Wall clock time and date at job start Sat Mar 6 2021 10:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86306 * 109.47028 * 2 1 4 4 C 1.86297 * 109.47241 * 240.00130 * 2 1 3 5 5 C 1.86798 * 109.47342 * 119.99814 * 2 1 3 6 6 C 1.38235 * 119.99978 * 89.99737 * 5 2 1 7 7 C 1.38232 * 119.99895 * 180.02562 * 6 5 2 8 8 C 1.38238 * 120.00115 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99986 * 179.97438 * 8 7 6 10 10 O 1.45199 * 109.47179 * 89.99927 * 9 8 7 11 11 C 1.34709 * 117.00332 * 180.02562 * 10 9 8 12 12 O 1.21480 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.47727 * 120.00486 * 179.97438 * 11 10 9 14 14 C 1.39610 * 120.14301 * 359.97438 * 13 11 10 15 15 C 1.37973 * 119.84042 * 180.02562 * 14 13 11 16 16 C 1.38342 * 120.15246 * 359.97438 * 15 14 13 17 17 C 1.38386 * 120.30410 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.92445 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46801 * 245.02034 * 18 17 16 20 20 Si 1.86293 * 109.47389 * 5.01713 * 18 17 16 21 21 H 1.48500 * 109.46877 * 60.00291 * 20 18 17 22 22 H 1.48503 * 109.47447 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47411 * 300.00599 * 20 18 17 24 24 C 1.37925 * 120.14987 * 0.02562 * 17 16 15 25 25 C 1.38232 * 119.99954 * 0.24887 * 8 7 6 26 26 C 1.38235 * 119.99942 * 359.49600 * 25 8 7 27 27 H 1.08997 * 109.47514 * 300.00462 * 1 2 3 28 28 H 1.09008 * 109.47288 * 59.99984 * 1 2 3 29 29 H 1.08996 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46871 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46890 * 299.99406 * 3 2 1 32 32 H 1.08994 * 109.47577 * 59.99911 * 3 2 1 33 33 H 1.09006 * 109.46872 * 299.99371 * 4 2 1 34 34 H 1.08995 * 109.47671 * 59.99734 * 4 2 1 35 35 H 1.09006 * 109.47332 * 180.02562 * 4 2 1 36 36 H 1.07998 * 119.99757 * 0.02562 * 6 5 2 37 37 H 1.07999 * 120.00485 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47149 * 329.99515 * 9 8 7 39 39 H 1.09001 * 109.47231 * 209.99846 * 9 8 7 40 40 H 1.07999 * 120.08057 * 0.04413 * 14 13 11 41 41 H 1.07997 * 119.91809 * 179.97438 * 15 14 13 42 42 H 1.07995 * 119.84539 * 180.02562 * 16 15 14 43 43 H 1.08998 * 109.47218 * 125.02347 * 18 17 16 44 44 H 0.96698 * 114.00695 * 59.99798 * 19 18 17 45 45 H 1.08007 * 120.07484 * 179.70111 * 24 17 16 46 46 H 1.08000 * 120.00410 * 179.72653 * 25 8 7 47 47 H 1.08002 * 119.99945 * 180.22839 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5252 6 6 2.7160 -2.2431 1.4910 7 6 3.1763 -2.8948 2.6198 8 6 3.4058 -2.1839 3.7831 9 6 3.9071 -2.8945 5.0139 10 8 5.3591 -2.8946 5.0151 11 6 5.9698 -3.4953 6.0547 12 8 5.3074 -4.0048 6.9364 13 6 7.4450 -3.5346 6.1226 14 6 8.2092 -2.9506 5.1107 15 6 9.5866 -2.9914 5.1801 16 6 10.2104 -3.6087 6.2495 17 6 9.4590 -4.1896 7.2559 18 6 10.1475 -4.8592 8.4172 19 8 9.8593 -6.2588 8.3990 20 14 11.9875 -4.6023 8.2804 21 1 12.2869 -3.1479 8.2993 22 1 12.6660 -5.2627 9.4244 23 1 12.4765 -5.1918 7.0081 24 6 8.0813 -4.1570 7.1986 25 6 3.1700 -0.8224 3.8189 26 6 2.7147 -0.1698 2.6885 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8901 32 1 2.1206 2.2704 0.8899 33 1 2.1207 -1.9059 -1.5211 34 1 2.1207 -0.3644 -2.4111 35 1 3.5740 -0.8786 -1.5209 36 1 2.5363 -2.7985 0.5824 37 1 3.3559 -3.9594 2.5934 38 1 3.5437 -3.9221 5.0135 39 1 3.5431 -2.3808 5.9036 40 1 7.7234 -2.4677 4.2757 41 1 10.1790 -2.5403 4.3978 42 1 11.2889 -3.6374 6.2991 43 1 9.7886 -4.4265 9.3510 44 1 10.1514 -6.7102 7.5952 45 1 7.4960 -4.6149 7.9823 46 1 3.3451 -0.2677 4.7289 47 1 2.5341 0.8947 2.7155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7081094_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:07:28 Heat of formation + Delta-G solvation = -103.745772 kcal Electronic energy + Delta-G solvation = -26130.799610 eV Core-core repulsion = 22367.042238 eV Total energy + Delta-G solvation = -3763.757371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86552 -40.47652 -39.88694 -37.72857 -37.54469 -33.46537 -32.70921 -32.28151 -31.91290 -29.44216 -28.28150 -28.26316 -27.76887 -26.80155 -25.38485 -23.51285 -22.98229 -22.19489 -21.84552 -19.24259 -18.50542 -18.02909 -17.66153 -17.47057 -17.15565 -16.34663 -16.23103 -16.00101 -15.91737 -15.47206 -15.07621 -14.67288 -14.55797 -14.43038 -14.26307 -14.16807 -14.04408 -13.85135 -13.72166 -13.52712 -13.42256 -13.15045 -13.13476 -13.10028 -12.95501 -12.93807 -12.68175 -12.15592 -12.13382 -12.05550 -11.84692 -11.77842 -11.63448 -10.92199 -10.79645 -10.74714 -10.49265 -10.22745 -10.02613 -9.83468 -9.72448 -0.51471 0.06865 0.15873 0.49450 1.13757 1.30663 1.46664 1.52146 1.53955 1.83784 1.93223 2.03682 2.13107 2.57190 2.67002 2.91394 3.41021 3.44139 3.61829 3.69784 3.72932 3.81936 3.90906 4.07463 4.12489 4.18165 4.22906 4.34291 4.49123 4.51305 4.68032 4.68180 4.85414 4.85559 4.85705 4.89801 4.90727 4.91140 4.91570 4.95527 5.04061 5.13479 5.14555 5.23228 5.25496 5.38143 5.54123 5.56673 5.60409 5.68791 5.68947 5.71939 6.08860 6.48969 6.67624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.130 2.870 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.101 4.101 7 C -0.120 4.120 8 C -0.105 4.105 9 C 0.109 3.891 10 O -0.345 6.345 11 C 0.509 3.491 12 O -0.536 6.536 13 C -0.144 4.144 14 C -0.055 4.055 15 C -0.119 4.119 16 C -0.087 4.087 17 C -0.132 4.132 18 C -0.089 4.089 19 O -0.555 6.555 20 Si 0.990 3.010 21 H -0.250 1.250 22 H -0.277 1.277 23 H -0.241 1.241 24 C -0.040 4.040 25 C -0.120 4.120 26 C -0.101 4.101 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.151 0.849 41 H 0.167 0.833 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.390 0.610 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 3.102 -5.506 6.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.317 2.683 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.410 4.410 6 C -0.119 4.119 7 C -0.138 4.138 8 C -0.105 4.105 9 C 0.036 3.964 10 O -0.262 6.262 11 C 0.356 3.644 12 O -0.428 6.428 13 C -0.145 4.145 14 C -0.074 4.074 15 C -0.137 4.137 16 C -0.105 4.105 17 C -0.133 4.133 18 C -0.198 4.198 19 O -0.362 6.362 20 Si 0.812 3.188 21 H -0.174 1.174 22 H -0.203 1.203 23 H -0.164 1.164 24 C -0.058 4.058 25 C -0.138 4.138 26 C -0.119 4.119 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.168 0.832 41 H 0.185 0.815 42 H 0.166 0.834 43 H 0.138 0.862 44 H 0.239 0.761 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.143 3.182 -4.687 6.478 hybrid contribution -0.722 -0.529 0.219 0.922 sum 2.421 2.652 -4.468 5.732 Atomic orbital electron populations 1.26305 1.21714 1.04452 1.04578 0.77135 0.65057 0.64630 0.61508 1.26279 1.06473 1.19319 1.04888 1.26278 1.06474 1.08483 1.15722 1.28117 1.02032 0.99585 1.11235 1.21400 0.97154 0.95210 0.98098 1.21372 0.99124 1.00443 0.92833 1.19524 1.01947 0.94643 0.94371 1.21949 0.75770 1.01487 0.97234 1.86599 1.23837 1.70783 1.44989 1.21551 0.89757 0.74227 0.78893 1.90843 1.67462 1.44802 1.39660 1.19203 0.88240 1.07291 0.99734 1.21726 0.94567 0.94428 0.96633 1.21494 0.93933 0.99188 0.99071 1.21674 1.01013 0.94833 0.92968 1.20394 0.93277 1.01382 0.98231 1.25233 1.12090 0.83409 0.99050 1.86515 1.85030 1.18867 1.45811 0.85118 0.72279 0.80818 0.80537 1.17356 1.20292 1.16393 1.21102 0.94560 0.94215 0.95938 1.21372 0.99134 0.93526 0.99744 1.21402 0.97178 1.00846 0.92436 0.91439 0.90641 0.91436 0.91213 0.90640 0.90917 0.90917 0.90635 0.91210 0.84010 0.85499 0.90150 0.90136 0.83173 0.81544 0.83415 0.86175 0.76078 0.85511 0.85493 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.87 8.65 113.37 0.98 2.85 16 2 Si 1.13 -7.27 12.32 68.60 0.85 -6.43 16 3 C -0.46 2.35 8.53 113.37 0.97 3.32 16 4 C -0.46 2.35 8.53 113.37 0.97 3.32 16 5 C -0.37 0.43 4.59 22.27 0.10 0.53 16 6 C -0.10 -0.02 9.29 22.27 0.21 0.18 16 7 C -0.12 -0.34 9.70 22.27 0.22 -0.12 16 8 C -0.10 -0.45 5.52 -19.87 -0.11 -0.56 16 9 C 0.11 0.59 5.60 71.24 0.40 0.99 16 10 O -0.35 -2.49 9.46 -56.18 -0.53 -3.02 16 11 C 0.51 4.83 7.90 70.33 0.56 5.39 16 12 O -0.54 -8.15 16.14 19.90 0.32 -7.83 16 13 C -0.14 -0.78 5.87 -20.10 -0.12 -0.89 16 14 C -0.06 -0.01 9.62 22.54 0.22 0.21 16 15 C -0.12 0.43 10.03 22.23 0.22 0.66 16 16 C -0.09 0.25 8.67 22.33 0.19 0.45 16 17 C -0.13 -0.06 5.34 -19.90 -0.11 -0.17 16 18 C -0.09 0.10 2.80 71.24 0.20 0.30 16 19 O -0.55 -0.65 12.83 -148.98 -1.91 -2.56 16 20 Si 0.99 -3.39 25.13 68.60 1.72 -1.67 16 21 H -0.25 0.80 7.11 99.48 0.71 1.51 16 22 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 23 H -0.24 1.20 7.04 99.48 0.70 1.90 16 24 C -0.04 -0.20 9.23 22.53 0.21 0.01 16 25 C -0.12 -0.34 9.70 22.27 0.22 -0.12 16 26 C -0.10 -0.02 9.29 22.27 0.21 0.18 16 27 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 28 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 29 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.07 -0.31 7.96 -2.38 -0.02 -0.32 16 31 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 32 H 0.07 -0.39 7.69 -2.39 -0.02 -0.41 16 33 H 0.07 -0.39 7.69 -2.38 -0.02 -0.41 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 36 H 0.14 -0.60 7.43 -2.91 -0.02 -0.62 16 37 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 38 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 39 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 40 H 0.15 -0.30 7.61 -2.91 -0.02 -0.32 16 41 H 0.17 -1.59 8.06 -2.91 -0.02 -1.61 16 42 H 0.15 -1.05 4.84 -2.91 -0.01 -1.06 16 43 H 0.12 -0.20 7.96 -2.39 -0.02 -0.22 16 44 H 0.39 -2.30 8.70 -74.06 -0.64 -2.95 16 45 H 0.13 0.98 7.65 -2.91 -0.02 0.95 16 46 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 47 H 0.14 -0.60 7.43 -2.91 -0.02 -0.62 16 Total: 0.00 -16.93 399.07 7.04 -9.89 By element: Atomic # 1 Polarization: -5.97 SS G_CDS: 1.07 Total: -4.90 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.52 Total: 16.51 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -2.12 Total: -13.41 kcal Atomic # 14 Polarization: -10.66 SS G_CDS: 2.57 Total: -8.09 kcal Total: -16.93 7.04 -9.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7081094_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.860 kcal (2) G-P(sol) polarization free energy of solvation -16.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds