Wall clock time and date at job start Sat Mar 6 2021 09:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86303 * 109.46985 * 2 1 4 4 C 1.50704 * 109.47174 * 240.00519 * 2 1 3 5 5 C 1.38145 * 126.53840 * 284.99941 * 4 2 1 6 6 C 1.40913 * 136.20707 * 0.02562 * 5 4 2 7 7 C 1.35350 * 119.76381 * 179.97438 * 6 5 4 8 8 C 1.41052 * 121.52367 * 0.02562 * 7 6 5 9 9 C 1.47516 * 119.29594 * 180.27829 * 8 7 6 10 10 O 1.21504 * 120.00196 * 179.72332 * 9 8 7 11 11 O 1.34755 * 120.00169 * 359.72485 * 9 8 7 12 12 C 1.45201 * 116.99952 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46751 * 179.97438 * 12 11 9 14 14 O 1.20764 * 119.99941 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00045 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.46668 * 314.06347 * 15 13 12 17 17 C 1.53001 * 109.47241 * 74.06272 * 15 13 12 18 18 C 1.53001 * 109.46677 * 60.00251 * 17 15 13 19 19 C 1.53000 * 109.46995 * 60.00287 * 18 17 15 20 20 H 1.08994 * 109.47698 * 60.00032 * 19 18 17 21 21 C 1.53009 * 109.46917 * 179.97438 * 19 18 17 22 22 F 1.39893 * 109.46947 * 179.97438 * 21 19 18 23 23 F 1.39900 * 109.46674 * 299.99905 * 21 19 18 24 24 F 1.39904 * 109.47059 * 59.99476 * 21 19 18 25 25 C 1.53001 * 109.47173 * 299.99409 * 19 18 17 26 26 C 1.52996 * 109.46976 * 60.00268 * 25 19 18 27 27 C 1.38209 * 121.40946 * 359.97438 * 8 7 6 28 28 C 1.40604 * 119.34506 * 0.02562 * 27 8 7 29 29 N 1.32026 * 135.61615 * 179.97438 * 28 27 8 30 30 N 1.28498 * 110.77337 * 180.02562 * 29 28 27 31 31 H 0.96693 * 113.99841 * 299.99787 * 1 2 3 32 32 H 1.08998 * 109.46959 * 120.00172 * 2 1 3 33 33 H 1.48493 * 110.00042 * 300.00302 * 3 2 1 34 34 H 1.48507 * 109.99754 * 61.32135 * 3 2 1 35 35 H 1.07993 * 120.11222 * 359.97438 * 6 5 4 36 36 H 1.07995 * 119.24022 * 179.97438 * 7 6 5 37 37 H 1.08988 * 109.47117 * 299.99649 * 12 11 9 38 38 H 1.08997 * 109.46897 * 60.00330 * 12 11 9 39 39 H 1.08994 * 109.46887 * 180.02562 * 17 15 13 40 40 H 1.08996 * 109.47136 * 300.00186 * 17 15 13 41 41 H 1.08994 * 109.47348 * 299.99579 * 18 17 15 42 42 H 1.09005 * 109.46728 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47063 * 300.00265 * 25 19 18 44 44 H 1.08996 * 109.47136 * 180.02562 * 25 19 18 45 45 H 1.08997 * 109.47532 * 180.02562 * 26 25 19 46 46 H 1.09002 * 109.47227 * 60.00097 * 26 25 19 47 47 H 1.07998 * 120.33218 * 179.97438 * 27 8 7 48 48 H 0.97002 * 123.95370 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2306 5 6 1.9348 -2.0744 -1.4491 6 6 1.5340 -3.2201 -0.7334 7 6 1.6950 -4.4463 -1.2834 8 6 2.2591 -4.6112 -2.5656 9 6 2.4061 -5.9702 -3.1203 10 8 2.8857 -6.1267 -4.2256 11 8 2.0085 -7.0382 -2.4010 12 6 2.1839 -8.3449 -3.0093 13 6 1.6872 -9.4092 -2.0650 14 8 1.2328 -9.0985 -0.9902 15 6 1.7585 -10.8613 -2.4616 16 1 1.3939 -10.9775 -3.4823 17 6 3.2090 -11.3415 -2.3804 18 6 3.7206 -11.1784 -0.9478 19 6 2.8544 -12.0094 0.0009 20 1 2.9060 -13.0597 -0.2859 21 6 3.3664 -11.8468 1.4335 22 9 2.5740 -12.6062 2.3009 23 9 4.6926 -12.2862 1.5073 24 9 3.3007 -10.4988 1.8020 25 6 1.4039 -11.5292 -0.0804 26 6 0.8922 -11.6923 -1.5130 27 6 2.6713 -3.5263 -3.3161 28 6 2.5262 -2.2301 -2.7909 29 7 2.7988 -1.0073 -3.2075 30 7 2.4627 -0.1387 -2.3222 31 1 -0.3933 0.4416 0.7650 32 1 1.7924 -0.5139 0.8900 33 1 1.5615 2.4679 -1.2084 34 1 1.5879 2.4585 1.2243 35 1 1.0998 -3.1201 0.2504 36 1 1.3853 -5.3187 -0.7272 37 1 1.6181 -8.3914 -3.9397 38 1 3.2409 -8.5095 -3.2181 39 1 3.2606 -12.3916 -2.6677 40 1 3.8261 -10.7495 -3.0563 41 1 3.6691 -10.1281 -0.6609 42 1 4.7541 -11.5201 -0.8900 43 1 1.3523 -10.4789 0.2066 44 1 0.7869 -12.1210 0.5958 45 1 -0.1409 -11.3498 -1.5710 46 1 0.9439 -12.7426 -1.7999 47 1 3.1013 -3.6726 -4.2959 48 1 2.5782 0.8183 -2.4309 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_7964246_12428076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:53:59 Heat of formation + Delta-G solvation = -203.220540 kcal Electronic energy + Delta-G solvation = -39571.340996 eV Core-core repulsion = 33758.967999 eV Total energy + Delta-G solvation = -5812.372997 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.133 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -50.96777 -48.46170 -48.41319 -43.77290 -41.96524 -41.18150 -38.68878 -38.27737 -38.18126 -37.25179 -33.63506 -33.60525 -32.45569 -32.12406 -31.03586 -30.19402 -27.28002 -26.89269 -26.10478 -24.07860 -23.93411 -23.72592 -22.35137 -21.98071 -21.13826 -20.31697 -19.45506 -19.13037 -19.06925 -18.98464 -18.76160 -18.57122 -18.03369 -17.76222 -17.72929 -16.92947 -16.70467 -16.63598 -16.11865 -16.02437 -15.79569 -15.47110 -15.42871 -15.32143 -15.18253 -14.96199 -14.90763 -14.80616 -14.63286 -14.59355 -14.49413 -14.24282 -14.07017 -14.05416 -13.67025 -13.64391 -13.42748 -13.35927 -13.04386 -12.97877 -12.90429 -12.81874 -12.35989 -12.33720 -12.20539 -11.86135 -11.65091 -11.54739 -11.50313 -11.45994 -11.29942 -10.78664 -10.35432 -9.94624 -8.82671 -5.35195 -0.69501 0.17918 0.72893 0.80781 1.16250 1.26508 1.31858 1.48886 1.59632 1.68929 1.85267 2.68879 2.75393 2.86687 2.95293 2.98137 3.09392 3.13511 3.40754 3.41829 3.49509 3.66557 3.70165 3.80931 3.82575 3.91708 3.92343 3.99742 4.02275 4.04379 4.07901 4.13264 4.21766 4.26274 4.29571 4.45215 4.46017 4.48265 4.63125 4.67524 4.77169 4.88309 4.91816 4.96472 4.98880 5.12335 5.26737 5.28533 5.29861 5.47410 5.69432 5.74981 6.14762 6.35046 6.69988 6.74123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.043 4.043 3 Si 0.670 3.330 4 C 0.034 3.966 5 C -0.120 4.120 6 C -0.059 4.059 7 C -0.097 4.097 8 C -0.102 4.102 9 C 0.514 3.486 10 O -0.503 6.503 11 O -0.332 6.332 12 C 0.014 3.986 13 C 0.359 3.641 14 O -0.412 6.412 15 C -0.133 4.133 16 H 0.111 0.889 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.130 4.130 20 H 0.114 0.886 21 C 0.452 3.548 22 F -0.184 7.184 23 F -0.185 7.185 24 F -0.180 7.180 25 C -0.145 4.145 26 C -0.099 4.099 27 C 0.011 3.989 28 C 0.044 3.956 29 N -0.266 5.266 30 N -0.325 5.325 31 H 0.387 0.613 32 H 0.098 0.902 33 H -0.247 1.247 34 H -0.241 1.241 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.149 0.851 48 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 1.150 0.205 1.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.154 4.154 3 Si 0.569 3.431 4 C -0.100 4.100 5 C -0.128 4.128 6 C -0.079 4.079 7 C -0.117 4.117 8 C -0.107 4.107 9 C 0.359 3.641 10 O -0.392 6.392 11 O -0.248 6.248 12 C -0.061 4.061 13 C 0.232 3.768 14 O -0.283 6.283 15 C -0.152 4.152 16 H 0.129 0.871 17 C -0.143 4.143 18 C -0.166 4.166 19 C -0.149 4.149 20 H 0.132 0.868 21 C 0.398 3.602 22 F -0.165 7.165 23 F -0.167 7.167 24 F -0.161 7.161 25 C -0.181 4.181 26 C -0.136 4.136 27 C -0.010 4.010 28 C -0.101 4.101 29 N -0.103 5.103 30 N -0.036 5.036 31 H 0.236 0.764 32 H 0.115 0.885 33 H -0.171 1.171 34 H -0.164 1.164 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.167 0.833 48 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 0.940 2.365 -0.984 2.728 hybrid contribution -1.182 -0.124 1.139 1.647 sum -0.243 2.241 0.156 2.260 Atomic orbital electron populations 1.86629 1.16785 1.80188 1.50163 1.24065 0.85177 1.10674 0.95461 0.95383 0.91213 0.73874 0.82662 1.20362 1.05444 0.92345 0.91809 1.19352 1.04948 0.92207 0.96320 1.20015 0.98800 0.89647 0.99485 1.20766 0.98790 0.98213 0.93900 1.18627 1.06657 0.88852 0.96600 1.21124 0.74495 0.85477 0.83021 1.90877 1.41438 1.86691 1.20161 1.86637 1.76552 1.14468 1.47133 1.23526 1.04366 0.80316 0.97848 1.24479 0.74701 0.91020 0.86611 1.90344 1.32413 1.83936 1.21572 1.21742 0.98591 0.92168 1.02708 0.87099 1.21485 0.93107 1.03385 0.96283 1.21712 0.99574 1.00854 0.94461 1.22494 0.98924 1.04466 0.89024 0.86820 1.20628 0.75417 0.73880 0.90266 1.93184 1.74061 1.76182 1.73068 1.93183 1.36979 1.89489 1.97007 1.93198 1.96035 1.33756 1.93110 1.22087 0.91914 1.05977 0.98168 1.21368 0.99160 0.99922 0.93200 1.20227 0.94613 0.87032 0.99164 1.20310 1.03631 0.91963 0.94216 1.73657 1.23132 0.98370 1.15161 1.43462 1.39959 1.10493 1.09677 0.76370 0.88467 1.17139 1.16387 0.84906 0.84032 0.87416 0.87475 0.89443 0.90026 0.90541 0.89710 0.86916 0.90537 0.90418 0.90402 0.83330 0.70663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.49 12.86 -35.23 -0.45 0.04 16 2 C -0.04 0.10 3.02 36.01 0.11 0.20 16 3 Si 0.67 -2.54 31.14 -169.99 -5.29 -7.83 16 4 C 0.03 0.02 6.23 -81.59 -0.51 -0.49 16 5 C -0.12 -0.28 6.38 -105.16 -0.67 -0.95 16 6 C -0.06 -0.08 10.05 -39.60 -0.40 -0.47 16 7 C -0.10 -0.16 9.47 -39.55 -0.37 -0.53 16 8 C -0.10 -0.27 5.86 -105.06 -0.62 -0.88 16 9 C 0.51 1.56 7.88 34.51 0.27 1.83 16 10 O -0.50 -2.36 16.04 -19.27 -0.31 -2.67 16 11 O -0.33 -0.69 8.91 -47.34 -0.42 -1.11 16 12 C 0.01 -0.01 5.87 36.01 0.21 0.20 16 13 C 0.36 -0.33 5.12 -29.03 -0.15 -0.47 16 14 O -0.41 -0.94 13.37 -13.72 -0.18 -1.12 16 15 C -0.13 0.47 2.94 -91.77 -0.27 0.20 16 16 H 0.11 -0.63 8.14 -51.93 -0.42 -1.05 16 17 C -0.11 0.44 5.42 -26.73 -0.14 0.29 16 18 C -0.13 0.26 4.74 -26.73 -0.13 0.13 16 19 C -0.13 0.15 2.16 -90.61 -0.20 -0.05 16 20 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 21 C 0.45 0.70 2.69 37.16 0.10 0.80 16 22 F -0.18 -0.48 16.80 2.25 0.04 -0.44 16 23 F -0.19 -0.41 16.80 2.25 0.04 -0.38 16 24 F -0.18 -0.57 16.28 2.25 0.04 -0.54 16 25 C -0.14 0.10 4.67 -26.73 -0.12 -0.02 16 26 C -0.10 0.26 5.22 -26.73 -0.14 0.12 16 27 C 0.01 0.03 9.64 -38.70 -0.37 -0.34 16 28 C 0.04 0.15 7.53 -83.13 -0.63 -0.48 16 29 N -0.27 -0.78 12.20 33.22 0.41 -0.38 16 30 N -0.33 -0.10 6.26 33.87 0.21 0.11 16 31 H 0.39 -2.01 8.74 45.56 0.40 -1.61 16 32 H 0.10 -0.41 7.96 -51.93 -0.41 -0.82 16 33 H -0.25 0.37 7.10 56.52 0.40 0.77 16 34 H -0.24 0.43 7.11 56.52 0.40 0.83 16 35 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 36 H 0.14 0.11 7.51 -52.49 -0.39 -0.28 16 37 H 0.11 -0.25 8.14 -51.94 -0.42 -0.67 16 38 H 0.11 -0.25 7.84 -51.93 -0.41 -0.66 16 39 H 0.09 -0.45 8.14 -51.93 -0.42 -0.88 16 40 H 0.08 -0.42 7.84 -51.93 -0.41 -0.83 16 41 H 0.08 -0.04 6.85 -51.93 -0.36 -0.40 16 42 H 0.08 -0.20 7.80 -51.93 -0.41 -0.61 16 43 H 0.11 0.17 4.73 -51.93 -0.25 -0.08 16 44 H 0.08 -0.05 7.80 -51.93 -0.41 -0.45 16 45 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 46 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 47 H 0.15 0.35 7.57 -52.49 -0.40 -0.05 16 48 H 0.45 -1.23 6.87 -190.42 -1.31 -2.54 16 LS Contribution 408.15 15.07 6.15 6.15 Total: 0.00 -10.67 408.15 -10.30 -20.97 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: -6.50 Total: -11.90 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -4.02 Total: -0.91 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: 0.62 Total: -0.26 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -1.37 Total: -4.86 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.11 Total: -1.35 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: -5.29 Total: -7.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -10.67 -10.30 -20.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_12428076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.252 kcal (2) G-P(sol) polarization free energy of solvation -10.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds