Wall clock time and date at job start Sat Mar 6 2021 08:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47286 * 2 1 4 4 C 1.50707 * 109.46603 * 240.00045 * 2 1 3 5 5 C 1.38139 * 126.54722 * 284.99872 * 4 2 1 6 6 C 1.40912 * 136.19574 * 0.02562 * 5 4 2 7 7 C 1.35361 * 119.76035 * 180.02562 * 6 5 4 8 8 C 1.41043 * 121.52106 * 359.97438 * 7 6 5 9 9 C 1.47523 * 119.29566 * 180.02562 * 8 7 6 10 10 O 1.21502 * 119.99642 * 180.02562 * 9 8 7 11 11 O 1.34750 * 119.99888 * 0.02562 * 9 8 7 12 12 C 1.45204 * 116.99658 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46617 * 180.02562 * 12 11 9 14 14 H 1.09006 * 112.85187 * 316.19400 * 13 12 11 15 15 C 1.53779 * 113.69268 * 87.46440 * 13 12 11 16 16 C 1.53784 * 87.08045 * 139.99100 * 15 13 12 17 17 H 1.08994 * 113.61477 * 89.11454 * 16 15 13 18 18 O 1.42895 * 113.61275 * 220.02177 * 16 15 13 19 19 C 1.53779 * 113.61005 * 185.00202 * 13 12 11 20 20 C 1.38214 * 121.40914 * 0.28089 * 8 7 6 21 21 C 1.40599 * 119.34595 * 359.45852 * 20 8 7 22 22 N 1.32029 * 135.61969 * 180.16306 * 21 20 8 23 23 N 1.28492 * 110.77398 * 180.32518 * 22 21 20 24 24 H 0.96698 * 113.99992 * 59.99655 * 1 2 3 25 25 H 1.09004 * 109.47418 * 120.00549 * 2 1 3 26 26 H 1.48502 * 110.00001 * 298.68464 * 3 2 1 27 27 H 1.48502 * 109.99855 * 59.99939 * 3 2 1 28 28 H 1.07996 * 120.12317 * 0.02562 * 6 5 4 29 29 H 1.07997 * 119.24171 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47289 * 60.00176 * 12 11 9 31 31 H 1.08996 * 109.46876 * 299.99704 * 12 11 9 32 32 H 1.09002 * 113.61557 * 25.44212 * 15 13 12 33 33 H 1.09004 * 113.61501 * 254.53633 * 15 13 12 34 34 H 0.96703 * 114.00032 * 277.49449 * 18 16 15 35 35 H 1.08997 * 113.61646 * 105.38661 * 19 13 12 36 36 H 1.09000 * 113.61527 * 334.47932 * 19 13 12 37 37 H 1.08000 * 120.32800 * 179.72374 * 20 8 7 38 38 H 0.96998 * 123.95743 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2306 5 6 1.9346 -2.0744 -1.4492 6 6 1.5338 -3.2201 -0.7333 7 6 1.6958 -4.4465 -1.2828 8 6 2.2597 -4.6114 -2.5650 9 6 2.4129 -5.9709 -3.1168 10 8 2.8975 -6.1277 -4.2199 11 8 2.0153 -7.0388 -2.3975 12 6 2.1958 -8.3459 -3.0034 13 6 1.6897 -9.4263 -2.0455 14 1 2.0022 -9.2583 -1.0148 15 6 0.1891 -9.7288 -2.1926 16 6 0.5499 -11.2118 -2.0042 17 1 0.5509 -11.5319 -0.9623 18 8 -0.1854 -12.0924 -2.8561 19 6 1.9470 -10.8589 -2.5416 20 6 2.6766 -3.5268 -3.3134 21 6 2.5256 -2.2302 -2.7911 22 7 2.7972 -1.0073 -3.2082 23 7 2.4601 -0.1387 -2.3234 24 1 -0.3933 0.4417 -0.7650 25 1 1.7924 -0.5139 0.8899 26 1 1.5879 2.4586 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 1.0990 -3.1201 0.2502 29 1 1.3860 -5.3189 -0.7266 30 1 3.2540 -8.5084 -3.2084 31 1 1.6333 -8.3950 -3.9357 32 1 -0.2079 -9.4982 -3.1812 33 1 -0.4196 -9.3216 -1.3853 34 1 -1.0649 -12.3181 -2.5235 35 1 2.7573 -11.3641 -2.0160 36 1 2.0305 -10.9373 -3.6255 37 1 3.1102 -3.6735 -4.2916 38 1 2.5747 0.8183 -2.4324 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_7964246_11354868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:48:26 Heat of formation + Delta-G solvation = -37.458691 kcal Electronic energy + Delta-G solvation = -23880.075258 eV Core-core repulsion = 20078.091159 eV Total energy + Delta-G solvation = -3801.984099 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.82904 -41.45718 -40.27617 -38.51614 -38.25280 -37.30852 -35.95941 -33.55012 -32.42923 -31.00680 -29.66928 -27.17470 -26.79506 -26.25582 -23.95962 -23.47524 -22.16370 -21.28017 -20.64265 -19.53168 -19.09536 -18.63556 -18.21667 -17.78970 -17.41714 -17.33931 -17.10390 -16.41976 -16.03995 -15.90922 -15.49492 -15.37591 -15.03660 -14.93267 -14.43636 -14.10875 -13.74599 -13.52119 -13.49494 -13.37156 -12.99472 -12.80469 -12.73933 -12.40925 -12.28343 -12.11282 -11.65751 -11.54260 -11.44652 -11.35492 -11.21176 -10.93289 -10.77783 -9.97750 -8.86917 -5.35110 -0.70971 0.16617 0.79789 1.12014 1.28784 1.40258 1.60147 1.64409 1.73572 2.75457 2.95441 3.07564 3.16993 3.21174 3.40902 3.50258 3.62691 3.80110 3.87255 3.89127 3.96700 4.11097 4.18537 4.24158 4.27264 4.37089 4.42593 4.52222 4.64466 4.73418 4.73852 4.89771 4.92551 5.06773 5.14911 5.25952 5.31322 5.39490 5.50266 5.65614 5.71362 6.05166 6.67853 6.69392 6.82066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.518 6.518 2 C -0.039 4.039 3 Si 0.675 3.325 4 C -0.014 4.014 5 C -0.120 4.120 6 C -0.062 4.062 7 C -0.097 4.097 8 C -0.101 4.101 9 C 0.511 3.489 10 O -0.504 6.504 11 O -0.348 6.348 12 C 0.080 3.920 13 C -0.110 4.110 14 H 0.107 0.893 15 C -0.164 4.164 16 C 0.076 3.924 17 H 0.085 0.915 18 O -0.560 6.560 19 C -0.120 4.120 20 C 0.007 3.993 21 C 0.045 3.955 22 N -0.268 5.268 23 N -0.328 5.328 24 H 0.378 0.622 25 H 0.137 0.863 26 H -0.252 1.252 27 H -0.237 1.237 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.380 0.620 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.148 0.852 38 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 2.466 4.987 5.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.323 6.323 2 C -0.151 4.151 3 Si 0.573 3.427 4 C -0.148 4.148 5 C -0.128 4.128 6 C -0.082 4.082 7 C -0.116 4.116 8 C -0.106 4.106 9 C 0.356 3.644 10 O -0.393 6.393 11 O -0.265 6.265 12 C 0.006 3.994 13 C -0.129 4.129 14 H 0.126 0.874 15 C -0.202 4.202 16 C 0.017 3.983 17 H 0.103 0.897 18 O -0.366 6.366 19 C -0.158 4.158 20 C -0.014 4.014 21 C -0.101 4.101 22 N -0.105 5.105 23 N -0.039 5.039 24 H 0.226 0.774 25 H 0.155 0.845 26 H -0.177 1.177 27 H -0.160 1.160 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.228 0.772 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.166 0.834 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 0.851 3.539 3.914 5.345 hybrid contribution -1.752 -0.115 0.247 1.773 sum -0.901 3.423 4.161 5.463 Atomic orbital electron populations 1.86699 1.16676 1.79827 1.49093 1.24511 0.84280 1.10673 0.95614 0.95298 0.91242 0.73651 0.82469 1.21766 1.06600 0.93342 0.93057 1.19376 1.05019 0.92236 0.96201 1.20051 0.98909 0.89678 0.99532 1.20738 0.98883 0.98097 0.93881 1.18711 1.06137 0.89233 0.96527 1.21033 0.74725 0.85573 0.83062 1.90875 1.41196 1.86846 1.20401 1.86526 1.76341 1.15617 1.48011 1.23105 1.02085 0.78076 0.96102 1.22368 0.97116 0.92857 1.00537 0.87445 1.23796 0.96019 0.96959 1.03433 1.23291 0.92825 0.88269 0.93928 0.89705 1.86531 1.32589 1.67705 1.49735 1.23074 0.96250 0.93613 1.02849 1.20249 0.94750 0.87085 0.99283 1.20349 1.03461 0.91944 0.94312 1.73654 1.22581 0.98420 1.15822 1.43520 1.39878 1.10453 1.10081 0.77395 0.84507 1.17707 1.16012 0.84779 0.84215 0.90589 0.90673 0.89034 0.90665 0.77216 0.90031 0.88703 0.83418 0.70735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.65 12.88 -35.23 -0.45 0.20 16 2 C -0.04 0.11 3.03 36.01 0.11 0.22 16 3 Si 0.67 -2.79 31.16 -169.99 -5.30 -8.09 16 4 C -0.01 0.01 6.19 -81.59 -0.51 -0.49 16 5 C -0.12 -0.16 6.38 -105.17 -0.67 -0.83 16 6 C -0.06 -0.03 10.05 -39.60 -0.40 -0.42 16 7 C -0.10 -0.08 9.47 -39.55 -0.37 -0.45 16 8 C -0.10 -0.25 5.86 -105.06 -0.62 -0.86 16 9 C 0.51 1.82 7.88 34.52 0.27 2.10 16 10 O -0.50 -3.08 16.04 -19.27 -0.31 -3.39 16 11 O -0.35 -0.73 9.37 -40.63 -0.38 -1.11 16 12 C 0.08 0.07 5.32 37.16 0.20 0.27 16 13 C -0.11 0.09 4.02 -89.81 -0.36 -0.27 16 14 H 0.11 -0.17 8.14 -51.93 -0.42 -0.59 16 15 C -0.16 0.13 7.47 -25.92 -0.19 -0.07 16 16 C 0.08 -0.05 5.21 -25.91 -0.14 -0.19 16 17 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 18 O -0.56 -0.42 13.67 -35.23 -0.48 -0.90 16 19 C -0.12 0.08 7.47 -25.92 -0.19 -0.12 16 20 C 0.01 0.02 9.64 -38.70 -0.37 -0.35 16 21 C 0.05 0.13 7.53 -83.14 -0.63 -0.50 16 22 N -0.27 -0.59 12.20 33.21 0.41 -0.18 16 23 N -0.33 0.32 6.26 33.87 0.21 0.53 16 24 H 0.38 -1.51 8.70 45.56 0.40 -1.12 16 25 H 0.14 -0.52 7.96 -51.93 -0.41 -0.93 16 26 H -0.25 0.77 7.07 56.52 0.40 1.17 16 27 H -0.24 0.18 7.11 56.52 0.40 0.59 16 28 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 29 H 0.14 -0.11 7.51 -52.49 -0.39 -0.50 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.07 0.10 7.84 -51.93 -0.41 -0.31 16 32 H 0.09 0.02 7.90 -51.93 -0.41 -0.39 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 34 H 0.38 -1.25 9.12 45.56 0.42 -0.83 16 35 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 36 H 0.09 0.02 8.10 -51.93 -0.42 -0.40 16 37 H 0.15 0.39 7.57 -52.49 -0.40 0.00 16 38 H 0.45 -1.80 6.85 -190.43 -1.31 -3.10 16 LS Contribution 331.59 15.07 5.00 5.00 Total: 0.00 -9.16 331.59 -9.85 -19.00 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: -4.67 Total: -9.09 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.87 Total: -1.97 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: 0.62 Total: 0.35 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -1.63 Total: -5.20 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: -5.30 Total: -8.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -9.16 -9.85 -19.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_11354868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.455 kcal (2) G-P(sol) polarization free energy of solvation -9.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds