Wall clock time and date at job start Sat Mar 6 2021 08:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86293 * 109.47397 * 2 1 4 4 C 1.50704 * 109.46583 * 120.00320 * 2 1 3 5 5 C 1.38261 * 119.94908 * 64.99865 * 4 2 1 6 6 C 1.38141 * 120.05766 * 179.97438 * 5 4 2 7 7 C 1.38737 * 119.94292 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.05206 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99605 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47220 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47277 * 180.02562 * 10 9 8 12 12 O 1.20823 * 120.00004 * 359.97438 * 11 10 9 13 13 O 1.34236 * 119.99830 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99933 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47077 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46952 * 305.00011 * 15 14 13 17 17 C 1.52996 * 109.47131 * 65.00317 * 15 14 13 18 18 C 1.52997 * 109.47131 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46991 * 299.99311 * 18 17 15 20 20 H 1.08993 * 109.47839 * 300.00447 * 19 18 17 21 21 O 1.42895 * 109.46957 * 179.97438 * 19 18 17 22 22 C 1.53006 * 109.46626 * 60.00378 * 19 18 17 23 23 C 1.52997 * 109.47127 * 299.99539 * 22 19 18 24 24 C 1.38729 * 119.89013 * 0.28032 * 7 6 5 25 25 C 1.38145 * 119.93978 * 359.46474 * 24 7 6 26 26 H 0.96702 * 114.00572 * 300.00554 * 1 2 3 27 27 H 1.08997 * 109.46832 * 239.99559 * 2 1 3 28 28 H 1.48504 * 110.00131 * 299.99851 * 3 2 1 29 29 H 1.48506 * 109.99968 * 61.31406 * 3 2 1 30 30 H 1.07997 * 119.96768 * 359.97438 * 5 4 2 31 31 H 1.07996 * 120.02989 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.46956 * 60.00062 * 9 8 7 33 33 H 1.09004 * 109.47354 * 300.00438 * 9 8 7 34 34 H 1.09007 * 109.46976 * 59.99644 * 10 9 8 35 35 H 1.08997 * 109.46879 * 300.00385 * 10 9 8 36 36 H 1.09000 * 109.47013 * 59.99634 * 14 13 11 37 37 H 1.09006 * 109.46913 * 300.00096 * 14 13 11 38 38 H 1.09001 * 109.46993 * 300.00131 * 17 15 14 39 39 H 1.09000 * 109.47380 * 59.99237 * 17 15 14 40 40 H 1.09002 * 109.47153 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.47194 * 60.00154 * 18 17 15 42 42 H 0.96700 * 113.99916 * 60.00451 * 21 19 18 43 43 H 1.09001 * 109.46801 * 59.99811 * 22 19 18 44 44 H 1.09001 * 109.46998 * 179.97438 * 22 19 18 45 45 H 1.09002 * 109.47153 * 180.02562 * 23 22 19 46 46 H 1.08996 * 109.46952 * 300.00302 * 23 22 19 47 47 H 1.07999 * 120.03235 * 179.72236 * 24 7 6 48 48 H 1.08002 * 119.96855 * 180.23639 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 1.6838 -2.0606 1.3973 6 6 2.1436 -2.7142 2.5241 7 6 2.8546 -2.0149 3.4886 8 8 3.3084 -2.6559 4.5977 9 6 4.0323 -1.8728 5.5489 10 6 4.4596 -2.7596 6.7202 11 6 5.2225 -1.9336 7.7235 12 8 5.4062 -0.7565 7.5222 13 8 5.6989 -2.5059 8.8404 14 6 6.4246 -1.6499 9.7617 15 6 6.8862 -2.4726 10.9663 16 1 6.0271 -2.9682 11.4184 17 6 7.8987 -3.5240 10.5079 18 6 8.3608 -4.3463 11.7126 19 6 9.0159 -3.4214 12.7403 20 1 9.8747 -2.9258 12.2877 21 8 9.4470 -4.1894 13.8656 22 6 8.0033 -2.3700 13.1986 23 6 7.5413 -1.5477 11.9940 24 6 3.0969 -0.6592 3.3215 25 6 2.6395 -0.0114 2.1903 26 1 -0.3934 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 1.5616 2.4678 -1.2085 29 1 1.5878 2.4585 1.2242 30 1 1.1307 -2.6045 0.6459 31 1 1.9498 -3.7686 2.6541 32 1 3.3962 -1.0673 5.9157 33 1 4.9167 -1.4491 5.0729 34 1 5.0958 -3.5649 6.3529 35 1 3.5754 -3.1835 7.1962 36 1 5.7721 -0.8451 10.1004 37 1 7.2925 -1.2259 9.2567 38 1 7.4321 -4.1826 9.7753 39 1 8.7577 -3.0284 10.0556 40 1 9.0818 -5.0957 11.3859 41 1 7.5020 -4.8420 12.1651 42 1 10.0913 -4.8770 13.6489 43 1 7.1445 -2.8657 13.6512 44 1 8.4699 -1.7113 13.9312 45 1 6.8202 -0.7983 12.3206 46 1 8.4001 -1.0521 11.5415 47 1 3.6462 -0.1117 4.0730 48 1 2.8312 1.0432 2.0579 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_764628_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:21:17 Heat of formation + Delta-G solvation = -194.998511 kcal Electronic energy + Delta-G solvation = -27990.003736 eV Core-core repulsion = 23783.197251 eV Total energy + Delta-G solvation = -4206.806485 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79408 -41.22891 -40.16757 -39.27205 -37.92232 -37.26648 -36.61539 -33.70173 -32.18301 -31.95001 -31.91530 -31.43662 -27.41149 -26.38920 -25.56493 -23.97057 -23.64244 -22.46880 -22.23230 -21.71781 -20.96670 -19.64438 -18.69437 -18.27929 -18.17772 -18.04102 -17.37079 -17.07929 -17.01433 -16.53845 -16.36173 -16.09027 -15.66602 -15.58210 -15.41788 -14.95138 -14.76070 -14.66375 -14.49785 -14.31925 -14.19962 -13.88792 -13.64667 -13.45001 -13.34458 -13.19083 -13.01433 -12.96094 -12.62377 -12.25289 -12.20092 -12.08868 -12.00520 -11.89856 -11.80295 -11.67594 -11.56016 -11.54305 -11.21281 -10.79486 -10.57025 -10.03327 -9.22665 -4.95903 0.28950 0.31371 1.03507 1.20300 1.29801 1.59081 1.96541 2.27177 2.65726 3.07638 3.31219 3.40146 3.48723 3.52535 3.62419 3.66894 3.69238 3.78287 3.80136 3.91345 3.94925 4.04431 4.11646 4.17308 4.22929 4.25321 4.28047 4.33811 4.34402 4.36529 4.42853 4.48795 4.52727 4.56149 4.67072 4.70930 4.82616 4.93494 4.95508 4.95897 5.04110 5.04299 5.17073 5.19275 5.25428 5.28371 5.35430 5.49933 5.69722 6.29019 6.41925 6.57079 6.65130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.069 4.069 3 Si 0.683 3.317 4 C -0.155 4.155 5 C -0.052 4.052 6 C -0.149 4.149 7 C 0.137 3.863 8 O -0.313 6.313 9 C 0.070 3.930 10 C -0.115 4.115 11 C 0.470 3.530 12 O -0.507 6.507 13 O -0.351 6.351 14 C 0.071 3.929 15 C -0.089 4.089 16 H 0.087 0.913 17 C -0.112 4.112 18 C -0.152 4.152 19 C 0.102 3.898 20 H 0.055 0.945 21 O -0.569 6.569 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.203 4.203 25 C -0.077 4.077 26 H 0.376 0.624 27 H 0.118 0.882 28 H -0.257 1.257 29 H -0.261 1.261 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.379 0.621 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.134 0.866 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.127 -1.479 0.817 3.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.179 4.179 3 Si 0.584 3.416 4 C -0.156 4.156 5 C -0.071 4.071 6 C -0.168 4.168 7 C 0.092 3.908 8 O -0.227 6.227 9 C -0.005 4.005 10 C -0.153 4.153 11 C 0.313 3.687 12 O -0.395 6.395 13 O -0.268 6.268 14 C -0.002 4.002 15 C -0.108 4.108 16 H 0.105 0.895 17 C -0.150 4.150 18 C -0.190 4.190 19 C 0.044 3.956 20 H 0.073 0.927 21 O -0.375 6.375 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.221 4.221 25 C -0.095 4.095 26 H 0.223 0.777 27 H 0.135 0.865 28 H -0.182 1.182 29 H -0.186 1.186 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.226 0.774 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.151 0.849 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.655 -0.382 0.615 2.752 hybrid contribution -0.525 -0.235 0.351 0.674 sum 2.130 -0.616 0.966 2.419 Atomic orbital electron populations 1.86598 1.17834 1.79936 1.49326 1.24938 0.83845 1.10759 0.98393 0.95019 0.91722 0.74705 0.80111 1.20184 1.02560 0.95114 0.97717 1.20846 0.96485 0.93460 0.96259 1.20511 1.01603 1.00894 0.93745 1.18984 0.94258 0.90943 0.86655 1.85969 1.69053 1.38267 1.29407 1.22445 0.96743 0.93180 0.88177 1.21088 1.02183 0.99058 0.92952 1.23193 0.77026 0.87008 0.81462 1.90720 1.55244 1.17268 1.76259 1.86464 1.65828 1.43739 1.30760 1.23219 0.95791 0.92464 0.88746 1.21282 0.99303 0.96540 0.93671 0.89509 1.21533 0.98450 0.97425 0.97572 1.22277 1.01723 0.98595 0.96404 1.21848 0.96078 0.91627 0.86088 0.92694 1.86520 1.64702 1.51607 1.34653 1.21442 0.98921 0.96881 0.97643 1.21477 1.00870 0.97559 0.94908 1.21252 1.06440 0.93807 1.00644 1.20857 0.96213 0.99460 0.92935 0.77687 0.86467 1.18220 1.18637 0.84854 0.84767 0.90703 0.90573 0.86172 0.86217 0.90740 0.90774 0.90675 0.91694 0.91447 0.90871 0.77360 0.90890 0.90744 0.90649 0.91159 0.84859 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.77 12.83 -35.23 -0.45 -1.22 16 2 C -0.07 0.00 2.80 36.01 0.10 0.10 16 3 Si 0.68 -0.44 29.88 -169.99 -5.08 -5.52 16 4 C -0.16 -0.06 5.35 -104.60 -0.56 -0.62 16 5 C -0.05 -0.03 9.68 -39.61 -0.38 -0.42 16 6 C -0.15 -0.13 9.99 -39.43 -0.39 -0.53 16 7 C 0.14 0.17 6.69 -39.22 -0.26 -0.09 16 8 O -0.31 -0.26 10.14 -19.44 -0.20 -0.46 16 9 C 0.07 -0.06 4.03 37.16 0.15 0.09 16 10 C -0.12 0.25 6.18 -27.88 -0.17 0.08 16 11 C 0.47 0.09 7.96 36.00 0.29 0.38 16 12 O -0.51 -1.49 15.73 -18.75 -0.29 -1.79 16 13 O -0.35 0.03 9.76 -39.27 -0.38 -0.35 16 14 C 0.07 -0.07 4.84 37.16 0.18 0.11 16 15 C -0.09 0.16 2.44 -90.62 -0.22 -0.06 16 16 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 17 C -0.11 0.21 5.10 -26.73 -0.14 0.07 16 18 C -0.15 0.24 5.54 -26.73 -0.15 0.10 16 19 C 0.10 -0.08 3.47 -26.73 -0.09 -0.17 16 20 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 21 O -0.57 -0.36 13.32 -35.23 -0.47 -0.82 16 22 C -0.11 0.09 5.57 -26.73 -0.15 -0.06 16 23 C -0.11 0.24 5.20 -26.73 -0.14 0.10 16 24 C -0.20 -0.12 9.04 -39.43 -0.36 -0.47 16 25 C -0.08 -0.01 8.66 -39.60 -0.34 -0.36 16 26 H 0.38 -0.47 8.70 45.56 0.40 -0.07 16 27 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H -0.26 -0.68 7.11 56.52 0.40 -0.28 16 29 H -0.26 -0.34 7.01 56.52 0.40 0.06 16 30 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 31 H 0.13 -0.04 8.06 -52.49 -0.42 -0.46 16 32 H 0.07 -0.05 7.61 -51.93 -0.40 -0.45 16 33 H 0.08 -0.07 7.63 -51.93 -0.40 -0.46 16 34 H 0.12 -0.42 8.14 -51.93 -0.42 -0.84 16 35 H 0.12 -0.40 8.14 -51.93 -0.42 -0.82 16 36 H 0.07 -0.06 8.13 -51.93 -0.42 -0.49 16 37 H 0.07 -0.06 8.13 -51.93 -0.42 -0.49 16 38 H 0.07 -0.11 7.82 -51.93 -0.41 -0.51 16 39 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 41 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 42 H 0.38 -1.21 9.08 45.56 0.41 -0.80 16 43 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 44 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 45 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 46 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 47 H 0.13 -0.09 6.30 -52.49 -0.33 -0.42 16 48 H 0.13 -0.17 4.84 -52.49 -0.25 -0.43 16 LS Contribution 390.19 15.07 5.88 5.88 Total: 0.00 -7.65 390.19 -10.56 -18.21 By element: Atomic # 1 Polarization: -5.26 SS G_CDS: -6.93 Total: -12.19 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.64 Total: -1.74 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -1.80 Total: -4.65 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: -5.08 Total: -5.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -7.65 -10.56 -18.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_764628_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.784 kcal (2) G-P(sol) polarization free energy of solvation -7.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds