Wall clock time and date at job start Sat Mar 6 2021 13:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38730 * 119.94247 * 0.57453 * 6 5 4 8 8 O 1.35905 * 120.05113 * 179.68140 * 7 6 5 9 9 C 1.42894 * 117.00217 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.47162 * 180.02562 * 9 8 7 11 11 C 1.50691 * 109.47322 * 179.97438 * 10 9 8 12 12 O 1.20831 * 120.00117 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00439 * 179.97438 * 11 10 9 14 14 C 1.45196 * 117.00572 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47390 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.84864 * 316.19184 * 15 14 13 17 17 C 1.53785 * 113.61425 * 87.50062 * 15 14 13 18 18 C 1.53783 * 87.08122 * 139.98074 * 17 15 14 19 19 H 1.09002 * 113.60917 * 89.11541 * 18 17 15 20 20 O 1.42894 * 113.61141 * 220.01588 * 18 17 15 21 21 C 1.53777 * 87.08291 * 334.56703 * 18 17 15 22 22 C 1.38728 * 119.89348 * 359.69988 * 7 6 5 23 23 C 1.38153 * 119.93918 * 0.02562 * 22 7 6 24 24 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 25 25 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 26 26 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 27 27 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 28 28 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 29 29 H 1.08006 * 120.02667 * 180.25271 * 6 5 4 30 30 H 1.09003 * 109.47358 * 299.99752 * 9 8 7 31 31 H 1.08997 * 109.47186 * 59.99912 * 9 8 7 32 32 H 1.09003 * 109.46597 * 299.99992 * 10 9 8 33 33 H 1.08997 * 109.47327 * 59.99773 * 10 9 8 34 34 H 1.09009 * 109.46643 * 300.00009 * 14 13 11 35 35 H 1.09001 * 109.47446 * 59.99409 * 14 13 11 36 36 H 1.09005 * 113.61064 * 254.52674 * 17 15 14 37 37 H 1.09000 * 113.61603 * 25.42871 * 17 15 14 38 38 H 0.96704 * 114.00197 * 277.49923 * 20 18 17 39 39 H 1.09001 * 113.61426 * 270.88894 * 21 18 17 40 40 H 1.08995 * 113.61642 * 139.97983 * 21 18 17 41 41 H 1.07991 * 120.03062 * 180.02562 * 22 7 6 42 42 H 1.08000 * 119.96925 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8532 -2.0145 -3.4893 8 8 3.3055 -2.6549 -4.5994 9 6 4.1222 -1.8998 -5.4965 10 6 4.5319 -2.7814 -6.6780 11 6 5.3926 -1.9849 -7.6244 12 8 5.6521 -0.8306 -7.3789 13 8 5.8718 -2.5580 -8.7396 14 6 6.6941 -1.7312 -9.6047 15 6 7.1452 -2.5507 -10.8153 16 1 7.4778 -3.5536 -10.5474 17 6 6.1469 -2.5225 -11.9848 18 6 7.3647 -2.4257 -12.9189 19 1 7.7565 -3.3950 -13.2273 20 8 7.1756 -1.5280 -14.0145 21 6 8.1239 -1.8024 -11.7358 22 6 2.0556 -2.6876 -2.5754 23 6 1.5963 -2.0340 -1.4482 24 1 -0.3933 0.4418 0.7650 25 1 1.7923 -0.5138 0.8900 26 1 3.5346 1.7703 0.0321 27 1 1.5616 2.4679 -1.2086 28 1 2.9776 0.9996 -1.9728 29 1 3.8086 -0.1602 -3.9787 30 1 3.5608 -1.0401 -5.8627 31 1 5.0141 -1.5552 -4.9733 32 1 5.0931 -3.6413 -6.3121 33 1 3.6398 -3.1256 -7.2011 34 1 6.1155 -0.8713 -9.9426 35 1 7.5690 -1.3864 -9.0534 36 1 5.5817 -3.4476 -12.0987 37 1 5.5147 -1.6347 -11.9980 38 1 6.6987 -1.9143 -14.7618 39 1 8.0322 -0.7177 -11.6808 40 1 9.1546 -2.1461 -11.6486 41 1 1.7939 -3.7215 -2.7449 42 1 0.9750 -2.5575 -0.7366 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_764628_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:01:46 Heat of formation + Delta-G solvation = -150.315422 kcal Electronic energy + Delta-G solvation = -24115.507424 eV Core-core repulsion = 20221.713782 eV Total energy + Delta-G solvation = -3893.793643 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89304 -41.34081 -40.31128 -39.25311 -37.81335 -37.25216 -36.03344 -33.74542 -32.25813 -31.72235 -29.75576 -26.85614 -26.74357 -25.81687 -24.02864 -23.32795 -22.28116 -21.79400 -20.60243 -19.74948 -18.77174 -18.57105 -18.37127 -18.08793 -17.35101 -17.26280 -17.10193 -16.77063 -16.42113 -15.88509 -15.58688 -15.37930 -15.33331 -14.85644 -14.53969 -14.44802 -14.12802 -13.96241 -13.73574 -13.69673 -13.52598 -13.11194 -13.01911 -12.79375 -12.51386 -12.47145 -12.24279 -12.06711 -12.01688 -11.85681 -11.82026 -11.69106 -11.26241 -10.78237 -10.32194 -10.20024 -9.34377 -4.98194 0.09650 0.15034 0.94781 1.15352 1.29193 1.60172 1.94809 2.18946 2.48800 3.18367 3.31572 3.36183 3.41693 3.49853 3.56092 3.65151 3.71380 3.72039 3.85797 3.90511 3.91838 4.07316 4.11621 4.14687 4.15556 4.28834 4.34963 4.41643 4.49096 4.52903 4.61981 4.64403 4.70167 4.74832 4.79530 4.93383 5.03208 5.06408 5.09029 5.21126 5.34817 5.35444 5.55859 6.14493 6.48517 6.84633 6.91917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.070 4.070 3 Si 0.770 3.230 4 C -0.129 4.129 5 C -0.103 4.103 6 C -0.211 4.211 7 C 0.124 3.876 8 O -0.313 6.313 9 C 0.068 3.932 10 C -0.105 4.105 11 C 0.472 3.528 12 O -0.542 6.542 13 O -0.350 6.350 14 C 0.076 3.924 15 C -0.103 4.103 16 H 0.120 0.880 17 C -0.163 4.163 18 C 0.075 3.925 19 H 0.105 0.895 20 O -0.583 6.583 21 C -0.126 4.126 22 C -0.150 4.150 23 C -0.054 4.054 24 H 0.404 0.596 25 H 0.098 0.902 26 H -0.291 1.291 27 H -0.302 1.302 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.396 0.604 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.154 0.846 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 -3.675 1.787 4.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.180 4.180 3 Si 0.677 3.323 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.229 4.229 7 C 0.078 3.922 8 O -0.227 6.227 9 C -0.008 4.008 10 C -0.142 4.142 11 C 0.317 3.683 12 O -0.432 6.432 13 O -0.266 6.266 14 C 0.002 3.998 15 C -0.122 4.122 16 H 0.138 0.862 17 C -0.201 4.201 18 C 0.016 3.984 19 H 0.122 0.878 20 O -0.392 6.392 21 C -0.163 4.163 22 C -0.169 4.169 23 C -0.072 4.072 24 H 0.255 0.745 25 H 0.116 0.884 26 H -0.219 1.219 27 H -0.231 1.231 28 H 0.134 0.866 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.246 0.754 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.171 0.829 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.400 -2.844 1.180 3.105 hybrid contribution 0.086 -0.085 -0.830 0.839 sum 0.487 -2.930 0.349 2.990 Atomic orbital electron populations 1.86437 1.17144 1.82327 1.51446 1.24673 0.85872 1.10294 0.97177 0.94557 0.77159 0.75926 0.84652 1.19665 1.00555 0.95477 0.97217 1.20809 0.98265 0.98714 0.94305 1.21327 1.06089 0.94906 1.00595 1.19110 0.94799 0.90987 0.87263 1.85945 1.65172 1.40257 1.31331 1.22486 0.94633 0.94049 0.89601 1.21092 1.01453 0.99073 0.92598 1.23662 0.77859 0.85998 0.80825 1.90716 1.57736 1.19890 1.74907 1.86474 1.62213 1.45319 1.32627 1.23212 0.93617 0.92994 0.89941 1.22365 0.97813 1.00941 0.91039 0.86164 1.23764 0.97468 1.03232 0.95654 1.23411 0.95983 0.93632 0.85357 0.87782 1.86485 1.80306 1.42575 1.29812 1.23110 0.99284 1.00865 0.93040 1.20797 1.00082 1.01954 0.94038 1.21081 0.96497 0.93240 0.96378 0.74520 0.88420 1.21897 1.23056 0.86639 0.84472 0.91381 0.91091 0.84069 0.84299 0.91572 0.90788 0.89699 0.90329 0.75398 0.90044 0.88971 0.82881 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.05 12.74 -148.98 -1.90 -1.95 16 2 C -0.07 -0.02 2.81 71.23 0.20 0.18 16 3 Si 0.77 -0.26 29.78 68.60 2.04 1.78 16 4 C -0.13 -0.78 5.42 -19.85 -0.11 -0.89 16 5 C -0.10 -0.84 8.66 22.26 0.19 -0.64 16 6 C -0.21 -1.56 9.04 22.37 0.20 -1.36 16 7 C 0.12 0.81 6.69 22.50 0.15 0.96 16 8 O -0.31 -1.37 10.14 -92.48 -0.94 -2.31 16 9 C 0.07 0.11 4.03 71.98 0.29 0.40 16 10 C -0.11 0.29 6.18 29.85 0.18 0.47 16 11 C 0.47 1.42 7.96 71.23 0.57 1.99 16 12 O -0.54 -5.29 15.73 21.95 0.35 -4.95 16 13 O -0.35 -0.69 10.22 -51.42 -0.53 -1.21 16 14 C 0.08 0.09 5.30 71.98 0.38 0.47 16 15 C -0.10 0.26 4.02 -10.27 -0.04 0.22 16 16 H 0.12 -0.57 8.14 -2.39 -0.02 -0.59 16 17 C -0.16 0.36 7.46 31.12 0.23 0.60 16 18 C 0.07 -0.16 5.21 31.12 0.16 0.00 16 19 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 20 O -0.58 -0.68 13.67 -148.98 -2.04 -2.71 16 21 C -0.13 0.20 7.47 31.12 0.23 0.44 16 22 C -0.15 -0.68 9.99 22.37 0.22 -0.46 16 23 C -0.05 -0.23 9.60 22.25 0.21 -0.02 16 24 H 0.40 -4.26 8.74 -74.06 -0.65 -4.91 16 25 H 0.10 -0.43 7.96 -2.39 -0.02 -0.44 16 26 H -0.29 -1.55 7.11 99.48 0.71 -0.84 16 27 H -0.30 -2.41 7.11 99.48 0.71 -1.70 16 28 H 0.12 0.89 4.87 -2.91 -0.01 0.87 16 29 H 0.14 0.74 6.30 -2.91 -0.02 0.72 16 30 H 0.07 0.20 7.62 -2.39 -0.02 0.18 16 31 H 0.07 0.17 7.62 -2.39 -0.02 0.15 16 32 H 0.14 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.14 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.07 0.19 7.84 -2.38 -0.02 0.18 16 35 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 36 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 37 H 0.08 0.04 7.90 -2.39 -0.02 0.02 16 38 H 0.40 -2.79 9.12 -74.05 -0.68 -3.47 16 39 H 0.08 0.09 8.10 -2.39 -0.02 0.07 16 40 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.15 0.07 8.06 -2.92 -0.02 0.05 16 42 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 Total: 0.00 -21.67 355.52 -0.16 -21.83 By element: Atomic # 1 Polarization: -12.60 SS G_CDS: -0.24 Total: -12.84 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 3.08 Total: 2.35 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -5.05 Total: -13.13 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.04 Total: 1.78 kcal Total: -21.67 -0.16 -21.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_764628_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.484 kcal (2) G-P(sol) polarization free energy of solvation -21.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds