Wall clock time and date at job start Sat Mar 6 2021 09:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.47164 * 2 1 4 4 C 1.50710 * 109.46915 * 240.00294 * 2 1 3 5 5 C 1.38336 * 119.92595 * 120.02539 * 4 2 1 6 6 C 1.38390 * 120.30536 * 179.97438 * 5 4 2 7 7 C 1.37923 * 120.14989 * 359.71796 * 6 5 4 8 8 C 1.39652 * 119.84172 * 0.53079 * 7 6 5 9 9 C 1.47732 * 120.14636 * 179.73926 * 8 7 6 10 10 O 1.21463 * 119.99887 * 179.72474 * 9 8 7 11 11 O 1.34712 * 119.99977 * 359.73230 * 9 8 7 12 12 C 1.45192 * 117.00114 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47499 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47631 * 179.97438 * 13 12 11 15 15 O 1.42980 * 109.47096 * 299.89183 * 13 12 11 16 16 C 1.43094 * 113.76463 * 178.66895 * 15 13 12 17 17 C 1.53263 * 109.03354 * 302.20552 * 16 15 13 18 18 H 1.08993 * 109.57744 * 294.53597 * 17 16 15 19 19 N 1.46500 * 109.57564 * 174.27595 * 17 16 15 20 20 C 1.34524 * 124.45772 * 299.70213 * 19 17 16 21 21 O 1.21448 * 125.71636 * 0.03477 * 20 19 17 22 22 C 1.47819 * 108.57787 * 179.90438 * 20 19 17 23 23 C 1.40951 * 105.87930 * 0.34755 * 22 20 19 24 24 C 1.38566 * 119.81969 * 179.80165 * 23 22 20 25 25 C 1.38612 * 119.72107 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.45744 * 0.02562 * 25 24 23 27 27 C 1.38566 * 134.29828 * 180.13181 * 22 20 19 28 28 C 1.34516 * 124.46171 * 120.00025 * 19 17 16 29 29 O 1.21455 * 125.70675 * 359.94546 * 28 19 17 30 30 C 1.53262 * 108.84096 * 54.47095 * 17 16 15 31 31 O 1.42975 * 109.47169 * 59.99815 * 13 12 11 32 32 C 1.37965 * 119.92362 * 299.99892 * 4 2 1 33 33 H 0.96703 * 113.99757 * 59.99682 * 1 2 3 34 34 H 1.08991 * 109.47265 * 120.00565 * 2 1 3 35 35 H 1.48498 * 110.00271 * 298.68120 * 3 2 1 36 36 H 1.48492 * 109.99829 * 60.00399 * 3 2 1 37 37 H 1.08005 * 119.85059 * 359.97273 * 5 4 2 38 38 H 1.08001 * 119.92462 * 179.97438 * 6 5 4 39 39 H 1.08000 * 120.08162 * 180.30164 * 7 6 5 40 40 H 1.09006 * 109.46977 * 59.99886 * 12 11 9 41 41 H 1.09001 * 109.47211 * 300.00075 * 12 11 9 42 42 H 1.09002 * 109.55970 * 182.31334 * 16 15 13 43 43 H 1.09000 * 109.55444 * 62.09789 * 16 15 13 44 44 H 1.07992 * 120.13666 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.77246 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.76517 * 180.02562 * 26 25 24 47 47 H 1.07993 * 120.14459 * 0.28045 * 27 22 20 48 48 H 1.09002 * 109.56389 * 65.31270 * 30 17 16 49 49 H 1.09005 * 109.55872 * 185.52930 * 30 17 16 50 50 H 1.08003 * 120.07712 * 0.02562 * 32 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7269 -0.0368 -2.1399 6 6 3.1929 -0.6816 -3.2723 7 6 2.8712 -2.0035 -3.4985 8 6 2.0641 -2.6881 -2.5873 9 6 1.7106 -4.1025 -2.8259 10 8 1.0126 -4.6967 -2.0290 11 8 2.1625 -4.7332 -3.9271 12 6 1.7761 -6.1225 -4.0964 13 6 2.3796 -6.6654 -5.3932 14 1 2.0899 -7.7085 -5.5201 15 8 1.8969 -5.9004 -6.5004 16 6 2.4297 -6.3132 -7.7627 17 6 3.9589 -6.2217 -7.7137 18 1 4.2591 -5.1795 -7.6058 19 7 4.5232 -6.7697 -8.9495 20 6 4.3490 -8.0357 -9.3700 21 8 3.7084 -8.8920 -8.7945 22 6 5.0652 -8.2091 -10.6514 23 6 5.6648 -6.9642 -10.9296 24 6 6.4215 -6.8055 -12.0795 25 6 6.5837 -7.8734 -12.9483 26 6 5.9956 -9.0942 -12.6753 27 6 5.2353 -9.2675 -11.5294 28 6 5.2885 -6.0750 -9.8104 29 8 5.6154 -4.9116 -9.6886 30 6 4.4650 -7.0314 -6.5148 31 8 3.8050 -6.5713 -5.3316 32 6 1.5970 -2.0313 -1.4474 33 1 -0.3933 0.4418 -0.7651 34 1 1.7923 -0.5139 0.8899 35 1 1.5879 2.4586 -1.2242 36 1 1.5616 2.4678 1.2085 37 1 2.9856 0.9972 -1.9654 38 1 3.8134 -0.1496 -3.9783 39 1 3.2395 -2.5071 -4.3801 40 1 0.6894 -6.1943 -4.1429 41 1 2.1431 -6.7071 -3.2527 42 1 2.0502 -5.6615 -8.5497 43 1 2.1320 -7.3419 -7.9655 44 1 6.8835 -5.8541 -12.2975 45 1 7.1736 -7.7507 -13.8445 46 1 6.1297 -9.9189 -13.3597 47 1 4.7776 -10.2233 -11.3217 48 1 4.2443 -8.0877 -6.6685 49 1 5.5414 -6.8948 -6.4106 50 1 0.9758 -2.5561 -0.7367 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7081094_13594054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:15:47 Heat of formation + Delta-G solvation = -162.945349 kcal Electronic energy + Delta-G solvation = -40475.051977 eV Core-core repulsion = 34980.337382 eV Total energy + Delta-G solvation = -5494.714596 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.133 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.71331 -41.90555 -41.20674 -40.28797 -39.95069 -39.47501 -37.85388 -37.64084 -37.18522 -37.12310 -34.57546 -33.16164 -32.29736 -32.16471 -31.69551 -29.92624 -27.51600 -26.91191 -26.35485 -26.02604 -25.25862 -23.82963 -23.48969 -22.96269 -22.42760 -21.81876 -20.99912 -19.31884 -19.19115 -18.98839 -18.89904 -18.38694 -17.98334 -17.72665 -17.67244 -17.33596 -17.31081 -17.02502 -16.81813 -16.50009 -16.28549 -16.18890 -16.05938 -15.89789 -15.48952 -15.43227 -15.33183 -15.06792 -14.92069 -14.80571 -14.74267 -14.60482 -14.54506 -14.14516 -13.80633 -13.56901 -13.53265 -13.28561 -13.12981 -12.93960 -12.79587 -12.69584 -12.49375 -12.26176 -12.13594 -11.93137 -11.84229 -11.71152 -11.69912 -11.62147 -10.99223 -10.87333 -10.70821 -10.26053 -10.24787 -10.20107 -10.00844 -4.92164 -1.11541 -0.48208 -0.06268 0.17830 0.86645 0.88510 1.23715 1.33124 1.39556 1.60563 1.61259 1.97601 2.15321 2.20709 2.44131 2.57061 2.59562 3.06685 3.14029 3.21200 3.32770 3.36600 3.43661 3.53408 3.55055 3.67302 3.79526 3.83777 3.91694 3.97898 4.02467 4.03962 4.04511 4.11774 4.14605 4.16442 4.20054 4.24272 4.35678 4.41166 4.44990 4.47272 4.53920 4.68480 4.80265 4.87441 4.87660 5.01508 5.17327 5.18166 5.25017 5.26460 5.27939 5.33393 5.39957 5.65129 5.68868 5.72000 5.91810 6.34261 6.44887 6.49640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.092 4.092 3 Si 0.782 3.218 4 C -0.131 4.131 5 C -0.073 4.073 6 C -0.119 4.119 7 C -0.055 4.055 8 C -0.145 4.145 9 C 0.510 3.490 10 O -0.537 6.537 11 O -0.337 6.337 12 C 0.080 3.920 13 C 0.243 3.757 14 H 0.108 0.892 15 O -0.383 6.383 16 C 0.051 3.949 17 C 0.077 3.923 18 H 0.122 0.878 19 N -0.569 5.569 20 C 0.576 3.424 21 O -0.481 6.481 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.044 4.044 25 C -0.084 4.084 26 C -0.085 4.085 27 C -0.043 4.043 28 C 0.577 3.423 29 O -0.487 6.487 30 C 0.051 3.949 31 O -0.383 6.383 32 C -0.042 4.042 33 H 0.387 0.613 34 H 0.123 0.877 35 H -0.273 1.273 36 H -0.304 1.304 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.154 0.846 45 H 0.176 0.824 46 H 0.176 0.824 47 H 0.155 0.845 48 H 0.075 0.925 49 H 0.116 0.884 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -1.329 -9.615 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.199 4.199 3 Si 0.686 3.314 4 C -0.132 4.132 5 C -0.090 4.090 6 C -0.137 4.137 7 C -0.073 4.073 8 C -0.146 4.146 9 C 0.356 3.644 10 O -0.428 6.428 11 O -0.252 6.252 12 C 0.007 3.993 13 C 0.148 3.852 14 H 0.125 0.875 15 O -0.303 6.303 16 C -0.026 4.026 17 C -0.025 4.025 18 H 0.140 0.860 19 N -0.313 5.313 20 C 0.367 3.633 21 O -0.354 6.354 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.063 4.063 25 C -0.102 4.102 26 C -0.102 4.102 27 C -0.062 4.062 28 C 0.368 3.632 29 O -0.359 6.359 30 C -0.027 4.027 31 O -0.302 6.302 32 C -0.061 4.061 33 H 0.236 0.764 34 H 0.141 0.859 35 H -0.199 1.199 36 H -0.233 1.233 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.164 0.836 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.092 0.908 44 H 0.172 0.828 45 H 0.193 0.807 46 H 0.193 0.807 47 H 0.173 0.827 48 H 0.093 0.907 49 H 0.134 0.866 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.663 -0.612 -8.189 10.575 hybrid contribution -1.555 -0.761 -0.190 1.741 sum 5.108 -1.373 -8.379 9.909 Atomic orbital electron populations 1.86592 1.18631 1.80493 1.50193 1.25449 0.83483 1.12794 0.98192 0.94010 0.89871 0.70690 0.76821 1.20317 1.00553 0.93908 0.98384 1.21638 0.93970 1.00724 0.92717 1.21521 1.00276 0.93785 0.98103 1.21724 0.93016 0.95045 0.97559 1.19175 1.05822 0.90145 0.99422 1.21542 0.76191 0.88163 0.78463 1.90834 1.37228 1.68138 1.46624 1.86625 1.69168 1.27267 1.42177 1.23306 1.01253 0.79026 0.95765 1.23812 0.79761 0.95479 0.86113 0.87455 1.88235 1.66747 1.60394 1.14917 1.23031 0.90439 1.02607 0.86564 1.22572 0.95880 1.01331 0.82722 0.86009 1.46454 1.48565 1.13399 1.22909 1.18737 0.78701 0.80631 0.85193 1.90797 1.38427 1.44886 1.61315 1.20452 1.02763 0.96803 0.96299 1.20437 1.04111 0.94062 0.97639 1.21162 0.93708 1.01265 0.90143 1.21958 0.97286 0.91404 0.99509 1.21964 0.93493 0.99064 0.95701 1.21157 0.95404 0.97731 0.91879 1.18750 0.76079 0.85872 0.82494 1.90827 1.52902 1.16058 1.76134 1.23040 0.99091 0.97780 0.82748 1.88231 1.19386 1.85721 1.36855 1.21066 0.95974 0.94230 0.94823 0.76375 0.85937 1.19939 1.23251 0.82221 0.81420 0.83581 0.87746 0.87626 0.86655 0.90788 0.82830 0.80686 0.80682 0.82725 0.90723 0.86562 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.42 12.76 -148.98 -1.90 -4.32 16 2 C -0.09 -0.03 2.82 71.24 0.20 0.17 16 3 Si 0.78 -2.45 29.78 68.60 2.04 -0.40 16 4 C -0.13 -0.16 5.38 -19.90 -0.11 -0.26 16 5 C -0.07 0.22 8.67 22.33 0.19 0.42 16 6 C -0.12 0.35 10.03 22.23 0.22 0.57 16 7 C -0.06 -0.10 9.62 22.54 0.22 0.11 16 8 C -0.14 -1.00 5.87 -20.10 -0.12 -1.11 16 9 C 0.51 5.45 7.90 70.33 0.56 6.00 16 10 O -0.54 -8.41 16.14 19.96 0.32 -8.09 16 11 O -0.34 -2.89 9.27 -49.94 -0.46 -3.36 16 12 C 0.08 0.37 5.56 71.98 0.40 0.77 16 13 C 0.24 0.86 3.59 71.98 0.26 1.11 16 14 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 15 O -0.38 -2.11 10.45 -122.17 -1.28 -3.39 16 16 C 0.05 0.13 6.33 72.07 0.46 0.59 16 17 C 0.08 0.22 3.08 45.17 0.14 0.36 16 18 H 0.12 0.53 7.59 -2.39 -0.02 0.51 16 19 N -0.57 -1.56 2.53 -739.56 -1.87 -3.43 16 20 C 0.58 1.60 7.35 86.82 0.64 2.24 16 21 O -0.48 -2.99 15.16 -3.55 -0.05 -3.05 16 22 C -0.16 0.14 6.41 -20.00 -0.13 0.02 16 23 C -0.16 0.08 6.41 -20.00 -0.13 -0.05 16 24 C -0.04 0.25 10.09 22.44 0.23 0.48 16 25 C -0.08 0.90 10.04 22.36 0.22 1.12 16 26 C -0.08 0.91 10.04 22.36 0.22 1.14 16 27 C -0.04 0.27 10.09 22.44 0.23 0.49 16 28 C 0.58 2.33 8.02 86.82 0.70 3.03 16 29 O -0.49 -4.52 17.44 -3.57 -0.06 -4.58 16 30 C 0.05 0.13 6.32 72.07 0.46 0.58 16 31 O -0.38 -2.05 10.44 -122.15 -1.28 -3.32 16 32 C -0.04 -0.27 9.15 22.53 0.21 -0.06 16 33 H 0.39 -0.65 8.70 -74.06 -0.64 -1.30 16 34 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 35 H -0.27 0.16 7.11 99.48 0.71 0.86 16 36 H -0.30 -1.58 7.11 99.48 0.71 -0.88 16 37 H 0.16 -1.37 4.86 -2.91 -0.01 -1.38 16 38 H 0.17 -1.48 8.06 -2.91 -0.02 -1.50 16 39 H 0.15 0.12 7.61 -2.91 -0.02 0.09 16 40 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.07 0.20 6.71 -2.39 -0.02 0.18 16 44 H 0.15 -1.24 8.06 -2.91 -0.02 -1.27 16 45 H 0.18 -2.92 8.06 -2.91 -0.02 -2.94 16 46 H 0.18 -2.94 8.06 -2.91 -0.02 -2.96 16 47 H 0.16 -1.36 8.06 -2.91 -0.02 -1.38 16 48 H 0.07 0.20 6.63 -2.39 -0.02 0.18 16 49 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 50 H 0.12 1.16 7.65 -2.91 -0.02 1.14 16 Total: 0.00 -27.24 429.64 0.95 -26.29 By element: Atomic # 1 Polarization: -10.49 SS G_CDS: 0.43 Total: -10.06 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 5.06 Total: 17.71 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -1.87 Total: -3.43 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -4.71 Total: -30.11 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.04 Total: -0.40 kcal Total: -27.24 0.95 -26.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7081094_13594054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.655 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds