Wall clock time and date at job start Sat Mar 6 2021 08:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86296 * 109.46865 * 2 1 4 4 C 1.86296 * 109.47243 * 239.99604 * 2 1 3 5 5 C 1.86807 * 109.46908 * 119.99796 * 2 1 3 6 6 C 1.38233 * 119.99875 * 90.00184 * 5 2 1 7 7 C 1.38237 * 119.99651 * 180.02562 * 6 5 2 8 8 C 1.38229 * 120.00189 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00313 * 179.97438 * 8 7 6 10 10 O 1.45196 * 109.47396 * 89.99381 * 9 8 7 11 11 C 1.34234 * 116.99938 * 180.02562 * 10 9 8 12 12 O 1.20826 * 119.99712 * 359.72483 * 11 10 9 13 13 C 1.50700 * 120.00068 * 180.02562 * 11 10 9 14 14 O 1.42898 * 109.46900 * 179.97438 * 13 11 10 15 15 C 1.35914 * 116.99629 * 180.02562 * 14 13 11 16 16 C 1.38703 * 120.04832 * 359.72340 * 15 14 13 17 17 C 1.38163 * 119.95491 * 179.70239 * 16 15 14 18 18 C 1.38320 * 120.04468 * 0.57150 * 17 16 15 19 19 Br 1.89106 * 119.95204 * 179.74249 * 18 17 16 20 20 C 1.38357 * 120.09201 * 359.73049 * 18 17 16 21 21 C 1.38119 * 120.04831 * 359.97034 * 20 18 17 22 22 C 1.50696 * 120.02762 * 180.02562 * 21 20 18 23 23 O 1.42902 * 109.47245 * 105.01934 * 22 21 20 24 24 Si 1.86302 * 109.47009 * 345.02080 * 22 21 20 25 25 H 1.48504 * 109.46853 * 60.00039 * 24 22 21 26 26 H 1.48501 * 109.47102 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47414 * 300.00180 * 24 22 21 28 28 C 1.38240 * 120.00082 * 0.25104 * 8 7 6 29 29 C 1.38234 * 119.99784 * 359.49714 * 28 8 7 30 30 H 1.08996 * 109.47396 * 300.00041 * 1 2 3 31 31 H 1.08995 * 109.47314 * 60.00163 * 1 2 3 32 32 H 1.09002 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46910 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47277 * 299.99535 * 3 2 1 35 35 H 1.09004 * 109.47455 * 59.99806 * 3 2 1 36 36 H 1.08997 * 109.47551 * 300.00194 * 4 2 1 37 37 H 1.08996 * 109.47039 * 60.00379 * 4 2 1 38 38 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 39 39 H 1.07997 * 120.00018 * 0.02562 * 6 5 2 40 40 H 1.08003 * 119.99717 * 179.97438 * 7 6 5 41 41 H 1.09012 * 109.46606 * 329.99364 * 9 8 7 42 42 H 1.08996 * 109.47079 * 209.99942 * 9 8 7 43 43 H 1.08992 * 109.47012 * 300.00044 * 13 11 10 44 44 H 1.08999 * 109.46550 * 59.99877 * 13 11 10 45 45 H 1.08003 * 120.02502 * 359.97438 * 16 15 14 46 46 H 1.08008 * 119.97700 * 180.29737 * 17 16 15 47 47 H 1.08007 * 119.98087 * 179.97438 * 20 18 17 48 48 H 1.08998 * 109.47403 * 225.02473 * 22 21 20 49 49 H 0.96697 * 113.99470 * 60.00376 * 23 22 21 50 50 H 1.08001 * 120.00133 * 179.72520 * 28 8 7 51 51 H 1.07995 * 120.00144 * 180.22961 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4055 -2.1840 3.7832 9 6 3.9067 -2.8945 5.0141 10 8 5.3587 -2.8947 5.0154 11 6 5.9671 -3.4933 6.0515 12 8 5.3081 -3.9959 6.9307 13 6 7.4719 -3.5324 6.1215 14 8 7.8758 -4.2178 7.3086 15 6 9.2119 -4.3413 7.5254 16 6 10.1150 -3.8187 6.6116 17 6 11.4727 -3.9399 6.8370 18 6 11.9316 -4.5922 7.9671 19 35 13.7905 -4.7630 8.2693 20 6 11.0324 -5.1197 8.8768 21 6 9.6743 -4.9953 8.6584 22 6 8.6954 -5.5695 9.6498 23 8 8.1190 -4.5112 10.4177 24 14 9.5826 -6.7494 10.7863 25 1 10.6554 -6.0241 11.5132 26 1 8.6180 -7.3148 11.7637 27 1 10.1816 -7.8492 9.9884 28 6 3.1697 -0.8224 3.8191 29 6 2.7144 -0.1698 2.6887 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1206 2.2702 -0.8900 35 1 2.1205 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3645 -2.4110 38 1 3.5740 -0.8779 -1.5212 39 1 2.5364 -2.7985 0.5824 40 1 3.3559 -3.9595 2.5934 41 1 3.5432 -3.9223 5.0137 42 1 3.5426 -2.3808 5.9037 43 1 7.8627 -4.0554 5.2488 44 1 7.8613 -2.5145 6.1397 45 1 9.7572 -3.3135 5.7266 46 1 12.1763 -3.5289 6.1280 47 1 11.3927 -5.6291 9.7584 48 1 7.9080 -6.1019 9.1163 49 1 7.6401 -3.8578 9.8896 50 1 3.3446 -0.2678 4.7292 51 1 2.5337 0.8946 2.7156 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_771800_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:45:06 Heat of formation + Delta-G solvation = -131.565688 kcal Electronic energy + Delta-G solvation = -32187.235569 eV Core-core repulsion = 27608.234022 eV Total energy + Delta-G solvation = -4579.001547 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 452.066 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.07175 -41.39481 -40.02000 -38.96142 -37.64110 -37.59238 -33.36316 -33.11141 -32.72002 -31.89802 -30.80803 -29.51918 -29.33235 -28.28189 -28.26417 -27.21369 -26.88137 -24.10569 -23.50236 -22.62996 -22.34554 -22.01257 -19.76403 -18.76532 -18.40949 -18.30465 -18.16317 -17.52950 -17.01137 -16.83033 -16.67266 -16.06278 -15.91043 -15.81073 -15.64136 -15.35415 -14.78308 -14.65465 -14.37280 -14.27236 -14.19819 -14.05310 -14.01930 -13.91731 -13.77907 -13.70922 -13.38911 -13.15382 -13.10177 -13.01370 -12.95525 -12.94103 -12.72046 -12.66607 -12.29072 -12.12717 -11.94703 -11.76965 -11.76120 -11.47530 -11.45513 -11.24379 -11.09657 -10.91809 -10.78671 -10.74763 -10.22338 -9.81945 -9.71477 -9.35754 -0.08361 -0.03394 0.03608 0.50934 0.56479 0.91929 1.00085 1.11099 1.41718 1.44621 1.83904 1.88496 2.03453 2.07138 2.30059 2.32588 2.67152 2.92094 3.32186 3.40999 3.57948 3.67771 3.74280 3.79993 3.83263 3.93152 4.00623 4.01989 4.10586 4.16463 4.20197 4.27605 4.36966 4.52834 4.57376 4.69712 4.83199 4.85219 4.85526 4.89671 4.90737 4.91083 4.91520 4.95527 4.97219 5.01265 5.13360 5.14891 5.29696 5.39138 5.54900 5.58011 5.60407 5.68829 5.72115 5.95701 6.10070 6.48524 6.54791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.370 4.370 6 C -0.102 4.102 7 C -0.119 4.119 8 C -0.106 4.106 9 C 0.111 3.889 10 O -0.345 6.345 11 C 0.466 3.534 12 O -0.522 6.522 13 C 0.064 3.936 14 O -0.307 6.307 15 C 0.154 3.846 16 C -0.189 4.189 17 C -0.043 4.043 18 C -0.131 4.131 19 Br -0.049 7.049 20 C -0.068 4.068 21 C -0.146 4.146 22 C -0.085 4.085 23 O -0.549 6.549 24 Si 1.020 2.980 25 H -0.257 1.257 26 H -0.269 1.269 27 H -0.235 1.235 28 C -0.119 4.119 29 C -0.102 4.102 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.178 0.822 46 H 0.162 0.838 47 H 0.139 0.861 48 H 0.083 0.917 49 H 0.376 0.624 50 H 0.129 0.871 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 3.250 -7.812 8.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.410 4.410 6 C -0.120 4.120 7 C -0.137 4.137 8 C -0.106 4.106 9 C 0.038 3.962 10 O -0.262 6.262 11 C 0.309 3.691 12 O -0.410 6.410 13 C -0.011 4.011 14 O -0.221 6.221 15 C 0.108 3.892 16 C -0.208 4.208 17 C -0.062 4.062 18 C -0.210 4.210 19 Br 0.036 6.964 20 C -0.088 4.088 21 C -0.148 4.148 22 C -0.194 4.194 23 O -0.356 6.356 24 Si 0.840 3.160 25 H -0.181 1.181 26 H -0.194 1.194 27 H -0.158 1.158 28 C -0.137 4.137 29 C -0.120 4.120 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.195 0.805 46 H 0.179 0.821 47 H 0.157 0.843 48 H 0.101 0.899 49 H 0.225 0.775 50 H 0.147 0.853 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.257 2.041 -6.242 6.572 hybrid contribution -1.049 0.516 -0.420 1.242 sum -0.792 2.557 -6.662 7.180 Atomic orbital electron populations 1.26311 1.21783 1.04441 1.04550 0.77165 0.65044 0.64678 0.61672 1.26280 1.06488 1.19332 1.04868 1.26277 1.06490 1.08484 1.15709 1.28056 1.02080 0.99651 1.11186 1.21400 0.97230 0.95163 0.98220 1.21383 0.99003 1.00507 0.92771 1.19542 1.02023 0.94592 0.94461 1.21947 0.75516 1.01582 0.97113 1.86513 1.23967 1.70743 1.45026 1.23407 0.91818 0.74664 0.79220 1.90751 1.67552 1.43411 1.39269 1.22275 0.87429 1.02274 0.89151 1.86021 1.20477 1.73200 1.42397 1.18829 0.81894 0.94767 0.93703 1.21633 0.92583 1.05029 1.01600 1.21272 0.96112 0.94092 0.94758 1.21783 0.90836 1.08085 1.00333 1.96779 1.05537 1.97439 1.96616 1.20989 0.91343 0.97848 0.98612 1.19628 0.94154 1.04366 0.96689 1.25232 0.98747 0.96126 0.99248 1.86659 1.73385 1.38773 1.36750 0.84408 0.77925 0.76088 0.77542 1.18094 1.19397 1.15794 1.21386 0.98999 0.93592 0.99678 1.21400 0.97252 1.00837 0.92525 0.91438 0.90720 0.91433 0.91179 0.90714 0.90909 0.90899 0.90717 0.91177 0.84137 0.85284 0.89971 0.89924 0.84101 0.83971 0.80521 0.82082 0.84307 0.89893 0.77502 0.85269 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.20 8.65 113.37 0.98 3.19 16 2 Si 1.13 -8.25 12.32 68.60 0.85 -7.40 16 3 C -0.46 2.72 8.53 113.37 0.97 3.68 16 4 C -0.46 2.73 8.53 113.37 0.97 3.69 16 5 C -0.37 0.97 4.59 22.27 0.10 1.07 16 6 C -0.10 0.16 9.29 22.27 0.21 0.37 16 7 C -0.12 -0.03 9.70 22.27 0.22 0.19 16 8 C -0.11 -0.12 5.52 -19.87 -0.11 -0.23 16 9 C 0.11 0.11 5.59 71.24 0.40 0.51 16 10 O -0.35 -0.21 10.20 -51.46 -0.53 -0.73 16 11 C 0.47 0.50 8.03 71.24 0.57 1.07 16 12 O -0.52 -4.72 16.25 28.39 0.46 -4.26 16 13 C 0.06 -0.40 5.33 71.24 0.38 -0.02 16 14 O -0.31 0.05 8.57 -73.50 -0.63 -0.58 16 15 C 0.15 -0.07 6.62 22.50 0.15 0.08 16 16 C -0.19 0.97 9.04 22.36 0.20 1.17 16 17 C -0.04 0.13 9.78 22.27 0.22 0.35 16 18 C -0.13 -0.20 6.22 22.32 0.14 -0.06 16 19 Br -0.05 -0.11 33.70 -20.37 -0.69 -0.80 16 20 C -0.07 -0.21 8.40 22.27 0.19 -0.03 16 21 C -0.15 -0.42 5.28 -19.77 -0.10 -0.53 16 22 C -0.09 -0.35 2.33 71.23 0.17 -0.19 16 23 O -0.55 -3.58 12.65 -148.98 -1.89 -5.46 16 24 Si 1.02 3.76 25.75 68.60 1.77 5.53 16 25 H -0.26 -1.21 6.73 99.48 0.67 -0.54 16 26 H -0.27 -1.71 7.11 99.48 0.71 -1.01 16 27 H -0.24 -0.43 7.11 99.48 0.71 0.28 16 28 C -0.12 -0.03 9.70 22.27 0.22 0.19 16 29 C -0.10 0.16 9.29 22.27 0.21 0.36 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 34 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 35 H 0.07 -0.45 7.69 -2.38 -0.02 -0.47 16 36 H 0.07 -0.45 7.69 -2.39 -0.02 -0.47 16 37 H 0.07 -0.45 7.96 -2.39 -0.02 -0.46 16 38 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 39 H 0.14 -0.80 7.43 -2.91 -0.02 -0.82 16 40 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 41 H 0.08 0.07 8.08 -2.38 -0.02 0.05 16 42 H 0.08 0.07 8.07 -2.39 -0.02 0.05 16 43 H 0.14 -1.70 7.65 -2.39 -0.02 -1.72 16 44 H 0.14 -1.74 7.67 -2.39 -0.02 -1.76 16 45 H 0.18 -2.23 6.30 -2.91 -0.02 -2.25 16 46 H 0.16 -1.16 8.06 -2.91 -0.02 -1.18 16 47 H 0.14 0.39 4.89 -2.91 -0.01 0.37 16 48 H 0.08 0.28 7.83 -2.39 -0.02 0.26 16 49 H 0.38 1.09 8.60 -74.06 -0.64 0.45 16 50 H 0.13 -0.30 8.06 -2.91 -0.02 -0.33 16 51 H 0.14 -0.80 7.43 -2.91 -0.02 -0.82 16 Total: 0.00 -18.20 450.06 6.44 -11.76 By element: Atomic # 1 Polarization: -13.96 SS G_CDS: 1.04 Total: -12.92 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.06 Total: 14.87 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -2.58 Total: -11.04 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: 2.61 Total: -1.87 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -0.69 Total: -0.80 kcal Total: -18.20 6.44 -11.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_771800_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.810 kcal (2) G-P(sol) polarization free energy of solvation -18.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds