Wall clock time and date at job start Sat Mar 6 2021 09:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47174 * 2 1 4 4 C 1.50700 * 109.46832 * 239.99692 * 2 1 3 5 5 C 1.38273 * 119.93960 * 119.73185 * 4 2 1 6 6 C 1.38147 * 120.05037 * 179.71994 * 5 4 2 7 7 C 1.38731 * 119.94264 * 0.54838 * 6 5 4 8 8 O 1.35906 * 120.05402 * 179.74474 * 7 6 5 9 9 C 1.42903 * 116.99698 * 359.97438 * 8 7 6 10 10 C 1.53006 * 109.46887 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47126 * 179.97438 * 10 9 8 12 12 O 1.20830 * 119.99853 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00008 * 180.02562 * 11 10 9 14 14 C 1.45203 * 116.99853 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.46736 * 179.97438 * 14 13 11 16 16 O 1.20762 * 120.00121 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99655 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.47613 * 314.06682 * 17 15 14 19 19 C 1.53011 * 109.47051 * 74.06542 * 17 15 14 20 20 C 1.52998 * 109.46779 * 60.00112 * 19 17 15 21 21 C 1.52996 * 109.47464 * 59.99824 * 20 19 17 22 22 H 1.09000 * 109.47102 * 60.00096 * 21 20 19 23 23 C 1.53001 * 109.47221 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47273 * 179.97438 * 23 21 20 25 25 F 1.39901 * 109.47363 * 300.00119 * 23 21 20 26 26 F 1.39898 * 109.46833 * 60.00213 * 23 21 20 27 27 C 1.52996 * 109.47255 * 299.99931 * 21 20 19 28 28 C 1.53001 * 109.47350 * 60.00060 * 27 21 20 29 29 C 1.38732 * 119.89187 * 359.72432 * 7 6 5 30 30 C 1.38145 * 119.94497 * 0.02562 * 29 7 6 31 31 H 0.96708 * 113.99624 * 60.00376 * 1 2 3 32 32 H 1.08996 * 109.46560 * 119.99687 * 2 1 3 33 33 H 1.48495 * 110.00179 * 59.99443 * 3 2 1 34 34 H 1.48493 * 109.99994 * 181.31820 * 3 2 1 35 35 H 1.07992 * 119.97353 * 359.97418 * 5 4 2 36 36 H 1.07993 * 120.02529 * 180.27316 * 6 5 4 37 37 H 1.08995 * 109.47325 * 299.99473 * 9 8 7 38 38 H 1.09000 * 109.47415 * 59.99698 * 9 8 7 39 39 H 1.08995 * 109.47005 * 300.00032 * 10 9 8 40 40 H 1.09000 * 109.47044 * 59.99833 * 10 9 8 41 41 H 1.08990 * 109.46901 * 299.99628 * 14 13 11 42 42 H 1.08995 * 109.47117 * 60.00143 * 14 13 11 43 43 H 1.09000 * 109.46808 * 179.97438 * 19 17 15 44 44 H 1.08990 * 109.46863 * 299.99902 * 19 17 15 45 45 H 1.09000 * 109.47359 * 299.99550 * 20 19 17 46 46 H 1.09008 * 109.46726 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.46769 * 299.99786 * 27 21 20 48 48 H 1.09004 * 109.46967 * 179.97438 * 27 21 20 49 49 H 1.08994 * 109.47316 * 180.02562 * 28 27 21 50 50 H 1.09000 * 109.46932 * 59.99881 * 28 27 21 51 51 H 1.08004 * 120.02524 * 179.97438 * 29 7 6 52 52 H 1.07995 * 119.97358 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7216 -0.0358 -2.1427 6 6 3.1880 -0.6865 -3.2685 7 6 2.8535 -2.0147 -3.4891 8 8 3.3069 -2.6555 -4.5985 9 6 4.1233 -1.9003 -5.4958 10 6 4.5354 -2.7828 -6.6758 11 6 5.3958 -1.9862 -7.6225 12 8 5.6535 -0.8312 -7.3781 13 8 5.8760 -2.5596 -8.7370 14 6 6.6980 -1.7326 -9.6022 15 6 7.1435 -2.5404 -10.7940 16 8 6.8029 -3.6938 -10.9031 17 6 8.0131 -1.9083 -11.8501 18 1 7.6139 -0.9281 -12.1107 19 6 9.4370 -1.7524 -11.3122 20 6 9.9974 -3.1283 -10.9464 21 6 10.0168 -4.0183 -12.1907 22 1 10.6458 -3.5612 -12.9546 23 6 10.5778 -5.3940 -11.8250 24 9 10.5951 -6.2081 -12.9627 25 9 11.8799 -5.2511 -11.3335 26 9 9.7710 -5.9810 -10.8444 27 6 8.5930 -4.1742 -12.7286 28 6 8.0325 -2.7984 -13.0945 29 6 2.0558 -2.6877 -2.5751 30 6 1.5961 -2.0341 -1.4482 31 1 -0.3933 0.4417 -0.7652 32 1 1.7923 -0.5138 0.8900 33 1 1.5615 2.4679 1.2084 34 1 3.5346 1.7702 -0.0321 35 1 2.9777 0.9995 -1.9728 36 1 3.8089 -0.1604 -3.9784 37 1 3.5614 -1.0414 -5.8628 38 1 5.0147 -1.5545 -4.9724 39 1 5.0974 -3.6414 -6.3085 40 1 3.6442 -3.1289 -7.1993 41 1 6.1190 -0.8737 -9.9410 42 1 7.5723 -1.3868 -9.0508 43 1 10.0660 -1.2957 -12.0762 44 1 9.4231 -1.1184 -10.4258 45 1 9.3685 -3.5855 -10.1825 46 1 11.0120 -3.0173 -10.5636 47 1 7.9641 -4.6314 -11.9647 48 1 8.6070 -4.8079 -13.6153 49 1 7.0181 -2.9094 -13.4772 50 1 8.6615 -2.3412 -13.8583 51 1 1.7937 -3.7216 -2.7449 52 1 0.9748 -2.5575 -0.7367 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_764628_12428076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:05:38 Heat of formation + Delta-G solvation = -314.522766 kcal Electronic energy + Delta-G solvation = -39528.257236 eV Core-core repulsion = 33624.142104 eV Total energy + Delta-G solvation = -5904.115132 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.158 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -51.16601 -48.65983 -48.64508 -42.06331 -41.43769 -41.11359 -39.25598 -38.45931 -37.59433 -37.16142 -33.71801 -33.45391 -32.11694 -31.97581 -31.50949 -30.13093 -27.13238 -26.57621 -25.71905 -23.99878 -23.85701 -23.44464 -22.33308 -22.05140 -21.71375 -20.18978 -19.65350 -19.31852 -19.25688 -18.77258 -18.61309 -18.18662 -18.15273 -17.69199 -17.19909 -17.01100 -16.64148 -16.53902 -16.37847 -15.96371 -15.86028 -15.65686 -15.58738 -15.42809 -15.17063 -15.10373 -14.86396 -14.81667 -14.80188 -14.73062 -14.51349 -14.49170 -14.45170 -14.30836 -13.83425 -13.81438 -13.53458 -13.50831 -13.24924 -13.21596 -12.96498 -12.89862 -12.86014 -12.20946 -12.18485 -12.10456 -12.05169 -11.97586 -11.82574 -11.80793 -11.69509 -11.39935 -11.27783 -10.42017 -10.29498 -10.05105 -9.22663 -5.00829 0.27032 0.29909 0.81231 0.96976 1.11351 1.32643 1.62350 1.75967 1.95740 2.20841 2.65330 2.75125 2.89183 2.94625 3.02512 3.42186 3.55462 3.56563 3.64262 3.68949 3.77764 3.80142 3.82296 3.86477 3.93854 3.96716 4.01354 4.09853 4.12903 4.17115 4.21643 4.27323 4.30343 4.39938 4.41469 4.49163 4.50437 4.55903 4.61333 4.69203 4.73244 4.83913 4.90628 4.96823 4.99435 5.10059 5.14329 5.15696 5.16768 5.20300 5.27106 5.38019 5.49162 5.70340 6.28963 6.40346 6.54126 6.78695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.068 4.068 3 Si 0.773 3.227 4 C -0.161 4.161 5 C -0.079 4.079 6 C -0.206 4.206 7 C 0.123 3.877 8 O -0.322 6.322 9 C 0.070 3.930 10 C -0.111 4.111 11 C 0.476 3.524 12 O -0.526 6.526 13 O -0.351 6.351 14 C 0.004 3.996 15 C 0.361 3.639 16 O -0.454 6.454 17 C -0.127 4.127 18 H 0.144 0.856 19 C -0.101 4.101 20 C -0.130 4.130 21 C -0.122 4.122 22 H 0.137 0.863 23 C 0.443 3.557 24 F -0.193 7.193 25 F -0.190 7.190 26 F -0.195 7.195 27 C -0.146 4.146 28 C -0.098 4.098 29 C -0.159 4.159 30 C -0.060 4.060 31 H 0.395 0.605 32 H 0.106 0.894 33 H -0.300 1.300 34 H -0.287 1.287 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.100 0.900 51 H 0.139 0.861 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 7.252 -5.017 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.178 4.178 3 Si 0.680 3.320 4 C -0.162 4.162 5 C -0.097 4.097 6 C -0.225 4.225 7 C 0.077 3.923 8 O -0.236 6.236 9 C -0.005 4.005 10 C -0.149 4.149 11 C 0.321 3.679 12 O -0.416 6.416 13 O -0.267 6.267 14 C -0.070 4.070 15 C 0.236 3.764 16 O -0.327 6.327 17 C -0.146 4.146 18 H 0.162 0.838 19 C -0.138 4.138 20 C -0.168 4.168 21 C -0.141 4.141 22 H 0.155 0.845 23 C 0.389 3.611 24 F -0.174 7.174 25 F -0.172 7.172 26 F -0.176 7.176 27 C -0.183 4.183 28 C -0.135 4.135 29 C -0.178 4.178 30 C -0.079 4.079 31 H 0.245 0.755 32 H 0.123 0.877 33 H -0.228 1.228 34 H -0.214 1.214 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.118 0.882 51 H 0.157 0.843 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.859 7.016 -4.144 8.194 hybrid contribution 0.433 -1.102 0.421 1.257 sum 1.292 5.914 -3.724 7.107 Atomic orbital electron populations 1.86462 1.17325 1.82165 1.50505 1.25081 0.85202 1.10535 0.97021 0.93767 0.77765 0.75650 0.84830 1.20341 1.01991 0.95609 0.98224 1.21014 0.95837 0.99883 0.92948 1.21439 1.05772 0.94154 1.01116 1.19149 0.94614 0.91562 0.86927 1.85953 1.65243 1.40712 1.31665 1.22494 0.94913 0.93883 0.89195 1.21105 1.01301 0.99295 0.93152 1.23534 0.77843 0.86102 0.80455 1.90710 1.57349 1.18982 1.74548 1.86579 1.62112 1.44997 1.33035 1.23866 0.97021 0.94979 0.91110 1.25005 0.77556 0.87771 0.86068 1.90371 1.47488 1.19326 1.75494 1.21829 0.96387 1.02609 0.93779 0.83840 1.21552 0.92984 0.95264 1.03980 1.21759 1.03465 0.96481 0.95078 1.22574 1.00440 0.88675 1.02435 0.84524 1.21210 0.75595 0.90221 0.74063 1.93162 1.96330 1.76475 1.51448 1.93166 1.39674 1.95984 1.88355 1.93162 1.73507 1.86733 1.64234 1.22044 0.93305 1.00237 1.02714 1.21398 1.02481 0.93059 0.96607 1.20664 1.00979 1.01536 0.94597 1.20952 0.97116 0.93780 0.96008 0.75522 0.87705 1.22792 1.21394 0.83662 0.83597 0.90220 0.90723 0.85110 0.84776 0.85571 0.86006 0.87242 0.88426 0.92663 0.89296 0.89502 0.91225 0.91071 0.88166 0.84302 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.28 12.77 -148.98 -1.90 -2.18 16 2 C -0.07 0.01 2.82 71.24 0.20 0.21 16 3 Si 0.77 -1.43 29.78 68.60 2.04 0.61 16 4 C -0.16 -0.11 5.39 -19.85 -0.11 -0.22 16 5 C -0.08 0.05 8.66 22.26 0.19 0.24 16 6 C -0.21 -0.09 9.04 22.37 0.20 0.12 16 7 C 0.12 0.33 6.69 22.51 0.15 0.48 16 8 O -0.32 -0.60 10.14 -92.49 -0.94 -1.53 16 9 C 0.07 -0.15 4.03 71.98 0.29 0.14 16 10 C -0.11 0.46 6.18 29.85 0.18 0.64 16 11 C 0.48 -0.20 7.96 71.24 0.57 0.36 16 12 O -0.53 -1.66 15.73 21.95 0.35 -1.32 16 13 O -0.35 -0.23 9.75 -45.00 -0.44 -0.67 16 14 C 0.00 -0.02 5.86 71.24 0.42 0.40 16 15 C 0.36 -1.32 5.11 29.10 0.15 -1.18 16 16 O -0.45 -2.16 13.38 17.39 0.23 -1.93 16 17 C -0.13 1.31 2.94 -11.54 -0.03 1.28 16 18 H 0.14 -2.34 8.14 -2.39 -0.02 -2.36 16 19 C -0.10 1.20 5.42 30.60 0.17 1.37 16 20 C -0.13 0.72 4.74 30.59 0.14 0.87 16 21 C -0.12 0.39 2.16 -10.80 -0.02 0.36 16 22 H 0.14 -1.07 8.14 -2.39 -0.02 -1.09 16 23 C 0.44 1.62 2.69 71.98 0.19 1.81 16 24 F -0.19 -1.17 16.80 44.97 0.76 -0.41 16 25 F -0.19 -0.89 16.80 44.97 0.76 -0.14 16 26 F -0.19 -1.56 16.28 44.97 0.73 -0.83 16 27 C -0.15 0.24 4.67 30.59 0.14 0.38 16 28 C -0.10 0.73 5.21 30.60 0.16 0.89 16 29 C -0.16 -0.39 9.99 22.37 0.22 -0.17 16 30 C -0.06 -0.11 9.60 22.25 0.21 0.11 16 31 H 0.39 -2.95 8.70 -74.05 -0.64 -3.59 16 32 H 0.11 0.12 7.96 -2.39 -0.02 0.10 16 33 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 34 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 35 H 0.15 -0.69 4.87 -2.91 -0.01 -0.70 16 36 H 0.15 -0.40 6.30 -2.91 -0.02 -0.41 16 37 H 0.08 -0.23 7.62 -2.39 -0.02 -0.24 16 38 H 0.07 -0.15 7.62 -2.39 -0.02 -0.17 16 39 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.13 -1.12 8.13 -2.39 -0.02 -1.14 16 42 H 0.12 -1.01 7.84 -2.39 -0.02 -1.03 16 43 H 0.11 -1.67 8.14 -2.39 -0.02 -1.69 16 44 H 0.10 -1.43 7.84 -2.39 -0.02 -1.44 16 45 H 0.05 -0.06 6.85 -2.39 -0.02 -0.08 16 46 H 0.09 -0.56 7.80 -2.38 -0.02 -0.58 16 47 H 0.09 0.37 4.73 -2.39 -0.01 0.36 16 48 H 0.07 -0.05 7.80 -2.39 -0.02 -0.07 16 49 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 50 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 51 H 0.14 0.08 8.06 -2.91 -0.02 0.05 16 52 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 Total: 0.00 -24.15 431.98 5.40 -18.76 By element: Atomic # 1 Polarization: -18.83 SS G_CDS: 0.38 Total: -18.45 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 3.43 Total: 8.10 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -2.70 Total: -7.63 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 2.24 Total: -1.38 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: 2.04 Total: 0.61 kcal Total: -24.15 5.40 -18.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_764628_12428076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -295.766 kcal (2) G-P(sol) polarization free energy of solvation -24.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -319.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -314.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds