Wall clock time and date at job start Sat Mar 6 2021 07:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47791 * 239.99884 * 2 1 3 5 5 O 1.45201 * 109.47214 * 119.99675 * 2 1 3 6 6 C 1.34638 * 116.99939 * 60.00280 * 5 2 1 7 7 O 1.21512 * 119.99889 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99854 * 180.02562 * 6 5 2 9 9 C 1.46505 * 119.99597 * 180.02562 * 8 6 5 10 10 H 1.09000 * 112.85296 * 23.80222 * 9 8 6 11 11 C 1.53781 * 113.61334 * 154.99978 * 9 8 6 12 12 C 1.53786 * 87.17350 * 89.07333 * 11 9 8 13 13 H 1.09000 * 113.60973 * 270.92699 * 12 11 9 14 14 C 1.52990 * 113.61464 * 140.02626 * 12 11 9 15 15 O 1.45200 * 109.47114 * 175.00082 * 14 12 11 16 16 C 1.34714 * 116.99995 * 179.97438 * 15 14 12 17 17 O 1.21468 * 120.00263 * 359.97438 * 16 15 14 18 18 C 1.47730 * 119.99753 * 179.97438 * 16 15 14 19 19 C 1.39609 * 120.14658 * 179.72023 * 18 16 15 20 20 C 1.37966 * 119.84657 * 179.79228 * 19 18 16 21 21 C 1.50697 * 119.92742 * 180.23230 * 20 19 18 22 22 O 1.42900 * 109.47341 * 300.23311 * 21 20 19 23 23 Si 1.86300 * 109.47252 * 180.23447 * 21 20 19 24 24 C 1.38352 * 120.14852 * 0.46713 * 20 19 18 25 25 C 1.38386 * 120.30468 * 359.78778 * 24 20 19 26 26 C 1.37926 * 120.14792 * 359.97438 * 25 24 20 27 27 C 1.53781 * 113.61146 * 252.49455 * 9 8 6 28 28 H 1.08999 * 109.47935 * 300.00228 * 1 2 3 29 29 H 1.08997 * 109.47284 * 60.00451 * 1 2 3 30 30 H 1.09007 * 109.46845 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47433 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47220 * 300.00061 * 3 2 1 33 33 H 1.09002 * 109.47010 * 59.99957 * 3 2 1 34 34 H 1.08997 * 109.47228 * 300.00319 * 4 2 1 35 35 H 1.09009 * 109.46819 * 59.99847 * 4 2 1 36 36 H 1.08993 * 109.47281 * 179.97438 * 4 2 1 37 37 H 0.96995 * 120.00232 * 359.97438 * 8 6 5 38 38 H 1.09002 * 113.61445 * 203.66333 * 11 9 8 39 39 H 1.09002 * 113.61408 * 334.48063 * 11 9 8 40 40 H 1.09007 * 109.47036 * 294.99322 * 14 12 11 41 41 H 1.08994 * 109.47734 * 54.99728 * 14 12 11 42 42 H 1.07996 * 120.07764 * 0.02562 * 19 18 16 43 43 H 1.08998 * 109.47309 * 60.23626 * 21 20 19 44 44 H 0.96697 * 114.00114 * 300.00672 * 22 21 20 45 45 H 1.48502 * 109.99944 * 179.97438 * 23 21 20 46 46 H 1.48504 * 109.99911 * 301.31801 * 23 21 20 47 47 H 1.08003 * 119.84786 * 179.76502 * 24 20 19 48 48 H 1.07995 * 119.92670 * 179.97438 * 25 24 20 49 49 H 1.07998 * 120.07487 * 179.97438 * 26 25 24 50 50 H 1.09005 * 113.61471 * 25.43638 * 27 9 8 51 51 H 1.08996 * 113.61178 * 156.24980 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6653 2.4173 9 6 1.6741 -4.0668 2.5832 10 1 1.4225 -4.5505 1.6394 11 6 2.6471 -4.8808 3.4524 12 6 1.8074 -4.4461 4.6653 13 1 2.1364 -3.5068 5.1099 14 6 1.6040 -5.5553 5.6991 15 8 0.9056 -5.0189 6.8535 16 6 0.6458 -5.8729 7.8624 17 8 0.9927 -7.0341 7.7798 18 6 -0.0611 -5.3973 9.0692 19 6 -0.3372 -6.2810 10.1142 20 6 -0.9939 -5.8292 11.2402 21 6 -1.2881 -6.7803 12.3714 22 8 -2.1069 -7.8497 11.8939 23 14 -2.1829 -5.8720 13.7298 24 6 -1.3872 -4.5058 11.3312 25 6 -1.1215 -3.6257 10.2969 26 6 -0.4614 -4.0630 9.1675 27 6 0.6273 -4.2862 3.6882 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2493 37 1 2.6268 -2.2364 3.0834 38 1 2.6127 -5.9530 3.2593 39 1 3.6624 -4.4843 3.4595 40 1 1.0137 -6.3588 5.2584 41 1 2.5734 -5.9450 6.0096 42 1 -0.0340 -7.3151 10.0428 43 1 -0.3529 -7.1841 12.7593 44 1 -2.9572 -7.5633 11.5334 45 1 -2.4794 -6.7993 14.8511 46 1 -1.3551 -4.7378 14.2132 47 1 -1.9043 -4.1582 12.2133 48 1 -1.4316 -2.5941 10.3741 49 1 -0.2550 -3.3752 8.3609 50 1 0.0116 -3.4089 3.8868 51 1 0.0397 -5.1950 3.5587 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7081094_15734084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:56:06 Heat of formation + Delta-G solvation = -141.730511 kcal Electronic energy + Delta-G solvation = -32012.544505 eV Core-core repulsion = 27458.858223 eV Total energy + Delta-G solvation = -4553.686281 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.01463 -41.75087 -40.57415 -40.07800 -38.05458 -37.61410 -37.41790 -35.37455 -34.12915 -33.06514 -32.25304 -29.75752 -28.37747 -28.30852 -26.88151 -26.76504 -25.81409 -24.40213 -23.11641 -22.93112 -21.82993 -21.17458 -20.32156 -19.35131 -19.13183 -18.32290 -17.76879 -17.61105 -17.56766 -17.24044 -17.19054 -16.62918 -16.25358 -16.21729 -15.90010 -15.50459 -15.38167 -15.31603 -15.12576 -14.88166 -14.67305 -14.46378 -14.22158 -13.82377 -13.68270 -13.48945 -13.36873 -13.29211 -13.07012 -13.06572 -12.92809 -12.88828 -12.87668 -12.53558 -12.34558 -12.15930 -12.06065 -11.95893 -11.85774 -11.79836 -11.54697 -11.40755 -11.22390 -11.13666 -10.54308 -10.21703 -10.17423 -9.97406 -5.00188 -0.46041 0.19334 1.10724 1.25913 1.36696 1.48402 1.63611 1.70804 1.98274 2.62020 3.08787 3.32025 3.37643 3.43550 3.51196 3.61288 3.72698 3.73485 3.79447 3.82883 3.87588 3.93496 3.99718 4.16750 4.16849 4.30752 4.35018 4.40246 4.42318 4.46613 4.59799 4.60416 4.68545 4.70863 4.72574 4.75771 4.81606 4.86951 4.87718 4.88601 4.93440 5.00051 5.03574 5.12719 5.17974 5.20300 5.26256 5.28482 5.30428 5.33458 5.45863 5.59639 5.73884 6.36029 6.56149 6.73499 7.31335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.683 5.683 9 C 0.132 3.868 10 H 0.096 0.904 11 C -0.122 4.122 12 C -0.101 4.101 13 H 0.113 0.887 14 C 0.073 3.927 15 O -0.347 6.347 16 C 0.509 3.491 17 O -0.541 6.541 18 C -0.146 4.146 19 C -0.046 4.046 20 C -0.134 4.134 21 C -0.084 4.084 22 O -0.559 6.559 23 Si 0.793 3.207 24 C -0.076 4.076 25 C -0.119 4.119 26 C -0.054 4.054 27 C -0.145 4.145 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.417 0.583 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.396 0.604 45 H -0.303 1.303 46 H -0.275 1.275 47 H 0.159 0.841 48 H 0.171 0.829 49 H 0.155 0.845 50 H 0.070 0.930 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 7.316 1.148 7.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.400 3.600 7 O -0.484 6.484 8 N -0.342 5.342 9 C 0.028 3.972 10 H 0.114 0.886 11 C -0.160 4.160 12 C -0.119 4.119 13 H 0.132 0.868 14 C -0.001 4.001 15 O -0.263 6.263 16 C 0.355 3.645 17 O -0.432 6.432 18 C -0.147 4.147 19 C -0.065 4.065 20 C -0.135 4.135 21 C -0.193 4.193 22 O -0.367 6.367 23 Si 0.698 3.302 24 C -0.093 4.093 25 C -0.136 4.136 26 C -0.073 4.073 27 C -0.183 4.183 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.121 0.879 44 H 0.246 0.754 45 H -0.231 1.231 46 H -0.202 1.202 47 H 0.176 0.824 48 H 0.188 0.812 49 H 0.173 0.827 50 H 0.088 0.912 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.278 6.700 1.610 7.009 hybrid contribution 0.994 -0.802 -0.193 1.292 sum -0.284 5.898 1.417 6.073 Atomic orbital electron populations 1.22471 0.94015 1.03686 1.03547 1.22359 0.94480 0.92585 0.81464 1.21894 1.02464 0.90834 1.04276 1.22478 1.01655 1.02251 0.97384 1.86311 1.71530 1.23172 1.47287 1.18309 0.78567 0.80812 0.82326 1.90911 1.42158 1.70902 1.44390 1.44346 1.54920 1.11885 1.23073 1.21793 0.96847 0.79251 0.99315 0.88564 1.23336 0.98909 1.01739 0.92005 1.22710 0.97907 0.98850 0.92470 0.86843 1.23316 0.96576 0.97149 0.83016 1.86521 1.70336 1.42075 1.27352 1.21506 0.76063 0.83428 0.83463 1.90842 1.51276 1.20114 1.81005 1.19217 1.05878 0.96528 0.93060 1.21057 0.94476 0.99181 0.91755 1.20375 1.00953 0.95827 0.96326 1.25402 0.99519 0.92732 1.01623 1.86490 1.33817 1.33056 1.83327 0.93642 0.85701 0.76451 0.74432 1.21653 0.96294 0.91879 0.99507 1.21556 0.98045 1.01858 0.92158 1.21769 0.93304 0.93289 0.98891 1.23610 0.96666 1.03231 0.94829 0.91864 0.89486 0.91818 0.91172 0.88330 0.91115 0.91796 0.89483 0.91916 0.74538 0.86872 0.88631 0.90874 0.90727 0.86340 0.87944 0.75389 1.23088 1.20158 0.82380 0.81184 0.82714 0.91159 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 2 C 0.13 0.30 1.13 -10.80 -0.01 0.29 16 3 C -0.14 0.37 8.85 71.98 0.64 1.01 16 4 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 5 O -0.37 -1.73 9.94 -55.47 -0.55 -2.28 16 6 C 0.65 3.83 8.06 129.79 1.05 4.88 16 7 O -0.59 -6.83 11.48 19.80 0.23 -6.60 16 8 N -0.68 0.44 5.27 -567.59 -2.99 -2.55 16 9 C 0.13 -0.27 4.32 45.52 0.20 -0.08 16 10 H 0.10 0.15 7.46 -2.39 -0.02 0.13 16 11 C -0.12 0.81 7.38 31.12 0.23 1.04 16 12 C -0.10 0.51 3.91 -10.18 -0.04 0.47 16 13 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 14 C 0.07 -0.04 5.32 71.98 0.38 0.35 16 15 O -0.35 -1.02 9.47 -56.24 -0.53 -1.56 16 16 C 0.51 3.73 7.90 70.33 0.56 4.28 16 17 O -0.54 -7.45 16.14 19.94 0.32 -7.13 16 18 C -0.15 -0.55 5.87 -20.10 -0.12 -0.67 16 19 C -0.05 -0.21 9.15 22.54 0.21 0.00 16 20 C -0.13 0.06 5.39 -19.90 -0.11 -0.05 16 21 C -0.08 0.05 2.82 71.24 0.20 0.25 16 22 O -0.56 -0.68 12.76 -148.98 -1.90 -2.58 16 23 Si 0.79 -3.48 29.78 68.60 2.04 -1.44 16 24 C -0.08 0.40 8.67 22.33 0.19 0.59 16 25 C -0.12 0.73 10.03 22.23 0.22 0.96 16 26 C -0.05 0.13 9.62 22.54 0.22 0.34 16 27 C -0.14 0.41 7.44 31.21 0.23 0.64 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.06 0.52 5.88 -2.38 -0.01 0.50 16 31 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 35 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 36 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.42 -2.18 8.81 -92.71 -0.82 -3.00 16 38 H 0.11 -0.89 8.10 -2.39 -0.02 -0.91 16 39 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.07 0.02 7.85 -2.38 -0.02 0.00 16 41 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.12 0.99 7.65 -2.91 -0.02 0.97 16 43 H 0.10 0.15 7.96 -2.39 -0.02 0.13 16 44 H 0.40 -2.94 8.70 -74.06 -0.64 -3.58 16 45 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 46 H -0.28 0.33 7.11 99.48 0.71 1.04 16 47 H 0.16 -1.66 4.86 -2.91 -0.01 -1.67 16 48 H 0.17 -2.11 8.06 -2.91 -0.02 -2.14 16 49 H 0.16 -0.85 7.61 -2.91 -0.02 -0.87 16 50 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 51 H 0.10 -0.30 7.91 -2.39 -0.02 -0.32 16 Total: 0.00 -23.42 417.94 1.40 -22.02 By element: Atomic # 1 Polarization: -11.92 SS G_CDS: -0.46 Total: -12.39 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 5.25 Total: 14.50 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -2.99 Total: -2.55 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -2.44 Total: -20.14 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: 2.04 Total: -1.44 kcal Total: -23.42 1.40 -22.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7081094_15734084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.713 kcal (2) G-P(sol) polarization free energy of solvation -23.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds