Wall clock time and date at job start Sat Mar 6 2021 08:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47286 * 2 1 4 4 C 1.50707 * 109.46603 * 240.00045 * 2 1 3 5 5 C 1.38139 * 126.54722 * 284.99872 * 4 2 1 6 6 C 1.40912 * 136.19574 * 0.02562 * 5 4 2 7 7 C 1.35361 * 119.76035 * 180.02562 * 6 5 4 8 8 C 1.41043 * 121.52106 * 359.97438 * 7 6 5 9 9 C 1.47523 * 119.29566 * 180.02562 * 8 7 6 10 10 O 1.21502 * 119.99642 * 180.02562 * 9 8 7 11 11 O 1.34750 * 119.99888 * 0.02562 * 9 8 7 12 12 C 1.45204 * 116.99658 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46617 * 180.02562 * 12 11 9 14 14 H 1.09006 * 112.85187 * 316.19400 * 13 12 11 15 15 C 1.53779 * 113.69268 * 87.46440 * 13 12 11 16 16 C 1.53784 * 87.08045 * 139.99100 * 15 13 12 17 17 H 1.08994 * 113.61477 * 89.11454 * 16 15 13 18 18 O 1.42895 * 113.61275 * 220.02177 * 16 15 13 19 19 C 1.53779 * 113.61005 * 185.00202 * 13 12 11 20 20 C 1.38214 * 121.40914 * 0.28089 * 8 7 6 21 21 C 1.40599 * 119.34595 * 359.45852 * 20 8 7 22 22 N 1.32029 * 135.61969 * 180.16306 * 21 20 8 23 23 N 1.28492 * 110.77398 * 180.32518 * 22 21 20 24 24 H 0.96698 * 113.99992 * 59.99655 * 1 2 3 25 25 H 1.09004 * 109.47418 * 120.00549 * 2 1 3 26 26 H 1.48502 * 110.00001 * 298.68464 * 3 2 1 27 27 H 1.48502 * 109.99855 * 59.99939 * 3 2 1 28 28 H 1.07996 * 120.12317 * 0.02562 * 6 5 4 29 29 H 1.07997 * 119.24171 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47289 * 60.00176 * 12 11 9 31 31 H 1.08996 * 109.46876 * 299.99704 * 12 11 9 32 32 H 1.09002 * 113.61557 * 25.44212 * 15 13 12 33 33 H 1.09004 * 113.61501 * 254.53633 * 15 13 12 34 34 H 0.96703 * 114.00032 * 277.49449 * 18 16 15 35 35 H 1.08997 * 113.61646 * 105.38661 * 19 13 12 36 36 H 1.09000 * 113.61527 * 334.47932 * 19 13 12 37 37 H 1.08000 * 120.32800 * 179.72374 * 20 8 7 38 38 H 0.96998 * 123.95743 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2306 5 6 1.9346 -2.0744 -1.4492 6 6 1.5338 -3.2201 -0.7333 7 6 1.6958 -4.4465 -1.2828 8 6 2.2597 -4.6114 -2.5650 9 6 2.4129 -5.9709 -3.1168 10 8 2.8975 -6.1277 -4.2199 11 8 2.0153 -7.0388 -2.3975 12 6 2.1958 -8.3459 -3.0034 13 6 1.6897 -9.4263 -2.0455 14 1 2.0022 -9.2583 -1.0148 15 6 0.1891 -9.7288 -2.1926 16 6 0.5499 -11.2118 -2.0042 17 1 0.5509 -11.5319 -0.9623 18 8 -0.1854 -12.0924 -2.8561 19 6 1.9470 -10.8589 -2.5416 20 6 2.6766 -3.5268 -3.3134 21 6 2.5256 -2.2302 -2.7911 22 7 2.7972 -1.0073 -3.2082 23 7 2.4601 -0.1387 -2.3234 24 1 -0.3933 0.4417 -0.7650 25 1 1.7924 -0.5139 0.8899 26 1 1.5879 2.4586 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 1.0990 -3.1201 0.2502 29 1 1.3860 -5.3189 -0.7266 30 1 3.2540 -8.5084 -3.2084 31 1 1.6333 -8.3950 -3.9357 32 1 -0.2079 -9.4982 -3.1812 33 1 -0.4196 -9.3216 -1.3853 34 1 -1.0649 -12.3181 -2.5235 35 1 2.7573 -11.3641 -2.0160 36 1 2.0305 -10.9373 -3.6255 37 1 3.1102 -3.6735 -4.2916 38 1 2.5747 0.8183 -2.4324 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_11354868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:48:25 Heat of formation + Delta-G solvation = -39.121364 kcal Electronic energy + Delta-G solvation = -23880.147357 eV Core-core repulsion = 20078.091159 eV Total energy + Delta-G solvation = -3802.056198 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.85382 -41.67586 -40.26718 -38.57330 -38.12083 -37.54731 -35.97261 -33.57600 -32.51044 -31.03080 -29.73835 -27.13114 -26.73599 -26.30161 -24.00397 -23.48440 -22.32797 -21.30802 -20.60094 -19.55415 -19.14638 -18.65182 -18.17178 -17.92469 -17.56641 -17.39412 -17.09470 -16.36597 -16.01914 -15.78560 -15.54450 -15.41421 -15.11206 -14.96793 -14.41870 -14.10102 -13.79520 -13.57672 -13.46276 -13.31969 -13.09504 -12.81461 -12.68533 -12.39707 -12.16369 -12.14097 -11.80515 -11.63787 -11.54961 -11.40880 -11.19736 -10.77645 -10.72633 -10.05558 -8.92199 -5.02279 -0.81589 0.10207 1.06165 1.19389 1.36032 1.42863 1.45642 1.66134 1.92315 2.65255 2.99593 3.12529 3.27096 3.35106 3.42567 3.53135 3.61058 3.80298 3.86130 3.96268 3.97620 4.07002 4.19015 4.21952 4.31496 4.38425 4.46484 4.49600 4.68066 4.76726 4.81008 4.81656 4.98937 5.06544 5.13206 5.20596 5.22358 5.38170 5.41870 5.66849 5.78062 6.34886 6.56742 6.65904 6.89661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.047 4.047 3 Si 0.757 3.243 4 C 0.009 3.991 5 C -0.141 4.141 6 C -0.052 4.052 7 C -0.104 4.104 8 C -0.103 4.103 9 C 0.512 3.488 10 O -0.538 6.538 11 O -0.342 6.342 12 C 0.076 3.924 13 C -0.101 4.101 14 H 0.122 0.878 15 C -0.163 4.163 16 C 0.076 3.924 17 H 0.105 0.895 18 O -0.584 6.584 19 C -0.125 4.125 20 C -0.010 4.010 21 C 0.026 3.974 22 N -0.295 5.295 23 N -0.315 5.315 24 H 0.389 0.611 25 H 0.152 0.848 26 H -0.263 1.263 27 H -0.282 1.282 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.137 0.863 38 H 0.459 0.541 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 3.005 6.817 7.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.157 4.157 3 Si 0.658 3.342 4 C -0.127 4.127 5 C -0.149 4.149 6 C -0.072 4.072 7 C -0.123 4.123 8 C -0.109 4.109 9 C 0.359 3.641 10 O -0.429 6.429 11 O -0.258 6.258 12 C 0.002 3.998 13 C -0.120 4.120 14 H 0.140 0.860 15 C -0.201 4.201 16 C 0.017 3.983 17 H 0.123 0.877 18 O -0.392 6.392 19 C -0.163 4.163 20 C -0.032 4.032 21 C -0.119 4.119 22 N -0.133 5.133 23 N -0.028 5.028 24 H 0.238 0.762 25 H 0.169 0.831 26 H -0.189 1.189 27 H -0.208 1.208 28 H 0.175 0.825 29 H 0.174 0.826 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.246 0.754 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.155 0.845 38 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 0.458 4.064 5.732 7.041 hybrid contribution -1.683 -0.223 -0.268 1.718 sum -1.225 3.841 5.464 6.790 Atomic orbital electron populations 1.86675 1.17305 1.80316 1.49895 1.24875 0.83833 1.11941 0.95033 0.94292 0.89894 0.70727 0.79245 1.22066 1.04731 0.92712 0.93173 1.19698 1.05780 0.93536 0.95885 1.20324 0.97693 0.89091 1.00130 1.20874 0.99163 0.99047 0.93243 1.18763 1.06449 0.88346 0.97307 1.21314 0.73892 0.86280 0.82623 1.90852 1.42891 1.87321 1.21861 1.86526 1.75867 1.15759 1.47651 1.23241 1.02039 0.78040 0.96463 1.22355 0.97037 0.91891 1.00671 0.85980 1.23761 0.96069 0.97258 1.03024 1.23411 0.92305 0.87958 0.94632 0.87724 1.86487 1.33904 1.67998 1.50817 1.23108 0.97089 0.93870 1.02205 1.20226 0.95874 0.87780 0.99275 1.20457 1.04128 0.91969 0.95313 1.73608 1.24007 0.98690 1.16988 1.43591 1.38793 1.10909 1.09521 0.76168 0.83100 1.18902 1.20809 0.82465 0.82630 0.90736 0.91628 0.90456 0.89628 0.75442 0.88931 0.90090 0.84514 0.69157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.09 12.88 -148.98 -1.92 0.17 16 2 C -0.05 0.34 3.03 71.24 0.22 0.55 16 3 Si 0.76 -7.26 31.16 68.60 2.14 -5.13 16 4 C 0.01 -0.02 6.19 42.18 0.26 0.24 16 5 C -0.14 -0.33 6.38 -20.22 -0.13 -0.46 16 6 C -0.05 0.00 10.05 22.26 0.22 0.22 16 7 C -0.10 -0.16 9.47 22.29 0.21 0.05 16 8 C -0.10 -0.65 5.86 -20.15 -0.12 -0.77 16 9 C 0.51 4.56 7.88 70.27 0.55 5.12 16 10 O -0.54 -7.96 16.04 19.83 0.32 -7.64 16 11 O -0.34 -1.73 9.37 -56.60 -0.53 -2.26 16 12 C 0.08 0.22 5.32 71.98 0.38 0.61 16 13 C -0.10 0.17 4.02 -10.27 -0.04 0.13 16 14 H 0.12 -0.53 8.14 -2.38 -0.02 -0.55 16 15 C -0.16 0.26 7.47 31.12 0.23 0.49 16 16 C 0.08 -0.14 5.21 31.12 0.16 0.03 16 17 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 18 O -0.58 -0.91 13.67 -148.98 -2.04 -2.95 16 19 C -0.13 0.13 7.47 31.12 0.23 0.37 16 20 C -0.01 -0.08 9.64 22.84 0.22 0.14 16 21 C 0.03 0.18 7.53 42.12 0.32 0.49 16 22 N -0.30 -1.51 12.20 -48.83 -0.60 -2.10 16 23 N -0.32 0.76 6.26 -46.77 -0.29 0.47 16 24 H 0.39 -3.58 8.70 -74.06 -0.64 -4.23 16 25 H 0.15 -1.48 7.96 -2.38 -0.02 -1.50 16 26 H -0.26 2.04 7.07 99.48 0.70 2.74 16 27 H -0.28 0.49 7.11 99.48 0.71 1.19 16 28 H 0.16 -0.79 8.06 -2.91 -0.02 -0.81 16 29 H 0.16 -0.36 7.51 -2.91 -0.02 -0.38 16 30 H 0.07 0.23 8.14 -2.39 -0.02 0.22 16 31 H 0.07 0.31 7.84 -2.39 -0.02 0.29 16 32 H 0.08 0.11 7.90 -2.39 -0.02 0.09 16 33 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.40 -2.65 9.12 -74.06 -0.68 -3.32 16 35 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.08 0.14 8.10 -2.39 -0.02 0.12 16 37 H 0.14 1.20 7.57 -2.91 -0.02 1.18 16 38 H 0.46 -4.13 6.85 -219.98 -1.51 -5.64 16 Total: 0.00 -22.27 331.59 -1.85 -24.12 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: -1.66 Total: -11.88 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 2.72 Total: 7.20 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -0.89 Total: -1.64 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -4.17 Total: -12.68 kcal Atomic # 14 Polarization: -7.26 SS G_CDS: 2.14 Total: -5.13 kcal Total: -22.27 -1.85 -24.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_11354868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.002 kcal (2) G-P(sol) polarization free energy of solvation -22.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds