Wall clock time and date at job start Sat Mar 6 2021 08:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86293 * 109.47397 * 2 1 4 4 C 1.50704 * 109.46583 * 120.00320 * 2 1 3 5 5 C 1.38261 * 119.94908 * 64.99865 * 4 2 1 6 6 C 1.38141 * 120.05766 * 179.97438 * 5 4 2 7 7 C 1.38737 * 119.94292 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.05206 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99605 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47220 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47277 * 180.02562 * 10 9 8 12 12 O 1.20823 * 120.00004 * 359.97438 * 11 10 9 13 13 O 1.34236 * 119.99830 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99933 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47077 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46952 * 305.00011 * 15 14 13 17 17 C 1.52996 * 109.47131 * 65.00317 * 15 14 13 18 18 C 1.52997 * 109.47131 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46991 * 299.99311 * 18 17 15 20 20 H 1.08993 * 109.47839 * 300.00447 * 19 18 17 21 21 O 1.42895 * 109.46957 * 179.97438 * 19 18 17 22 22 C 1.53006 * 109.46626 * 60.00378 * 19 18 17 23 23 C 1.52997 * 109.47127 * 299.99539 * 22 19 18 24 24 C 1.38729 * 119.89013 * 0.28032 * 7 6 5 25 25 C 1.38145 * 119.93978 * 359.46474 * 24 7 6 26 26 H 0.96702 * 114.00572 * 300.00554 * 1 2 3 27 27 H 1.08997 * 109.46832 * 239.99559 * 2 1 3 28 28 H 1.48504 * 110.00131 * 299.99851 * 3 2 1 29 29 H 1.48506 * 109.99968 * 61.31406 * 3 2 1 30 30 H 1.07997 * 119.96768 * 359.97438 * 5 4 2 31 31 H 1.07996 * 120.02989 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.46956 * 60.00062 * 9 8 7 33 33 H 1.09004 * 109.47354 * 300.00438 * 9 8 7 34 34 H 1.09007 * 109.46976 * 59.99644 * 10 9 8 35 35 H 1.08997 * 109.46879 * 300.00385 * 10 9 8 36 36 H 1.09000 * 109.47013 * 59.99634 * 14 13 11 37 37 H 1.09006 * 109.46913 * 300.00096 * 14 13 11 38 38 H 1.09001 * 109.46993 * 300.00131 * 17 15 14 39 39 H 1.09000 * 109.47380 * 59.99237 * 17 15 14 40 40 H 1.09002 * 109.47153 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.47194 * 60.00154 * 18 17 15 42 42 H 0.96700 * 113.99916 * 60.00451 * 21 19 18 43 43 H 1.09001 * 109.46801 * 59.99811 * 22 19 18 44 44 H 1.09001 * 109.46998 * 179.97438 * 22 19 18 45 45 H 1.09002 * 109.47153 * 180.02562 * 23 22 19 46 46 H 1.08996 * 109.46952 * 300.00302 * 23 22 19 47 47 H 1.07999 * 120.03235 * 179.72236 * 24 7 6 48 48 H 1.08002 * 119.96855 * 180.23639 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 1.6838 -2.0606 1.3973 6 6 2.1436 -2.7142 2.5241 7 6 2.8546 -2.0149 3.4886 8 8 3.3084 -2.6559 4.5977 9 6 4.0323 -1.8728 5.5489 10 6 4.4596 -2.7596 6.7202 11 6 5.2225 -1.9336 7.7235 12 8 5.4062 -0.7565 7.5222 13 8 5.6989 -2.5059 8.8404 14 6 6.4246 -1.6499 9.7617 15 6 6.8862 -2.4726 10.9663 16 1 6.0271 -2.9682 11.4184 17 6 7.8987 -3.5240 10.5079 18 6 8.3608 -4.3463 11.7126 19 6 9.0159 -3.4214 12.7403 20 1 9.8747 -2.9258 12.2877 21 8 9.4470 -4.1894 13.8656 22 6 8.0033 -2.3700 13.1986 23 6 7.5413 -1.5477 11.9940 24 6 3.0969 -0.6592 3.3215 25 6 2.6395 -0.0114 2.1903 26 1 -0.3934 0.4418 0.7650 27 1 1.7923 -0.5139 -0.8899 28 1 1.5616 2.4678 -1.2085 29 1 1.5878 2.4585 1.2242 30 1 1.1307 -2.6045 0.6459 31 1 1.9498 -3.7686 2.6541 32 1 3.3962 -1.0673 5.9157 33 1 4.9167 -1.4491 5.0729 34 1 5.0958 -3.5649 6.3529 35 1 3.5754 -3.1835 7.1962 36 1 5.7721 -0.8451 10.1004 37 1 7.2925 -1.2259 9.2567 38 1 7.4321 -4.1826 9.7753 39 1 8.7577 -3.0284 10.0556 40 1 9.0818 -5.0957 11.3859 41 1 7.5020 -4.8420 12.1651 42 1 10.0913 -4.8770 13.6489 43 1 7.1445 -2.8657 13.6512 44 1 8.4699 -1.7113 13.9312 45 1 6.8202 -0.7983 12.3206 46 1 8.4001 -1.0521 11.5415 47 1 3.6462 -0.1117 4.0730 48 1 2.8312 1.0432 2.0579 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_764628_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:21:16 Heat of formation + Delta-G solvation = -192.315041 kcal Electronic energy + Delta-G solvation = -27989.887372 eV Core-core repulsion = 23783.197251 eV Total energy + Delta-G solvation = -4206.690121 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79673 -41.22673 -40.08573 -39.27398 -37.93126 -37.30284 -36.57904 -33.63947 -32.16449 -31.87775 -31.82763 -31.42686 -27.36105 -26.37041 -25.51523 -23.87313 -23.61310 -22.41914 -22.20235 -21.67567 -20.85467 -19.62958 -18.70592 -18.26766 -18.17104 -18.00500 -17.34013 -17.03797 -17.01583 -16.50102 -16.34027 -16.10802 -15.63468 -15.51576 -15.35302 -14.87135 -14.76414 -14.58226 -14.47179 -14.34011 -14.15942 -13.85162 -13.61494 -13.50060 -13.22123 -13.11189 -12.95175 -12.88768 -12.56171 -12.28831 -12.14460 -12.08354 -11.96736 -11.84318 -11.72124 -11.64017 -11.59164 -11.50139 -11.10288 -10.71413 -10.59731 -10.04498 -9.24518 -4.93545 0.26771 0.30062 1.03976 1.26080 1.31369 1.57720 1.93937 2.31435 2.64031 3.20657 3.40342 3.44271 3.60444 3.63226 3.71616 3.73896 3.81379 3.82037 3.85474 3.95654 4.04163 4.15171 4.21090 4.26523 4.30106 4.34462 4.36501 4.41016 4.47256 4.48136 4.54805 4.58006 4.59289 4.64737 4.75083 4.80403 4.95261 4.97124 5.04888 5.07529 5.14573 5.16656 5.17110 5.26444 5.30144 5.33336 5.45099 5.48953 5.70319 6.28925 6.48653 6.57902 6.85724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.075 4.075 3 Si 0.761 3.239 4 C -0.158 4.158 5 C -0.059 4.059 6 C -0.158 4.158 7 C 0.124 3.876 8 O -0.319 6.319 9 C 0.069 3.931 10 C -0.108 4.108 11 C 0.473 3.527 12 O -0.538 6.538 13 O -0.353 6.353 14 C 0.070 3.930 15 C -0.083 4.083 16 H 0.083 0.917 17 C -0.110 4.110 18 C -0.147 4.147 19 C 0.099 3.901 20 H 0.061 0.939 21 O -0.591 6.591 22 C -0.113 4.113 23 C -0.106 4.106 24 C -0.209 4.209 25 C -0.081 4.081 26 H 0.385 0.615 27 H 0.126 0.874 28 H -0.303 1.303 29 H -0.285 1.285 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.393 0.607 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.142 0.858 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -1.901 0.720 4.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.185 4.185 3 Si 0.667 3.333 4 C -0.158 4.158 5 C -0.077 4.077 6 C -0.176 4.176 7 C 0.078 3.922 8 O -0.233 6.233 9 C -0.006 4.006 10 C -0.145 4.145 11 C 0.317 3.683 12 O -0.429 6.429 13 O -0.269 6.269 14 C -0.004 4.004 15 C -0.102 4.102 16 H 0.101 0.899 17 C -0.147 4.147 18 C -0.184 4.184 19 C 0.041 3.959 20 H 0.079 0.921 21 O -0.399 6.399 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.227 4.227 25 C -0.099 4.099 26 H 0.234 0.766 27 H 0.144 0.856 28 H -0.231 1.231 29 H -0.212 1.212 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.243 0.757 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.160 0.840 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.078 -0.840 0.536 3.235 hybrid contribution -0.666 -0.099 0.394 0.780 sum 2.412 -0.939 0.930 2.750 Atomic orbital electron populations 1.86568 1.18659 1.80315 1.50161 1.25111 0.83276 1.11400 0.98668 0.94119 0.90480 0.72494 0.76194 1.20250 1.02569 0.95154 0.97863 1.20990 0.96566 0.93706 0.96417 1.20677 1.01673 1.01418 0.93840 1.19161 0.94662 0.91357 0.86980 1.85947 1.69226 1.38645 1.29493 1.22485 0.96486 0.93350 0.88300 1.21100 1.02769 0.98704 0.91948 1.23596 0.76426 0.86730 0.81504 1.90709 1.56578 1.18674 1.76891 1.86469 1.65756 1.43867 1.30788 1.23275 0.95702 0.92537 0.88860 1.21224 0.99202 0.96457 0.93295 0.89893 1.21512 0.98525 0.97311 0.97379 1.22213 1.01488 0.98582 0.96145 1.21924 0.96317 0.91707 0.85952 0.92064 1.86481 1.65410 1.52375 1.35675 1.21456 0.98617 0.96956 0.98020 1.21440 1.01193 0.97387 0.94311 1.21416 1.06502 0.93783 1.01019 1.21032 0.96005 1.00124 0.92733 0.76573 0.85638 1.23131 1.21190 0.84187 0.84022 0.91083 0.90664 0.84438 0.84706 0.90928 0.90776 0.90865 0.91234 0.90566 0.91799 0.75723 0.91791 0.91304 0.90143 0.90543 0.84009 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.60 12.83 -148.98 -1.91 -3.51 16 2 C -0.08 0.02 2.80 71.24 0.20 0.22 16 3 Si 0.76 -0.97 29.88 68.60 2.05 1.08 16 4 C -0.16 -0.10 5.35 -19.85 -0.11 -0.20 16 5 C -0.06 -0.07 9.68 22.25 0.22 0.15 16 6 C -0.16 -0.28 9.99 22.37 0.22 -0.06 16 7 C 0.12 0.32 6.69 22.51 0.15 0.47 16 8 O -0.32 -0.48 10.14 -92.47 -0.94 -1.41 16 9 C 0.07 -0.12 4.03 71.98 0.29 0.17 16 10 C -0.11 0.54 6.18 29.85 0.18 0.72 16 11 C 0.47 0.13 7.96 71.24 0.57 0.69 16 12 O -0.54 -3.38 15.73 21.97 0.35 -3.04 16 13 O -0.35 0.14 9.76 -51.47 -0.50 -0.36 16 14 C 0.07 -0.13 4.84 71.98 0.35 0.22 16 15 C -0.08 0.31 2.44 -10.79 -0.03 0.28 16 16 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 17 C -0.11 0.44 5.10 30.59 0.16 0.60 16 18 C -0.15 0.50 5.54 30.59 0.17 0.67 16 19 C 0.10 -0.15 3.47 30.60 0.11 -0.05 16 20 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 21 O -0.59 -0.84 13.32 -148.98 -1.98 -2.82 16 22 C -0.11 0.15 5.57 30.60 0.17 0.32 16 23 C -0.11 0.46 5.20 30.59 0.16 0.61 16 24 C -0.21 -0.23 9.04 22.37 0.20 -0.03 16 25 C -0.08 -0.01 8.66 22.26 0.19 0.19 16 26 H 0.39 -0.91 8.70 -74.06 -0.64 -1.56 16 27 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 29 H -0.29 -0.74 7.01 99.48 0.70 -0.04 16 30 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 31 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 32 H 0.07 -0.07 7.61 -2.39 -0.02 -0.09 16 33 H 0.08 -0.12 7.63 -2.38 -0.02 -0.14 16 34 H 0.14 -1.13 8.14 -2.38 -0.02 -1.15 16 35 H 0.14 -1.05 8.14 -2.39 -0.02 -1.07 16 36 H 0.07 -0.10 8.13 -2.39 -0.02 -0.12 16 37 H 0.07 -0.13 8.13 -2.38 -0.02 -0.14 16 38 H 0.07 -0.24 7.82 -2.39 -0.02 -0.26 16 39 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.39 -2.51 9.08 -74.06 -0.67 -3.18 16 43 H 0.06 0.02 8.14 -2.39 -0.02 0.01 16 44 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.14 -0.18 6.30 -2.91 -0.02 -0.20 16 48 H 0.14 -0.46 4.84 -2.91 -0.01 -0.48 16 Total: 0.00 -17.42 390.19 -0.06 -17.48 By element: Atomic # 1 Polarization: -12.07 SS G_CDS: -0.32 Total: -12.39 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 3.20 Total: 4.98 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -4.99 Total: -11.15 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: 2.05 Total: 1.08 kcal Total: -17.42 -0.06 -17.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_764628_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.836 kcal (2) G-P(sol) polarization free energy of solvation -17.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds