Wall clock time and date at job start Sat Mar 6 2021 13:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38730 * 119.94247 * 0.57453 * 6 5 4 8 8 O 1.35905 * 120.05113 * 179.68140 * 7 6 5 9 9 C 1.42894 * 117.00217 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.47162 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47322 * 179.97438 * 10 9 8 12 12 O 1.20831 * 120.00117 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00439 * 179.97438 * 11 10 9 14 14 C 1.45196 * 117.00572 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47390 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.84864 * 316.19184 * 15 14 13 17 17 C 1.53785 * 113.61425 * 87.50062 * 15 14 13 18 18 C 1.53783 * 87.08122 * 139.98074 * 17 15 14 19 19 H 1.09002 * 113.60917 * 89.11541 * 18 17 15 20 20 O 1.42894 * 113.61141 * 220.01588 * 18 17 15 21 21 C 1.53777 * 87.08291 * 334.56703 * 18 17 15 22 22 C 1.38728 * 119.89348 * 359.69988 * 7 6 5 23 23 C 1.38153 * 119.93918 * 0.02562 * 22 7 6 24 24 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 25 25 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 26 26 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 27 27 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 28 28 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 29 29 H 1.08006 * 120.02667 * 180.25271 * 6 5 4 30 30 H 1.09003 * 109.47358 * 299.99752 * 9 8 7 31 31 H 1.08997 * 109.47186 * 59.99912 * 9 8 7 32 32 H 1.09003 * 109.46597 * 299.99992 * 10 9 8 33 33 H 1.08997 * 109.47327 * 59.99773 * 10 9 8 34 34 H 1.09009 * 109.46643 * 300.00009 * 14 13 11 35 35 H 1.09001 * 109.47446 * 59.99409 * 14 13 11 36 36 H 1.09005 * 113.61064 * 254.52674 * 17 15 14 37 37 H 1.09000 * 113.61603 * 25.42871 * 17 15 14 38 38 H 0.96704 * 114.00197 * 277.49923 * 20 18 17 39 39 H 1.09001 * 113.61426 * 270.88894 * 21 18 17 40 40 H 1.08995 * 113.61642 * 139.97983 * 21 18 17 41 41 H 1.07991 * 120.03062 * 180.02562 * 22 7 6 42 42 H 1.08000 * 119.96925 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8532 -2.0145 -3.4893 8 8 3.3055 -2.6549 -4.5994 9 6 4.1222 -1.8998 -5.4965 10 6 4.5319 -2.7814 -6.6780 11 6 5.3926 -1.9849 -7.6244 12 8 5.6521 -0.8306 -7.3789 13 8 5.8718 -2.5580 -8.7396 14 6 6.6941 -1.7312 -9.6047 15 6 7.1452 -2.5507 -10.8153 16 1 7.4778 -3.5536 -10.5474 17 6 6.1469 -2.5225 -11.9848 18 6 7.3647 -2.4257 -12.9189 19 1 7.7565 -3.3950 -13.2273 20 8 7.1756 -1.5280 -14.0145 21 6 8.1239 -1.8024 -11.7358 22 6 2.0556 -2.6876 -2.5754 23 6 1.5963 -2.0340 -1.4482 24 1 -0.3933 0.4418 0.7650 25 1 1.7923 -0.5138 0.8900 26 1 3.5346 1.7703 0.0321 27 1 1.5616 2.4679 -1.2086 28 1 2.9776 0.9996 -1.9728 29 1 3.8086 -0.1602 -3.9787 30 1 3.5608 -1.0401 -5.8627 31 1 5.0141 -1.5552 -4.9733 32 1 5.0931 -3.6413 -6.3121 33 1 3.6398 -3.1256 -7.2011 34 1 6.1155 -0.8713 -9.9426 35 1 7.5690 -1.3864 -9.0534 36 1 5.5817 -3.4476 -12.0987 37 1 5.5147 -1.6347 -11.9980 38 1 6.6987 -1.9143 -14.7618 39 1 8.0322 -0.7177 -11.6808 40 1 9.1546 -2.1461 -11.6486 41 1 1.7939 -3.7215 -2.7449 42 1 0.9750 -2.5575 -0.7366 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_764628_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:01:47 Heat of formation + Delta-G solvation = -150.091806 kcal Electronic energy + Delta-G solvation = -24115.497728 eV Core-core repulsion = 20221.713782 eV Total energy + Delta-G solvation = -3893.783946 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78670 -41.21473 -40.35841 -39.15951 -37.70978 -37.22242 -36.05561 -33.69523 -32.11268 -31.61178 -29.74800 -26.90112 -26.71951 -25.74152 -23.94191 -23.31368 -22.16102 -21.72644 -20.67591 -19.63135 -18.73867 -18.53198 -18.38788 -18.01864 -17.27195 -17.17523 -17.02073 -16.66822 -16.49542 -15.76406 -15.52539 -15.37721 -15.30785 -14.75300 -14.47391 -14.43772 -14.04106 -13.82169 -13.66555 -13.63093 -13.58683 -13.05206 -12.98942 -12.80043 -12.51976 -12.37435 -12.24518 -11.96453 -11.89814 -11.79485 -11.75422 -11.62110 -11.32643 -10.85955 -10.31835 -10.03025 -9.18696 -4.97439 0.28121 0.32087 1.04592 1.20425 1.29400 1.63829 1.97947 2.26775 2.64234 3.08476 3.29036 3.34799 3.40235 3.42962 3.59813 3.67957 3.70630 3.78783 3.81413 3.85696 3.97201 4.05917 4.12056 4.13649 4.23389 4.32671 4.35418 4.41521 4.43917 4.52779 4.56090 4.64046 4.64921 4.70453 4.83600 4.93476 4.97993 5.17672 5.19605 5.26337 5.33304 5.50646 5.69240 6.29095 6.57940 6.61263 6.63098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.066 4.066 3 Si 0.680 3.320 4 C -0.113 4.113 5 C -0.083 4.083 6 C -0.201 4.201 7 C 0.136 3.864 8 O -0.312 6.312 9 C 0.069 3.931 10 C -0.114 4.114 11 C 0.470 3.530 12 O -0.507 6.507 13 O -0.352 6.352 14 C 0.079 3.921 15 C -0.112 4.112 16 H 0.108 0.892 17 C -0.165 4.165 18 C 0.076 3.924 19 H 0.086 0.914 20 O -0.560 6.560 21 C -0.120 4.120 22 C -0.147 4.147 23 C -0.049 4.049 24 H 0.382 0.618 25 H 0.074 0.926 26 H -0.256 1.256 27 H -0.251 1.251 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.381 0.619 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 -2.149 1.297 2.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.177 4.177 3 Si 0.582 3.418 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.219 4.219 7 C 0.091 3.909 8 O -0.226 6.226 9 C -0.006 4.006 10 C -0.152 4.152 11 C 0.313 3.687 12 O -0.395 6.395 13 O -0.268 6.268 14 C 0.006 3.994 15 C -0.130 4.130 16 H 0.126 0.874 17 C -0.203 4.203 18 C 0.017 3.983 19 H 0.104 0.896 20 O -0.365 6.365 21 C -0.158 4.158 22 C -0.165 4.165 23 C -0.067 4.067 24 H 0.229 0.771 25 H 0.092 0.908 26 H -0.181 1.181 27 H -0.176 1.176 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.229 0.771 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.155 0.845 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.815 -1.297 0.672 1.673 hybrid contribution -0.040 -0.595 -0.619 0.860 sum 0.776 -1.893 0.053 2.046 Atomic orbital electron populations 1.86492 1.17322 1.81771 1.49686 1.24596 0.85597 1.10090 0.97378 0.95413 0.80654 0.78255 0.87481 1.19268 1.00750 0.94843 0.96434 1.20661 0.97253 0.98568 0.93551 1.21197 1.05831 0.94488 1.00431 1.18940 0.94335 0.90904 0.86719 1.85963 1.65017 1.40150 1.31441 1.22450 0.95082 0.93800 0.89291 1.21081 1.00954 0.99442 0.93714 1.23203 0.78354 0.86340 0.80814 1.90726 1.56332 1.18292 1.74171 1.86471 1.62286 1.45351 1.32713 1.23137 0.93922 0.92867 0.89497 1.22383 0.97991 1.00731 0.91890 0.87417 1.23803 0.97475 1.03395 0.95581 1.23280 0.96099 0.93169 0.85716 0.89630 1.86529 1.79870 1.41336 1.28805 1.23077 0.98547 1.01556 0.92611 1.20518 1.00606 1.01164 0.94256 1.20826 0.96488 0.93353 0.96058 0.77063 0.90800 1.18066 1.17599 0.86249 0.84862 0.90693 0.90676 0.86130 0.86145 0.90618 0.90587 0.90620 0.89039 0.77145 0.88701 0.89970 0.84514 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.29 12.74 -35.23 -0.45 -0.74 16 2 C -0.07 -0.03 2.81 36.00 0.10 0.07 16 3 Si 0.68 -0.31 29.78 -169.99 -5.06 -5.37 16 4 C -0.11 -0.32 5.42 -104.60 -0.57 -0.89 16 5 C -0.08 -0.27 8.66 -39.60 -0.34 -0.62 16 6 C -0.20 -0.59 9.04 -39.43 -0.36 -0.95 16 7 C 0.14 0.40 6.69 -39.22 -0.26 0.14 16 8 O -0.31 -0.65 10.14 -19.44 -0.20 -0.85 16 9 C 0.07 0.03 4.03 37.16 0.15 0.18 16 10 C -0.11 0.13 6.18 -27.89 -0.17 -0.04 16 11 C 0.47 0.59 7.96 36.00 0.29 0.88 16 12 O -0.51 -2.10 15.73 -18.75 -0.30 -2.40 16 13 O -0.35 -0.32 10.22 -39.26 -0.40 -0.72 16 14 C 0.08 0.01 5.30 37.16 0.20 0.21 16 15 C -0.11 0.13 4.02 -89.80 -0.36 -0.23 16 16 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 17 C -0.16 0.18 7.46 -25.92 -0.19 -0.01 16 18 C 0.08 -0.07 5.21 -25.92 -0.14 -0.21 16 19 H 0.09 -0.20 8.14 -51.93 -0.42 -0.63 16 20 O -0.56 -0.27 13.67 -35.23 -0.48 -0.76 16 21 C -0.12 0.11 7.47 -25.92 -0.19 -0.08 16 22 C -0.15 -0.34 9.99 -39.43 -0.39 -0.74 16 23 C -0.05 -0.11 9.60 -39.60 -0.38 -0.49 16 24 H 0.38 -1.73 8.74 45.56 0.40 -1.33 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H -0.26 -0.51 7.11 56.52 0.40 -0.10 16 27 H -0.25 -0.73 7.11 56.52 0.40 -0.32 16 28 H 0.12 0.32 4.87 -52.49 -0.26 0.07 16 29 H 0.13 0.21 6.30 -52.48 -0.33 -0.12 16 30 H 0.07 0.05 7.62 -51.93 -0.40 -0.34 16 31 H 0.08 0.04 7.62 -51.93 -0.40 -0.36 16 32 H 0.12 -0.32 8.14 -51.93 -0.42 -0.74 16 33 H 0.12 -0.30 8.14 -51.93 -0.42 -0.73 16 34 H 0.08 0.05 7.84 -51.92 -0.41 -0.36 16 35 H 0.08 0.01 8.13 -51.93 -0.42 -0.41 16 36 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.09 -0.02 7.90 -51.93 -0.41 -0.43 16 38 H 0.38 -1.35 9.12 45.56 0.42 -0.93 16 39 H 0.09 -0.01 8.10 -51.93 -0.42 -0.43 16 40 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 41 H 0.14 0.09 8.06 -52.49 -0.42 -0.34 16 42 H 0.14 0.10 8.06 -52.49 -0.42 -0.33 16 LS Contribution 355.52 15.07 5.36 5.36 Total: 0.00 -8.97 355.52 -9.37 -18.34 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: -5.22 Total: -10.09 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.62 Total: -2.76 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -1.82 Total: -5.47 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -5.06 Total: -5.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -8.97 -9.37 -18.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_764628_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.753 kcal (2) G-P(sol) polarization free energy of solvation -8.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds