Wall clock time and date at job start Sat Mar 6 2021 10:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86306 * 109.47028 * 2 1 4 4 C 1.86297 * 109.47241 * 240.00130 * 2 1 3 5 5 C 1.86798 * 109.47342 * 119.99814 * 2 1 3 6 6 C 1.38235 * 119.99978 * 89.99737 * 5 2 1 7 7 C 1.38232 * 119.99895 * 180.02562 * 6 5 2 8 8 C 1.38238 * 120.00115 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99986 * 179.97438 * 8 7 6 10 10 O 1.45199 * 109.47179 * 89.99927 * 9 8 7 11 11 C 1.34709 * 117.00332 * 180.02562 * 10 9 8 12 12 O 1.21480 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.47727 * 120.00486 * 179.97438 * 11 10 9 14 14 C 1.39610 * 120.14301 * 359.97438 * 13 11 10 15 15 C 1.37973 * 119.84042 * 180.02562 * 14 13 11 16 16 C 1.38342 * 120.15246 * 359.97438 * 15 14 13 17 17 C 1.38386 * 120.30410 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.92445 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46801 * 245.02034 * 18 17 16 20 20 Si 1.86293 * 109.47389 * 5.01713 * 18 17 16 21 21 H 1.48500 * 109.46877 * 60.00291 * 20 18 17 22 22 H 1.48503 * 109.47447 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47411 * 300.00599 * 20 18 17 24 24 C 1.37925 * 120.14987 * 0.02562 * 17 16 15 25 25 C 1.38232 * 119.99954 * 0.24887 * 8 7 6 26 26 C 1.38235 * 119.99942 * 359.49600 * 25 8 7 27 27 H 1.08997 * 109.47514 * 300.00462 * 1 2 3 28 28 H 1.09008 * 109.47288 * 59.99984 * 1 2 3 29 29 H 1.08996 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46871 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46890 * 299.99406 * 3 2 1 32 32 H 1.08994 * 109.47577 * 59.99911 * 3 2 1 33 33 H 1.09006 * 109.46872 * 299.99371 * 4 2 1 34 34 H 1.08995 * 109.47671 * 59.99734 * 4 2 1 35 35 H 1.09006 * 109.47332 * 180.02562 * 4 2 1 36 36 H 1.07998 * 119.99757 * 0.02562 * 6 5 2 37 37 H 1.07999 * 120.00485 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47149 * 329.99515 * 9 8 7 39 39 H 1.09001 * 109.47231 * 209.99846 * 9 8 7 40 40 H 1.07999 * 120.08057 * 0.04413 * 14 13 11 41 41 H 1.07997 * 119.91809 * 179.97438 * 15 14 13 42 42 H 1.07995 * 119.84539 * 180.02562 * 16 15 14 43 43 H 1.08998 * 109.47218 * 125.02347 * 18 17 16 44 44 H 0.96698 * 114.00695 * 59.99798 * 19 18 17 45 45 H 1.08007 * 120.07484 * 179.70111 * 24 17 16 46 46 H 1.08000 * 120.00410 * 179.72653 * 25 8 7 47 47 H 1.08002 * 119.99945 * 180.22839 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7160 -2.2431 1.4910 7 6 3.1763 -2.8948 2.6198 8 6 3.4058 -2.1839 3.7831 9 6 3.9071 -2.8945 5.0139 10 8 5.3591 -2.8946 5.0151 11 6 5.9698 -3.4953 6.0547 12 8 5.3074 -4.0048 6.9364 13 6 7.4450 -3.5346 6.1226 14 6 8.2092 -2.9506 5.1107 15 6 9.5866 -2.9914 5.1801 16 6 10.2104 -3.6087 6.2495 17 6 9.4590 -4.1896 7.2559 18 6 10.1475 -4.8592 8.4172 19 8 9.8593 -6.2588 8.3990 20 14 11.9875 -4.6023 8.2804 21 1 12.2869 -3.1479 8.2993 22 1 12.6660 -5.2627 9.4244 23 1 12.4765 -5.1918 7.0081 24 6 8.0813 -4.1570 7.1986 25 6 3.1700 -0.8224 3.8189 26 6 2.7147 -0.1698 2.6885 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8901 32 1 2.1206 2.2704 0.8899 33 1 2.1207 -1.9059 -1.5211 34 1 2.1207 -0.3644 -2.4111 35 1 3.5740 -0.8786 -1.5209 36 1 2.5363 -2.7985 0.5824 37 1 3.3559 -3.9594 2.5934 38 1 3.5437 -3.9221 5.0135 39 1 3.5431 -2.3808 5.9036 40 1 7.7234 -2.4677 4.2757 41 1 10.1790 -2.5403 4.3978 42 1 11.2889 -3.6374 6.2991 43 1 9.7886 -4.4265 9.3510 44 1 10.1514 -6.7102 7.5952 45 1 7.4960 -4.6149 7.9823 46 1 3.3451 -0.2677 4.7289 47 1 2.5341 0.8947 2.7155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_7081094_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:07:29 Heat of formation + Delta-G solvation = -113.425483 kcal Electronic energy + Delta-G solvation = -26131.219353 eV Core-core repulsion = 22367.042238 eV Total energy + Delta-G solvation = -3764.177115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66619 -40.45123 -39.84149 -37.67502 -37.35668 -33.40987 -32.69319 -32.26949 -31.92240 -29.61750 -28.47595 -28.44161 -27.68753 -26.82828 -25.28767 -23.51657 -22.98380 -22.16631 -21.69923 -19.16301 -18.32582 -18.00241 -17.49451 -17.43854 -17.13537 -16.35598 -16.25131 -15.93763 -15.89967 -15.48377 -15.12192 -14.67398 -14.54536 -14.42395 -14.23043 -14.19616 -14.17924 -13.94388 -13.86383 -13.46982 -13.44994 -13.29422 -13.29067 -13.15688 -13.13193 -12.89966 -12.67230 -12.27781 -12.09064 -12.08383 -11.70414 -11.62470 -11.58020 -11.07010 -10.93829 -10.87004 -10.54165 -10.19456 -10.03254 -9.81842 -9.72516 -0.43416 0.09585 0.16042 0.50946 1.04944 1.34699 1.43165 1.48641 1.62461 1.67756 1.81606 1.84329 1.98397 2.50939 2.61164 2.92300 3.35718 3.48327 3.56868 3.75861 3.76942 3.79878 3.92752 4.08382 4.11788 4.22278 4.29553 4.35814 4.46435 4.47310 4.64051 4.66636 4.67286 4.68473 4.72404 4.73003 4.73631 4.73924 4.80559 4.96200 5.11776 5.12911 5.16922 5.21522 5.33036 5.40815 5.45389 5.46901 5.51178 5.58544 5.58828 5.66422 6.07182 6.47635 6.73865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.110 3.890 10 O -0.346 6.346 11 C 0.509 3.491 12 O -0.501 6.501 13 C -0.126 4.126 14 C -0.056 4.056 15 C -0.125 4.125 16 C -0.089 4.089 17 C -0.132 4.132 18 C -0.082 4.082 19 O -0.536 6.536 20 Si 0.951 3.049 21 H -0.249 1.249 22 H -0.251 1.251 23 H -0.251 1.251 24 C -0.025 4.025 25 C -0.106 4.106 26 C -0.091 4.091 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.377 0.623 45 H 0.144 0.856 46 H 0.121 0.879 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 2.224 -3.865 4.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.091 4.091 9 C 0.036 3.964 10 O -0.264 6.264 11 C 0.354 3.646 12 O -0.390 6.390 13 C -0.127 4.127 14 C -0.074 4.074 15 C -0.143 4.143 16 C -0.107 4.107 17 C -0.133 4.133 18 C -0.192 4.192 19 O -0.341 6.341 20 Si 0.773 3.227 21 H -0.172 1.172 22 H -0.175 1.175 23 H -0.174 1.174 24 C -0.043 4.043 25 C -0.124 4.124 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.224 0.776 45 H 0.161 0.839 46 H 0.139 0.861 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.077 2.307 -3.029 4.337 hybrid contribution -0.380 -0.256 -0.286 0.540 sum 1.697 2.051 -3.315 4.251 Atomic orbital electron populations 1.26126 1.20425 1.04609 1.04530 0.78178 0.66869 0.66117 0.63650 1.26137 1.06480 1.18540 1.04593 1.26137 1.06480 1.08062 1.15074 1.27498 1.02903 0.99524 1.10251 1.21083 0.97468 0.94667 0.97721 1.21165 0.98731 0.99921 0.92541 1.19473 1.01049 0.94216 0.94343 1.21890 0.76237 1.01420 0.96805 1.86598 1.23233 1.71137 1.45390 1.21161 0.89012 0.75082 0.79390 1.90872 1.66607 1.43097 1.38416 1.19161 0.89147 1.05767 0.98588 1.21576 0.93908 0.94848 0.97052 1.21144 0.94403 1.00114 0.98664 1.21394 1.00010 0.95784 0.93539 1.20285 0.93972 1.01405 0.97624 1.25032 1.11056 0.83882 0.99234 1.86550 1.84621 1.18256 1.44674 0.85668 0.74198 0.81479 0.81355 1.17227 1.17475 1.17427 1.21140 0.93747 0.93406 0.96049 1.21165 0.98747 0.93524 0.98927 1.21085 0.97491 0.99782 0.92580 0.91156 0.90995 0.91152 0.91037 0.90925 0.91158 0.91160 0.90920 0.91036 0.85829 0.86065 0.90011 0.90016 0.84063 0.84489 0.85459 0.86121 0.77581 0.83859 0.86066 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.77 8.65 101.05 0.87 1.64 16 2 Si 1.06 -2.95 12.32 -169.99 -2.09 -5.04 16 3 C -0.45 0.93 8.53 101.05 0.86 1.79 16 4 C -0.45 0.93 8.53 101.05 0.86 1.79 16 5 C -0.36 0.15 4.59 -39.58 -0.18 -0.03 16 6 C -0.09 -0.01 9.29 -39.58 -0.37 -0.38 16 7 C -0.11 -0.10 9.70 -39.58 -0.38 -0.49 16 8 C -0.09 -0.13 5.52 -104.62 -0.58 -0.71 16 9 C 0.11 0.18 5.60 36.01 0.20 0.39 16 10 O -0.35 -0.93 9.46 -40.52 -0.38 -1.32 16 11 C 0.51 1.84 7.90 34.61 0.27 2.11 16 12 O -0.50 -3.05 16.14 -19.25 -0.31 -3.36 16 13 C -0.13 -0.25 5.87 -104.98 -0.62 -0.87 16 14 C -0.06 -0.01 9.62 -39.17 -0.38 -0.39 16 15 C -0.13 0.13 10.03 -39.64 -0.40 -0.27 16 16 C -0.09 0.07 8.67 -39.49 -0.34 -0.27 16 17 C -0.13 -0.01 5.34 -104.68 -0.56 -0.57 16 18 C -0.08 0.06 2.80 36.01 0.10 0.16 16 19 O -0.54 -0.11 12.83 -35.23 -0.45 -0.56 16 20 Si 0.95 -1.27 25.13 -169.99 -4.27 -5.54 16 21 H -0.25 0.22 7.11 56.52 0.40 0.62 16 22 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 23 H -0.25 0.37 7.04 56.52 0.40 0.76 16 24 C -0.03 -0.04 9.23 -39.17 -0.36 -0.40 16 25 C -0.11 -0.10 9.70 -39.58 -0.38 -0.49 16 26 C -0.09 -0.01 9.29 -39.58 -0.37 -0.38 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.14 7.96 -51.92 -0.41 -0.55 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 37 H 0.12 -0.03 8.06 -52.49 -0.42 -0.46 16 38 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 39 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 40 H 0.14 -0.12 7.61 -52.49 -0.40 -0.52 16 41 H 0.14 -0.45 8.06 -52.49 -0.42 -0.87 16 42 H 0.13 -0.30 4.84 -52.49 -0.25 -0.55 16 43 H 0.12 -0.17 7.96 -51.93 -0.41 -0.58 16 44 H 0.38 -1.18 8.70 45.56 0.40 -0.78 16 45 H 0.14 0.32 7.65 -52.48 -0.40 -0.08 16 46 H 0.12 -0.03 8.06 -52.49 -0.42 -0.46 16 47 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 LS Contribution 399.07 15.07 6.01 6.01 Total: 0.00 -6.84 399.07 -9.69 -16.54 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -6.45 Total: -9.36 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.74 Total: 2.64 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -1.15 Total: -5.24 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: -6.37 Total: -10.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -6.84 -9.69 -16.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7081094_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.887 kcal (2) G-P(sol) polarization free energy of solvation -6.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds