Wall clock time and date at job start Sat Mar 6 2021 08:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86296 * 109.46865 * 2 1 4 4 C 1.86296 * 109.47243 * 239.99604 * 2 1 3 5 5 C 1.86807 * 109.46908 * 119.99796 * 2 1 3 6 6 C 1.38233 * 119.99875 * 90.00184 * 5 2 1 7 7 C 1.38237 * 119.99651 * 180.02562 * 6 5 2 8 8 C 1.38229 * 120.00189 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00313 * 179.97438 * 8 7 6 10 10 O 1.45196 * 109.47396 * 89.99381 * 9 8 7 11 11 C 1.34234 * 116.99938 * 180.02562 * 10 9 8 12 12 O 1.20826 * 119.99712 * 359.72483 * 11 10 9 13 13 C 1.50700 * 120.00068 * 180.02562 * 11 10 9 14 14 O 1.42898 * 109.46900 * 179.97438 * 13 11 10 15 15 C 1.35914 * 116.99629 * 180.02562 * 14 13 11 16 16 C 1.38703 * 120.04832 * 359.72340 * 15 14 13 17 17 C 1.38163 * 119.95491 * 179.70239 * 16 15 14 18 18 C 1.38320 * 120.04468 * 0.57150 * 17 16 15 19 19 Br 1.89106 * 119.95204 * 179.74249 * 18 17 16 20 20 C 1.38357 * 120.09201 * 359.73049 * 18 17 16 21 21 C 1.38119 * 120.04831 * 359.97034 * 20 18 17 22 22 C 1.50696 * 120.02762 * 180.02562 * 21 20 18 23 23 O 1.42902 * 109.47245 * 105.01934 * 22 21 20 24 24 Si 1.86302 * 109.47009 * 345.02080 * 22 21 20 25 25 H 1.48504 * 109.46853 * 60.00039 * 24 22 21 26 26 H 1.48501 * 109.47102 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47414 * 300.00180 * 24 22 21 28 28 C 1.38240 * 120.00082 * 0.25104 * 8 7 6 29 29 C 1.38234 * 119.99784 * 359.49714 * 28 8 7 30 30 H 1.08996 * 109.47396 * 300.00041 * 1 2 3 31 31 H 1.08995 * 109.47314 * 60.00163 * 1 2 3 32 32 H 1.09002 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46910 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47277 * 299.99535 * 3 2 1 35 35 H 1.09004 * 109.47455 * 59.99806 * 3 2 1 36 36 H 1.08997 * 109.47551 * 300.00194 * 4 2 1 37 37 H 1.08996 * 109.47039 * 60.00379 * 4 2 1 38 38 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 39 39 H 1.07997 * 120.00018 * 0.02562 * 6 5 2 40 40 H 1.08003 * 119.99717 * 179.97438 * 7 6 5 41 41 H 1.09012 * 109.46606 * 329.99364 * 9 8 7 42 42 H 1.08996 * 109.47079 * 209.99942 * 9 8 7 43 43 H 1.08992 * 109.47012 * 300.00044 * 13 11 10 44 44 H 1.08999 * 109.46550 * 59.99877 * 13 11 10 45 45 H 1.08003 * 120.02502 * 359.97438 * 16 15 14 46 46 H 1.08008 * 119.97700 * 180.29737 * 17 16 15 47 47 H 1.08007 * 119.98087 * 179.97438 * 20 18 17 48 48 H 1.08998 * 109.47403 * 225.02473 * 22 21 20 49 49 H 0.96697 * 113.99470 * 60.00376 * 23 22 21 50 50 H 1.08001 * 120.00133 * 179.72520 * 28 8 7 51 51 H 1.07995 * 120.00144 * 180.22961 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4055 -2.1840 3.7832 9 6 3.9067 -2.8945 5.0141 10 8 5.3587 -2.8947 5.0154 11 6 5.9671 -3.4933 6.0515 12 8 5.3081 -3.9959 6.9307 13 6 7.4719 -3.5324 6.1215 14 8 7.8758 -4.2178 7.3086 15 6 9.2119 -4.3413 7.5254 16 6 10.1150 -3.8187 6.6116 17 6 11.4727 -3.9399 6.8370 18 6 11.9316 -4.5922 7.9671 19 35 13.7905 -4.7630 8.2693 20 6 11.0324 -5.1197 8.8768 21 6 9.6743 -4.9953 8.6584 22 6 8.6954 -5.5695 9.6498 23 8 8.1190 -4.5112 10.4177 24 14 9.5826 -6.7494 10.7863 25 1 10.6554 -6.0241 11.5132 26 1 8.6180 -7.3148 11.7637 27 1 10.1816 -7.8492 9.9884 28 6 3.1697 -0.8224 3.8191 29 6 2.7144 -0.1698 2.6887 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1206 2.2702 -0.8900 35 1 2.1205 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3645 -2.4110 38 1 3.5740 -0.8779 -1.5212 39 1 2.5364 -2.7985 0.5824 40 1 3.3559 -3.9595 2.5934 41 1 3.5432 -3.9223 5.0137 42 1 3.5426 -2.3808 5.9037 43 1 7.8627 -4.0554 5.2488 44 1 7.8613 -2.5145 6.1397 45 1 9.7572 -3.3135 5.7266 46 1 12.1763 -3.5289 6.1280 47 1 11.3927 -5.6291 9.7584 48 1 7.9080 -6.1019 9.1163 49 1 7.6401 -3.8578 9.8896 50 1 3.3446 -0.2678 4.7292 51 1 2.5337 0.8946 2.7156 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_771800_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:45:07 Heat of formation + Delta-G solvation = -141.892226 kcal Electronic energy + Delta-G solvation = -32187.683361 eV Core-core repulsion = 27608.234022 eV Total energy + Delta-G solvation = -4579.449340 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 452.066 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09045 -41.39567 -40.09291 -39.00426 -37.53990 -37.51783 -33.38432 -33.14530 -32.75975 -31.99456 -30.88566 -29.67499 -29.42886 -28.51397 -28.47673 -27.27044 -26.85537 -24.14401 -23.59327 -22.63794 -22.40076 -22.04148 -19.82877 -18.75426 -18.38888 -18.25651 -18.19658 -17.59010 -17.03971 -16.87176 -16.69382 -16.10318 -15.94680 -15.86649 -15.61719 -15.37716 -14.81022 -14.65357 -14.47374 -14.38109 -14.24840 -14.19251 -14.14055 -13.95210 -13.89048 -13.83695 -13.50277 -13.33832 -13.32901 -13.16780 -13.04096 -12.98817 -12.84843 -12.75989 -12.19451 -12.18386 -11.79111 -11.78599 -11.69644 -11.47950 -11.41565 -11.20134 -11.11211 -10.98762 -10.97662 -10.92885 -10.25956 -9.88978 -9.80199 -9.38508 -0.11383 -0.07738 -0.03739 0.43835 0.56998 0.92194 0.92785 1.21409 1.52951 1.57527 1.61819 1.77482 1.85865 2.00845 2.20883 2.27283 2.46728 2.83443 3.26177 3.37567 3.48567 3.57474 3.60882 3.68611 3.70854 3.85972 3.88201 3.97450 4.00700 4.12618 4.14120 4.24481 4.35614 4.40210 4.50794 4.57986 4.63734 4.64758 4.68849 4.68883 4.69575 4.70488 4.82041 4.87629 4.88444 4.97269 5.04419 5.12511 5.22452 5.31103 5.38944 5.42267 5.47857 5.50201 5.52877 5.85597 5.99759 6.49508 6.62142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.359 4.359 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.094 4.094 9 C 0.112 3.888 10 O -0.347 6.347 11 C 0.464 3.536 12 O -0.480 6.480 13 C 0.066 3.934 14 O -0.290 6.290 15 C 0.155 3.845 16 C -0.199 4.199 17 C -0.043 4.043 18 C -0.119 4.119 19 Br -0.041 7.041 20 C -0.055 4.055 21 C -0.131 4.131 22 C -0.084 4.084 23 O -0.534 6.534 24 Si 1.005 2.995 25 H -0.248 1.248 26 H -0.250 1.250 27 H -0.245 1.245 28 C -0.105 4.105 29 C -0.091 4.091 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.143 0.857 48 H 0.082 0.918 49 H 0.370 0.630 50 H 0.122 0.878 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 2.296 -5.858 6.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.400 4.400 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.094 4.094 9 C 0.039 3.961 10 O -0.264 6.264 11 C 0.305 3.695 12 O -0.365 6.365 13 C -0.010 4.010 14 O -0.203 6.203 15 C 0.109 3.891 16 C -0.219 4.219 17 C -0.063 4.063 18 C -0.198 4.198 19 Br 0.045 6.955 20 C -0.075 4.075 21 C -0.133 4.133 22 C -0.192 4.192 23 O -0.340 6.340 24 Si 0.824 3.176 25 H -0.172 1.172 26 H -0.174 1.174 27 H -0.168 1.168 28 C -0.123 4.123 29 C -0.109 4.109 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.100 0.900 49 H 0.219 0.781 50 H 0.140 0.860 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.097 1.086 -4.273 4.410 hybrid contribution -0.884 0.785 -0.999 1.548 sum -0.982 1.871 -5.272 5.680 Atomic orbital electron populations 1.26125 1.20381 1.04627 1.04566 0.78194 0.66906 0.66146 0.63626 1.26136 1.06484 1.18510 1.04634 1.26135 1.06484 1.08064 1.15081 1.27521 1.02678 0.99535 1.10286 1.21095 0.97416 0.94671 0.97753 1.21165 0.98680 0.99911 0.92517 1.19446 1.01400 0.94248 0.94292 1.21946 0.75472 1.01637 0.97043 1.86508 1.23857 1.70957 1.45121 1.22785 0.90656 0.75973 0.80108 1.90764 1.66429 1.41487 1.37809 1.21955 0.89671 1.00340 0.89003 1.86047 1.20402 1.72757 1.41139 1.18785 0.81633 0.94899 0.93739 1.21297 0.93312 1.06076 1.01189 1.20980 0.95299 0.94875 0.95168 1.21673 0.91335 1.07247 0.99565 1.96796 1.04877 1.97355 1.96488 1.20965 0.91071 0.97146 0.98271 1.19648 0.94335 1.03336 0.96004 1.25229 0.98577 0.96325 0.99083 1.86690 1.73117 1.38279 1.35903 0.84595 0.78791 0.76089 0.78104 1.17223 1.17412 1.16814 1.21169 0.98677 0.93477 0.98941 1.21096 0.97431 0.99844 0.92557 0.91144 0.90959 0.91145 0.91028 0.90883 0.91149 0.91149 0.90886 0.91029 0.85765 0.86029 0.89819 0.89786 0.87064 0.87004 0.83937 0.84013 0.83958 0.89968 0.78147 0.86010 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.96 8.65 101.05 0.87 1.84 16 2 Si 1.06 -3.46 12.32 -169.99 -2.09 -5.56 16 3 C -0.45 1.13 8.53 101.05 0.86 1.99 16 4 C -0.45 1.13 8.53 101.05 0.86 1.99 16 5 C -0.36 0.39 4.59 -39.58 -0.18 0.21 16 6 C -0.09 0.06 9.29 -39.58 -0.37 -0.31 16 7 C -0.10 0.00 9.70 -39.58 -0.38 -0.38 16 8 C -0.09 -0.03 5.52 -104.62 -0.58 -0.61 16 9 C 0.11 0.01 5.59 36.01 0.20 0.21 16 10 O -0.35 -0.11 10.20 -39.27 -0.40 -0.52 16 11 C 0.46 0.27 8.03 36.01 0.29 0.56 16 12 O -0.48 -1.92 16.25 -25.48 -0.41 -2.33 16 13 C 0.07 -0.15 5.33 36.01 0.19 0.04 16 14 O -0.29 -0.07 8.57 -39.42 -0.34 -0.41 16 15 C 0.16 0.03 6.62 -39.22 -0.26 -0.23 16 16 C -0.20 0.29 9.04 -39.44 -0.36 -0.07 16 17 C -0.04 0.03 9.78 -39.58 -0.39 -0.36 16 18 C -0.12 -0.11 6.22 -39.51 -0.25 -0.35 16 19 Br -0.04 -0.04 33.70 -68.01 -2.29 -2.34 16 20 C -0.06 -0.07 8.40 -39.58 -0.33 -0.41 16 21 C -0.13 -0.17 5.28 -104.48 -0.55 -0.72 16 22 C -0.08 -0.13 2.33 36.00 0.08 -0.04 16 23 O -0.53 -1.38 12.65 -35.23 -0.45 -1.83 16 24 Si 1.01 1.17 25.75 -169.99 -4.38 -3.21 16 25 H -0.25 -0.38 6.73 56.52 0.38 0.00 16 26 H -0.25 -0.55 7.11 56.52 0.40 -0.15 16 27 H -0.24 -0.14 7.11 56.52 0.40 0.26 16 28 C -0.10 0.00 9.70 -39.58 -0.38 -0.38 16 29 C -0.09 0.06 9.29 -39.58 -0.37 -0.31 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 34 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 35 H 0.07 -0.19 7.69 -51.93 -0.40 -0.59 16 36 H 0.07 -0.19 7.69 -51.93 -0.40 -0.59 16 37 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 38 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 39 H 0.12 -0.31 7.43 -52.49 -0.39 -0.70 16 40 H 0.12 -0.17 8.06 -52.48 -0.42 -0.59 16 41 H 0.08 -0.02 8.08 -51.92 -0.42 -0.44 16 42 H 0.08 -0.02 8.07 -51.93 -0.42 -0.44 16 43 H 0.11 -0.51 7.65 -51.93 -0.40 -0.90 16 44 H 0.11 -0.52 7.67 -51.93 -0.40 -0.92 16 45 H 0.14 -0.62 6.30 -52.48 -0.33 -0.95 16 46 H 0.14 -0.35 8.06 -52.48 -0.42 -0.77 16 47 H 0.14 0.11 4.89 -52.48 -0.26 -0.15 16 48 H 0.08 0.08 7.83 -51.93 -0.41 -0.32 16 49 H 0.37 0.29 8.60 45.56 0.39 0.68 16 50 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 51 H 0.12 -0.31 7.43 -52.49 -0.39 -0.70 16 LS Contribution 450.06 15.07 6.78 6.78 Total: 0.00 -7.19 450.06 -11.40 -18.59 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: -6.79 Total: -11.88 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.03 Total: 2.69 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -1.60 Total: -5.09 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: -6.47 Total: -8.76 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 6.78 Total: 6.78 kcal Total: -7.19 -11.40 -18.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_771800_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.299 kcal (2) G-P(sol) polarization free energy of solvation -7.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds