87 -104.98 -0.62 -0.82 16 9 C 0.51 1.70 7.90 34.61 0.27 1.97 16 10 O -0.50 -3.09 16.14 -19.24 -0.31 -3.40 16 11 O -0.35 -0.64 9.47 -40.52 -0.38 -1.03 16 12 C 0.08 0.06 5.31 37.16 0.20 0.26 16 13 C -0.11 0.12 4.02 -89.81 -0.36 -0.24 16 14 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 15 C -0.16 0.17 7.46 -25.91 -0.19 -0.03 16 16 C 0.08 -0.07 5.21 -25.92 -0.14 -0.21 16 17 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 18 O -0.56 -0.31 13.67 -35.23 -0.48 -0.79 16 19 C -0.12 0.10 7.47 -25.92 -0.19 -0.10 16 20 C -0.03 -0.04 9.23 -39.17 -0.36 -0.40 16 21 H 0.38 -0.68 8.70 45.56 0.40 -0.29 16 22 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 23 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 24 H -0.26 0.05 7.01 56.52 0.40 0.44 16 25 H 0.13 -0.47 4.82 -52.49 -0.25 -0.72 16 26 H 0.14 -0.58 8.06 -52.49 -0.42 -1.00 16 27 H 0.14 -0.28 7.61 -52.49 -0.40 -0.68 16 28 H 0.08 0.10 7.84 -51.93 -0.41 -0.31 16 29 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 30 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 31 H 0.09 0.00 7.90 -51.93 -0.41 -0.41 16 32 H 0.38 -1.33 9.12 45.56 0.42 -0.92 16 33 H 0.09 0.01 8.10 -51.93 -0.42 -0.41 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.14 0.35 7.65 -52.49 -0.40 -0.05 16 LS Contribution 303.50 15.07 4.57 4.57 Total: 0.00 -7.64 303.50 -8.73 -16.37 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: -3.63 Total: -7.69 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.97 Total: -0.66 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -1.63 Total: -6.30 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.08 Total: -6.29 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -7.64 -8.73 -16.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7081094_11354868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.139 kcal (2) G-P(sol) polarization free energy of solvation -7.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds