Wall clock time and date at job start Sat Mar 6 2021 11:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 109.47118 * 2 1 4 4 C 1.86303 * 109.47220 * 240.00426 * 2 1 3 5 5 C 1.86794 * 109.47380 * 120.00266 * 2 1 3 6 6 C 1.38229 * 120.00392 * 89.99634 * 5 2 1 7 7 C 1.38234 * 120.00615 * 180.02562 * 6 5 2 8 8 C 1.38239 * 119.99681 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00049 * 179.97438 * 8 7 6 10 10 O 1.45206 * 109.47021 * 90.00000 * 9 8 7 11 11 C 1.34224 * 117.00077 * 180.02562 * 10 9 8 12 12 O 1.20833 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47581 * 180.02562 * 13 11 10 15 15 O 1.42900 * 109.47687 * 179.97438 * 14 13 11 16 16 C 1.35896 * 117.00385 * 179.97438 * 15 14 13 17 17 C 1.38733 * 120.05481 * 359.72533 * 16 15 14 18 18 C 1.38139 * 119.94491 * 179.74307 * 17 16 15 19 19 C 1.38273 * 120.05268 * 0.50494 * 18 17 16 20 20 C 1.50707 * 119.94099 * 179.74449 * 19 18 17 21 21 O 1.42892 * 109.46930 * 245.02290 * 20 19 18 22 22 Si 1.86297 * 109.47382 * 5.02690 * 20 19 18 23 23 H 1.48503 * 109.47382 * 59.99729 * 22 20 19 24 24 H 1.48496 * 109.47089 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46998 * 299.99906 * 22 20 19 26 26 C 1.38260 * 120.11473 * 359.76928 * 19 18 17 27 27 C 1.38151 * 120.05298 * 359.97438 * 26 19 18 28 28 C 1.38236 * 119.99618 * 0.24824 * 8 7 6 29 29 C 1.38231 * 120.00348 * 359.49741 * 28 8 7 30 30 H 1.08993 * 109.47055 * 299.99634 * 1 2 3 31 31 H 1.09003 * 109.47023 * 60.00078 * 1 2 3 32 32 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47404 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47567 * 300.00144 * 3 2 1 35 35 H 1.09001 * 109.47166 * 60.00245 * 3 2 1 36 36 H 1.09005 * 109.46656 * 299.99464 * 4 2 1 37 37 H 1.08997 * 109.47190 * 59.99193 * 4 2 1 38 38 H 1.08993 * 109.47404 * 180.02562 * 4 2 1 39 39 H 1.08006 * 120.00063 * 0.02562 * 6 5 2 40 40 H 1.07993 * 120.00649 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.47247 * 330.00049 * 9 8 7 42 42 H 1.09001 * 109.47358 * 209.99475 * 9 8 7 43 43 H 1.09009 * 109.46972 * 299.99362 * 13 11 10 44 44 H 1.08995 * 109.47473 * 59.99636 * 13 11 10 45 45 H 1.09005 * 109.46903 * 300.00018 * 14 13 11 46 46 H 1.09000 * 109.47608 * 59.99121 * 14 13 11 47 47 H 1.08004 * 120.02816 * 359.97438 * 17 16 15 48 48 H 1.08001 * 119.97818 * 180.23135 * 18 17 16 49 49 H 1.09004 * 109.46477 * 125.02687 * 20 19 18 50 50 H 0.96707 * 114.00025 * 180.02562 * 21 20 19 51 51 H 1.07993 * 119.97855 * 179.97438 * 26 19 18 52 52 H 1.07997 * 120.02839 * 179.97438 * 27 26 19 53 53 H 1.08004 * 119.99728 * 179.72715 * 28 8 7 54 54 H 1.08001 * 119.99970 * 180.22692 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2431 1.4909 7 6 3.1764 -2.8950 2.6197 8 6 3.4059 -2.1842 3.7829 9 6 3.9072 -2.8948 5.0137 10 8 5.3593 -2.8949 5.0148 11 6 5.9678 -3.4935 6.0507 12 8 5.3090 -4.0003 6.9277 13 6 7.4726 -3.5325 6.1205 14 6 7.9055 -4.2675 7.3906 15 8 9.3324 -4.3051 7.4566 16 6 9.8843 -4.9266 8.5317 17 6 9.0691 -5.4838 9.5063 18 6 9.6325 -6.1197 10.5956 19 6 11.0077 -6.1919 10.7203 20 6 11.6196 -6.8812 11.9127 21 8 12.3330 -5.9262 12.7006 22 14 10.2729 -7.6539 12.9421 23 1 9.5315 -8.6464 12.1232 24 1 10.8759 -8.3326 14.1173 25 1 9.3376 -6.5981 13.4069 26 6 11.8223 -5.6325 9.7534 27 6 11.2637 -5.0001 8.6594 28 6 3.1701 -0.8226 3.8187 29 6 2.7148 -0.1699 2.6885 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5740 1.7565 -0.0005 34 1 2.1207 2.2703 -0.8900 35 1 2.1207 2.2702 0.8900 36 1 2.1208 -1.9058 -1.5212 37 1 2.1206 -0.3643 -2.4111 38 1 3.5740 -0.8785 -1.5210 39 1 2.5364 -2.7986 0.5822 40 1 3.3560 -3.9595 2.5931 41 1 3.5439 -3.9225 5.0132 42 1 3.5433 -2.3811 5.9035 43 1 7.8634 -4.0555 5.2476 44 1 7.8621 -2.5147 6.1387 45 1 7.5146 -3.7450 8.2638 46 1 7.5160 -5.2854 7.3721 47 1 7.9949 -5.4238 9.4115 48 1 8.9984 -6.5569 11.3527 49 1 12.3061 -7.6561 11.5715 50 1 12.7543 -6.3007 13.4864 51 1 12.8961 -5.6898 9.8532 52 1 11.9004 -4.5629 7.9046 53 1 3.3452 -0.2680 4.7288 54 1 2.5342 0.8945 2.7155 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_764628_9435856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:59:35 Heat of formation + Delta-G solvation = -142.778773 kcal Electronic energy + Delta-G solvation = -31078.385848 eV Core-core repulsion = 26683.178449 eV Total energy + Delta-G solvation = -4395.207399 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 388.171 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.85293 -41.23410 -40.03530 -39.16874 -37.77078 -37.23503 -33.79349 -32.97647 -32.09487 -31.91043 -31.59070 -29.44851 -28.28900 -28.27026 -27.80851 -26.50691 -25.60902 -23.74079 -23.51382 -22.29266 -22.08690 -21.72064 -19.69427 -18.70721 -18.45015 -18.06578 -18.00933 -17.26680 -17.06244 -16.92826 -16.73360 -16.02145 -15.92809 -15.84385 -15.62543 -14.82505 -14.71936 -14.56942 -14.45567 -14.37563 -14.33786 -14.15817 -14.04749 -13.88548 -13.84154 -13.71431 -13.65817 -13.39339 -13.15626 -13.10779 -13.03388 -12.96235 -12.91223 -12.66626 -12.44141 -12.16439 -12.13196 -11.98220 -11.83057 -11.79731 -11.73133 -11.67551 -10.92478 -10.79648 -10.75433 -10.29622 -10.06631 -9.83268 -9.72078 -9.24049 0.06833 0.23979 0.27810 0.49622 0.96944 1.16418 1.31260 1.43351 1.48003 1.83039 1.89162 2.02674 2.07596 2.33131 2.60405 2.66486 2.94047 3.36850 3.49459 3.61489 3.71157 3.73155 3.78366 3.79873 3.85505 3.99753 4.10148 4.17746 4.18828 4.24956 4.29872 4.37905 4.47704 4.51235 4.53747 4.61310 4.68492 4.72350 4.84869 4.85011 4.89147 4.90023 4.90448 4.90953 4.93397 4.96233 5.13563 5.15181 5.19013 5.24072 5.38687 5.48125 5.53910 5.56757 5.59724 5.68083 5.68253 5.71278 6.09110 6.25694 6.50129 6.83891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.126 2.874 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.102 4.102 7 C -0.120 4.120 8 C -0.107 4.107 9 C 0.109 3.891 10 O -0.351 6.351 11 C 0.473 3.527 12 O -0.537 6.537 13 C -0.106 4.106 14 C 0.069 3.931 15 O -0.317 6.317 16 C 0.122 3.878 17 C -0.210 4.210 18 C -0.097 4.097 19 C -0.126 4.126 20 C -0.073 4.073 21 O -0.563 6.563 22 Si 0.971 3.029 23 H -0.261 1.261 24 H -0.252 1.252 25 H -0.275 1.275 26 C -0.055 4.055 27 C -0.155 4.155 28 C -0.120 4.120 29 C -0.102 4.102 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.140 0.860 48 H 0.128 0.872 49 H 0.098 0.902 50 H 0.398 0.602 51 H 0.150 0.850 52 H 0.148 0.852 53 H 0.128 0.872 54 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 0.244 -3.058 3.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.411 4.411 6 C -0.120 4.120 7 C -0.138 4.138 8 C -0.107 4.107 9 C 0.036 3.964 10 O -0.268 6.268 11 C 0.318 3.682 12 O -0.427 6.427 13 C -0.144 4.144 14 C -0.006 4.006 15 O -0.231 6.231 16 C 0.077 3.923 17 C -0.229 4.229 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.184 4.184 21 O -0.372 6.372 22 Si 0.796 3.204 23 H -0.185 1.185 24 H -0.176 1.176 25 H -0.200 1.200 26 C -0.073 4.073 27 C -0.173 4.173 28 C -0.138 4.138 29 C -0.120 4.120 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.156 0.844 44 H 0.155 0.845 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.158 0.842 48 H 0.145 0.855 49 H 0.116 0.884 50 H 0.248 0.752 51 H 0.167 0.833 52 H 0.165 0.835 53 H 0.146 0.854 54 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.348 0.173 -2.867 2.893 hybrid contribution -0.015 -0.434 0.780 0.893 sum -0.363 -0.261 -2.087 2.134 Atomic orbital electron populations 1.26290 1.21595 1.04472 1.04587 0.77183 0.65170 0.64674 0.61612 1.26278 1.06443 1.19337 1.04896 1.26274 1.06444 1.08494 1.15722 1.28088 1.02120 0.99633 1.11213 1.21405 0.97224 0.95199 0.98180 1.21381 0.99071 1.00494 0.92817 1.19582 1.01910 0.94654 0.94601 1.21933 0.75986 1.01491 0.97008 1.86565 1.23754 1.70842 1.45637 1.23658 0.92168 0.73794 0.78600 1.90711 1.68015 1.44416 1.39575 1.21101 0.86299 1.06490 1.00464 1.22471 0.78262 1.01642 0.98244 1.85939 1.22456 1.73056 1.41636 1.19137 0.93168 0.93289 0.86750 1.21357 1.00745 1.04385 0.96399 1.20983 0.94677 0.98163 0.97633 1.19487 0.93036 1.03003 0.97080 1.24633 1.03785 0.95361 0.94626 1.86465 1.71862 1.37073 1.41781 0.85411 0.77826 0.78183 0.78979 1.18510 1.17626 1.19977 1.21043 1.00931 0.93942 0.91395 1.20731 0.91725 1.04095 1.00795 1.21380 0.99100 0.93604 0.99711 1.21404 0.97257 1.00833 0.92522 0.91412 0.90645 0.91402 0.91268 0.90636 0.90902 0.90888 0.90631 0.91262 0.84078 0.85346 0.89967 0.90013 0.84416 0.84517 0.91069 0.90871 0.84245 0.85477 0.88428 0.75205 0.83273 0.83451 0.85385 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.86 8.65 113.37 0.98 2.84 16 2 Si 1.13 -7.00 12.32 68.60 0.85 -6.16 16 3 C -0.46 2.21 8.53 113.37 0.97 3.18 16 4 C -0.46 2.24 8.53 113.37 0.97 3.20 16 5 C -0.37 0.41 4.59 22.27 0.10 0.51 16 6 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 7 C -0.12 -0.26 9.70 22.27 0.22 -0.04 16 8 C -0.11 -0.36 5.52 -19.86 -0.11 -0.47 16 9 C 0.11 0.34 5.59 71.24 0.40 0.74 16 10 O -0.35 -1.37 10.20 -51.35 -0.52 -1.89 16 11 C 0.47 1.56 7.96 71.23 0.57 2.12 16 12 O -0.54 -4.83 15.73 21.94 0.35 -4.49 16 13 C -0.11 0.25 6.18 29.85 0.18 0.43 16 14 C 0.07 0.07 4.03 71.98 0.29 0.36 16 15 O -0.32 -1.25 10.14 -92.38 -0.94 -2.19 16 16 C 0.12 0.67 6.69 22.51 0.15 0.82 16 17 C -0.21 -1.11 9.04 22.36 0.20 -0.91 16 18 C -0.10 -0.51 8.66 22.25 0.19 -0.31 16 19 C -0.13 -0.53 5.39 -19.85 -0.11 -0.64 16 20 C -0.07 0.02 2.79 71.24 0.20 0.22 16 21 O -0.56 -0.29 12.81 -148.98 -1.91 -2.20 16 22 Si 0.97 0.07 25.14 68.60 1.72 1.80 16 23 H -0.26 -0.43 7.11 99.48 0.71 0.27 16 24 H -0.25 0.20 7.11 99.48 0.71 0.90 16 25 H -0.27 -1.15 7.04 99.48 0.70 -0.45 16 26 C -0.06 -0.18 9.68 22.25 0.22 0.04 16 27 C -0.16 -0.60 9.99 22.37 0.22 -0.38 16 28 C -0.12 -0.27 9.70 22.27 0.22 -0.05 16 29 C -0.10 -0.02 9.29 22.27 0.21 0.19 16 30 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 35 H 0.07 -0.38 7.69 -2.39 -0.02 -0.39 16 36 H 0.07 -0.38 7.69 -2.38 -0.02 -0.40 16 37 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 38 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 40 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 41 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 42 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 43 H 0.14 -0.77 8.14 -2.38 -0.02 -0.79 16 44 H 0.14 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.07 0.12 7.61 -2.38 -0.02 0.11 16 46 H 0.07 0.10 7.63 -2.39 -0.02 0.08 16 47 H 0.14 0.41 6.30 -2.91 -0.02 0.39 16 48 H 0.13 0.40 4.86 -2.91 -0.01 0.39 16 49 H 0.10 -0.47 7.96 -2.38 -0.02 -0.49 16 50 H 0.40 -3.43 8.74 -74.05 -0.65 -4.08 16 51 H 0.15 -0.08 8.06 -2.91 -0.02 -0.11 16 52 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 53 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 54 H 0.14 -0.59 7.43 -2.91 -0.02 -0.61 16 Total: 0.00 -18.39 451.13 6.81 -11.58 By element: Atomic # 1 Polarization: -9.52 SS G_CDS: 0.99 Total: -8.52 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.27 Total: 12.06 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -3.02 Total: -10.76 kcal Atomic # 14 Polarization: -6.93 SS G_CDS: 2.57 Total: -4.36 kcal Total: -18.39 6.81 -11.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_764628_9435856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.198 kcal (2) G-P(sol) polarization free energy of solvation -18.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds