Wall clock time and date at job start Sat Mar 6 2021 09:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86298 * 109.47415 * 2 1 4 4 C 1.86305 * 109.46975 * 240.00034 * 2 1 3 5 5 C 1.86298 * 109.47281 * 120.00330 * 2 1 3 6 6 O 1.45197 * 109.47466 * 59.99809 * 5 2 1 7 7 C 1.34221 * 117.00431 * 74.99784 * 6 5 2 8 8 O 1.20826 * 119.99570 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47160 * 180.02562 * 9 7 6 11 11 O 1.42899 * 109.47433 * 179.97438 * 10 9 7 12 12 C 1.35893 * 117.00392 * 179.97438 * 11 10 9 13 13 C 1.38736 * 120.05957 * 180.02562 * 12 11 10 14 14 C 1.38138 * 119.94337 * 180.30421 * 13 12 11 15 15 C 1.38270 * 120.05794 * 359.46080 * 14 13 12 16 16 C 1.50697 * 119.94421 * 180.26220 * 15 14 13 17 17 O 1.42906 * 109.46937 * 245.25362 * 16 15 14 18 18 Si 1.86302 * 109.47317 * 5.25234 * 16 15 14 19 19 H 1.48501 * 109.46902 * 60.00145 * 18 16 15 20 20 H 1.48499 * 109.47319 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47238 * 300.00423 * 18 16 15 22 22 C 1.38259 * 120.10998 * 0.51383 * 15 14 13 23 23 C 1.38146 * 120.05869 * 359.76954 * 22 15 14 24 24 H 1.09010 * 109.46486 * 300.00002 * 1 2 3 25 25 H 1.08996 * 109.46982 * 59.99538 * 1 2 3 26 26 H 1.08995 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47389 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46829 * 300.00006 * 3 2 1 29 29 H 1.08994 * 109.47477 * 60.00166 * 3 2 1 30 30 H 1.09003 * 109.47082 * 300.00202 * 4 2 1 31 31 H 1.09000 * 109.47143 * 59.99479 * 4 2 1 32 32 H 1.08999 * 109.47369 * 180.02562 * 4 2 1 33 33 H 1.09010 * 109.47088 * 299.99299 * 5 2 1 34 34 H 1.09005 * 109.47495 * 179.97438 * 5 2 1 35 35 H 1.08994 * 109.47538 * 60.00313 * 9 7 6 36 36 H 1.09001 * 109.47535 * 299.99868 * 9 7 6 37 37 H 1.09002 * 109.47184 * 60.00178 * 10 9 7 38 38 H 1.09001 * 109.46987 * 299.99884 * 10 9 7 39 39 H 1.08002 * 120.02291 * 0.02562 * 13 12 11 40 40 H 1.08004 * 119.96766 * 179.69880 * 14 13 12 41 41 H 1.09001 * 109.47205 * 125.25472 * 16 15 14 42 42 H 0.96700 * 113.99400 * 60.00283 * 17 16 15 43 43 H 1.08006 * 119.97187 * 179.74376 * 22 15 14 44 44 H 1.07993 * 120.03340 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 2.0001 -2.2472 1.5211 7 6 2.5941 -3.1037 0.6754 8 8 3.4893 -2.7222 -0.0409 9 6 2.1446 -4.5409 0.6193 10 6 2.9786 -5.2960 -0.4177 11 8 2.5528 -6.6591 -0.4705 12 6 3.1961 -7.4729 -1.3483 13 6 2.8335 -8.8080 -1.4521 14 6 3.4933 -9.6346 -2.3407 15 6 4.5069 -9.1298 -3.1343 16 6 5.2210 -10.0325 -4.1071 17 8 6.5881 -10.1697 -3.7141 18 14 4.4056 -11.7076 -4.1134 19 1 2.9850 -11.5650 -4.5218 20 1 5.1089 -12.5969 -5.0724 21 1 4.4724 -12.2958 -2.7516 22 6 4.8698 -7.7995 -3.0332 23 6 4.2171 -6.9701 -2.1419 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.5741 1.7564 -0.0005 28 1 2.1207 2.2702 -0.8900 29 1 2.1208 2.2703 0.8899 30 1 2.1206 -1.9059 -1.5212 31 1 2.1205 -0.3645 -2.4112 32 1 3.5740 -0.8787 -1.5210 33 1 2.1208 -0.3644 2.4111 34 1 3.5741 -0.8787 1.5209 35 1 1.0921 -4.5819 0.3391 36 1 2.2783 -5.0020 1.5979 37 1 4.0311 -5.2552 -0.1371 38 1 2.8453 -4.8352 -1.3965 39 1 2.0391 -9.2017 -0.8355 40 1 3.2146 -10.6751 -2.4184 41 1 5.1719 -9.6007 -5.1067 42 1 6.7077 -10.5487 -2.8325 43 1 5.6646 -7.4086 -3.6512 44 1 4.5011 -5.9312 -2.0630 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_764628_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:35:43 Heat of formation + Delta-G solvation = -157.871734 kcal Electronic energy + Delta-G solvation = -23382.884657 eV Core-core repulsion = 19811.002577 eV Total energy + Delta-G solvation = -3571.882079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71665 -41.19328 -39.25572 -37.58714 -37.15919 -33.57982 -32.13475 -31.51988 -29.67358 -28.45465 -28.36331 -28.22300 -26.47621 -25.51518 -23.67299 -22.28562 -21.57868 -19.65862 -18.55321 -18.23576 -17.97050 -17.36081 -17.11000 -16.92406 -16.52854 -16.07809 -15.52606 -15.08216 -14.85851 -14.76699 -14.49935 -14.38631 -14.25161 -13.97200 -13.90720 -13.77352 -13.54641 -13.39034 -13.25930 -13.09068 -13.05084 -12.99734 -12.77950 -12.48376 -12.20126 -12.12907 -12.07058 -11.83291 -11.59952 -11.52761 -10.85819 -10.77148 -10.39623 -10.38090 -10.07513 -9.24138 0.22548 0.30649 1.08945 1.20236 1.30069 1.47101 1.54056 1.58776 1.89120 1.92131 1.93251 2.44567 2.55873 2.63235 3.46917 3.57670 3.72191 3.81231 3.81705 3.87321 4.01526 4.19990 4.24356 4.28234 4.37326 4.57610 4.58098 4.63378 4.70080 4.73314 4.75102 4.76661 4.79832 4.81309 4.82517 4.87703 4.97078 5.15780 5.28064 5.35052 5.46598 5.52252 5.59783 5.63625 5.66414 6.27856 6.67224 6.71887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.063 2.937 3 C -0.455 4.455 4 C -0.454 4.454 5 C -0.257 4.257 6 O -0.338 6.338 7 C 0.451 3.549 8 O -0.515 6.515 9 C -0.112 4.112 10 C 0.070 3.930 11 O -0.319 6.319 12 C 0.122 3.878 13 C -0.153 4.153 14 C -0.091 4.091 15 C -0.160 4.160 16 C -0.076 4.076 17 O -0.555 6.555 18 Si 0.982 3.018 19 H -0.257 1.257 20 H -0.277 1.277 21 H -0.249 1.249 22 C -0.058 4.058 23 C -0.213 4.213 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.388 0.612 43 H 0.136 0.864 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 1.069 2.135 3.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.255 2.745 3 C -0.563 4.563 4 C -0.560 4.560 5 C -0.374 4.374 6 O -0.253 6.253 7 C 0.295 3.705 8 O -0.405 6.405 9 C -0.149 4.149 10 C -0.005 4.005 11 O -0.233 6.233 12 C 0.077 3.923 13 C -0.171 4.171 14 C -0.108 4.108 15 C -0.161 4.161 16 C -0.186 4.186 17 O -0.362 6.362 18 Si 0.806 3.194 19 H -0.181 1.181 20 H -0.203 1.203 21 H -0.173 1.173 22 C -0.077 4.077 23 C -0.231 4.231 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.139 0.861 42 H 0.237 0.763 43 H 0.154 0.846 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.704 0.599 1.529 3.163 hybrid contribution 0.564 0.532 0.400 0.872 sum -2.140 1.130 1.930 3.095 Atomic orbital electron populations 1.26171 1.20523 1.04605 1.05045 0.78725 0.66492 0.65908 0.63389 1.26130 1.06430 1.18419 1.05349 1.26513 1.06151 1.07190 1.16130 1.28689 1.05163 0.83478 1.20074 1.86405 1.59052 1.21898 1.57959 1.23569 0.80285 0.89411 0.77206 1.90700 1.29915 1.78785 1.41119 1.21106 1.03750 0.86762 1.03258 1.22477 0.98893 0.79112 1.00013 1.85935 1.58834 1.21211 1.57346 1.19152 0.92217 0.90890 0.90018 1.20593 1.03446 0.90707 1.02404 1.21059 0.95100 0.99955 0.94721 1.20354 0.99324 0.95761 1.00667 1.24980 0.86319 1.07670 0.99667 1.86484 1.23347 1.86650 1.39707 0.85229 0.78598 0.74960 0.80569 1.18061 1.20280 1.17263 1.20973 0.97789 0.92575 0.96317 1.21505 0.99419 1.01713 1.00508 0.90342 0.90854 0.91439 0.91229 0.90590 0.90148 0.92636 0.91723 0.91894 0.85279 0.90684 0.84632 0.84866 0.91047 0.90909 0.83540 0.84184 0.86089 0.76268 0.84628 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.55 8.65 113.37 0.98 2.53 16 2 Si 1.06 -4.47 12.12 68.60 0.83 -3.63 16 3 C -0.46 1.79 8.65 113.37 0.98 2.77 16 4 C -0.45 -0.65 7.10 113.37 0.81 0.15 16 5 C -0.26 0.58 5.40 113.37 0.61 1.19 16 6 O -0.34 -0.15 9.92 -51.33 -0.51 -0.66 16 7 C 0.45 0.46 6.74 71.23 0.48 0.94 16 8 O -0.52 -2.74 11.66 21.96 0.26 -2.48 16 9 C -0.11 0.39 6.18 29.85 0.18 0.58 16 10 C 0.07 -0.02 4.03 71.98 0.29 0.27 16 11 O -0.32 -0.86 10.14 -92.34 -0.94 -1.80 16 12 C 0.12 0.46 6.69 22.51 0.15 0.61 16 13 C -0.15 -0.34 9.99 22.37 0.22 -0.11 16 14 C -0.09 -0.09 8.66 22.25 0.19 0.10 16 15 C -0.16 -0.24 5.35 -19.85 -0.11 -0.34 16 16 C -0.08 0.04 2.80 71.23 0.20 0.24 16 17 O -0.55 -0.58 12.83 -148.98 -1.91 -2.49 16 18 Si 0.98 -1.22 25.14 68.60 1.72 0.51 16 19 H -0.26 0.06 7.11 99.48 0.71 0.76 16 20 H -0.28 -0.70 7.11 99.48 0.71 0.01 16 21 H -0.25 0.45 7.03 99.48 0.70 1.15 16 22 C -0.06 -0.15 9.68 22.25 0.22 0.06 16 23 C -0.21 -0.67 9.04 22.37 0.20 -0.46 16 24 H 0.08 -0.36 7.96 -2.38 -0.02 -0.37 16 25 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 26 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 27 H 0.07 -0.22 7.96 -2.38 -0.02 -0.23 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.08 -0.44 7.96 -2.39 -0.02 -0.45 16 30 H 0.05 0.17 6.28 -2.39 -0.01 0.16 16 31 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 32 H 0.06 0.27 7.43 -2.39 -0.02 0.25 16 33 H 0.13 -0.82 7.96 -2.38 -0.02 -0.84 16 34 H 0.07 -0.06 7.52 -2.38 -0.02 -0.08 16 35 H 0.14 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.07 0.03 7.62 -2.39 -0.02 0.01 16 38 H 0.07 0.02 7.62 -2.39 -0.02 0.00 16 39 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 40 H 0.14 -0.34 4.86 -2.91 -0.01 -0.35 16 41 H 0.12 -0.23 7.96 -2.39 -0.02 -0.24 16 42 H 0.39 -2.05 8.70 -74.06 -0.64 -2.69 16 43 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 44 H 0.14 0.19 6.30 -2.91 -0.02 0.17 16 Total: 0.00 -13.35 362.40 5.96 -7.39 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: 1.09 Total: -5.36 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.41 Total: 8.53 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -3.10 Total: -7.44 kcal Atomic # 14 Polarization: -5.68 SS G_CDS: 2.56 Total: -3.13 kcal Total: -13.35 5.96 -7.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_764628_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.478 kcal (2) G-P(sol) polarization free energy of solvation -13.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds