Wall clock time and date at job start Sat Mar 6 2021 09:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86303 * 109.46985 * 2 1 4 4 C 1.50704 * 109.47174 * 240.00519 * 2 1 3 5 5 C 1.38145 * 126.53840 * 284.99941 * 4 2 1 6 6 C 1.40913 * 136.20707 * 0.02562 * 5 4 2 7 7 C 1.35350 * 119.76381 * 179.97438 * 6 5 4 8 8 C 1.41052 * 121.52367 * 0.02562 * 7 6 5 9 9 C 1.47516 * 119.29594 * 180.27829 * 8 7 6 10 10 O 1.21504 * 120.00196 * 179.72332 * 9 8 7 11 11 O 1.34755 * 120.00169 * 359.72485 * 9 8 7 12 12 C 1.45201 * 116.99952 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46751 * 179.97438 * 12 11 9 14 14 O 1.20764 * 119.99941 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00045 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.46668 * 314.06347 * 15 13 12 17 17 C 1.53001 * 109.47241 * 74.06272 * 15 13 12 18 18 C 1.53001 * 109.46677 * 60.00251 * 17 15 13 19 19 C 1.53000 * 109.46995 * 60.00287 * 18 17 15 20 20 H 1.08994 * 109.47698 * 60.00032 * 19 18 17 21 21 C 1.53009 * 109.46917 * 179.97438 * 19 18 17 22 22 F 1.39893 * 109.46947 * 179.97438 * 21 19 18 23 23 F 1.39900 * 109.46674 * 299.99905 * 21 19 18 24 24 F 1.39904 * 109.47059 * 59.99476 * 21 19 18 25 25 C 1.53001 * 109.47173 * 299.99409 * 19 18 17 26 26 C 1.52996 * 109.46976 * 60.00268 * 25 19 18 27 27 C 1.38209 * 121.40946 * 359.97438 * 8 7 6 28 28 C 1.40604 * 119.34506 * 0.02562 * 27 8 7 29 29 N 1.32026 * 135.61615 * 179.97438 * 28 27 8 30 30 N 1.28498 * 110.77337 * 180.02562 * 29 28 27 31 31 H 0.96693 * 113.99841 * 299.99787 * 1 2 3 32 32 H 1.08998 * 109.46959 * 120.00172 * 2 1 3 33 33 H 1.48493 * 110.00042 * 300.00302 * 3 2 1 34 34 H 1.48507 * 109.99754 * 61.32135 * 3 2 1 35 35 H 1.07993 * 120.11222 * 359.97438 * 6 5 4 36 36 H 1.07995 * 119.24022 * 179.97438 * 7 6 5 37 37 H 1.08988 * 109.47117 * 299.99649 * 12 11 9 38 38 H 1.08997 * 109.46897 * 60.00330 * 12 11 9 39 39 H 1.08994 * 109.46887 * 180.02562 * 17 15 13 40 40 H 1.08996 * 109.47136 * 300.00186 * 17 15 13 41 41 H 1.08994 * 109.47348 * 299.99579 * 18 17 15 42 42 H 1.09005 * 109.46728 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47063 * 300.00265 * 25 19 18 44 44 H 1.08996 * 109.47136 * 180.02562 * 25 19 18 45 45 H 1.08997 * 109.47532 * 180.02562 * 26 25 19 46 46 H 1.09002 * 109.47227 * 60.00097 * 26 25 19 47 47 H 1.07998 * 120.33218 * 179.97438 * 27 8 7 48 48 H 0.97002 * 123.95370 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2306 5 6 1.9348 -2.0744 -1.4491 6 6 1.5340 -3.2201 -0.7334 7 6 1.6950 -4.4463 -1.2834 8 6 2.2591 -4.6112 -2.5656 9 6 2.4061 -5.9702 -3.1203 10 8 2.8857 -6.1267 -4.2256 11 8 2.0085 -7.0382 -2.4010 12 6 2.1839 -8.3449 -3.0093 13 6 1.6872 -9.4092 -2.0650 14 8 1.2328 -9.0985 -0.9902 15 6 1.7585 -10.8613 -2.4616 16 1 1.3939 -10.9775 -3.4823 17 6 3.2090 -11.3415 -2.3804 18 6 3.7206 -11.1784 -0.9478 19 6 2.8544 -12.0094 0.0009 20 1 2.9060 -13.0597 -0.2859 21 6 3.3664 -11.8468 1.4335 22 9 2.5740 -12.6062 2.3009 23 9 4.6926 -12.2862 1.5073 24 9 3.3007 -10.4988 1.8020 25 6 1.4039 -11.5292 -0.0804 26 6 0.8922 -11.6923 -1.5130 27 6 2.6713 -3.5263 -3.3161 28 6 2.5262 -2.2301 -2.7909 29 7 2.7988 -1.0073 -3.2075 30 7 2.4627 -0.1387 -2.3222 31 1 -0.3933 0.4416 0.7650 32 1 1.7924 -0.5139 0.8900 33 1 1.5615 2.4679 -1.2084 34 1 1.5879 2.4585 1.2243 35 1 1.0998 -3.1201 0.2504 36 1 1.3853 -5.3187 -0.7272 37 1 1.6181 -8.3914 -3.9397 38 1 3.2409 -8.5095 -3.2181 39 1 3.2606 -12.3916 -2.6677 40 1 3.8261 -10.7495 -3.0563 41 1 3.6691 -10.1281 -0.6609 42 1 4.7541 -11.5201 -0.8900 43 1 1.3523 -10.4789 0.2066 44 1 0.7869 -12.1210 0.5958 45 1 -0.1409 -11.3498 -1.5710 46 1 0.9439 -12.7426 -1.7999 47 1 3.1013 -3.6726 -4.2959 48 1 2.5782 0.8183 -2.4309 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_12428076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:53:57 Heat of formation + Delta-G solvation = -200.764328 kcal Electronic energy + Delta-G solvation = -39571.234486 eV Core-core repulsion = 33758.967999 eV Total energy + Delta-G solvation = -5812.266488 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.133 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -51.13361 -48.62956 -48.60951 -43.86099 -41.97511 -41.23936 -38.72223 -38.26433 -38.06267 -37.41659 -33.68269 -33.50684 -32.55046 -31.94263 -31.10992 -30.15132 -27.31003 -26.86084 -26.16675 -24.01924 -23.86723 -23.68817 -22.43486 -21.95190 -21.22530 -20.25828 -19.57076 -19.27947 -19.14718 -18.94193 -18.73010 -18.59791 -18.10736 -17.83209 -17.80228 -16.88401 -16.72276 -16.60523 -16.06056 -15.91160 -15.80419 -15.58656 -15.56428 -15.39282 -15.17969 -15.06836 -14.97854 -14.81497 -14.78491 -14.75235 -14.47240 -14.12962 -14.08995 -14.02683 -13.70679 -13.49159 -13.22892 -13.20845 -13.11675 -13.02795 -12.83753 -12.81159 -12.24381 -12.15973 -12.07618 -11.92621 -11.84643 -11.60057 -11.40721 -11.36992 -11.24944 -10.61926 -10.26699 -10.07939 -8.94092 -5.04867 -0.83529 0.06610 0.84126 1.05083 1.16094 1.22897 1.40467 1.43446 1.62448 1.79117 1.85714 2.62032 2.73824 2.84841 2.97772 3.01334 3.05381 3.09059 3.51489 3.59425 3.61081 3.67389 3.80521 3.86312 3.92633 3.96704 4.03062 4.04320 4.11118 4.15133 4.19422 4.29588 4.34485 4.36563 4.41802 4.44724 4.52179 4.72091 4.80749 4.86941 4.92633 5.00396 5.02475 5.11976 5.14007 5.16720 5.17998 5.22847 5.35825 5.41052 5.63014 5.74643 6.42667 6.51757 6.56400 6.63326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.054 4.054 3 Si 0.754 3.246 4 C 0.046 3.954 5 C -0.143 4.143 6 C -0.053 4.053 7 C -0.107 4.107 8 C -0.106 4.106 9 C 0.517 3.483 10 O -0.525 6.525 11 O -0.341 6.341 12 C 0.002 3.998 13 C 0.363 3.637 14 O -0.451 6.451 15 C -0.127 4.127 16 H 0.143 0.857 17 C -0.101 4.101 18 C -0.130 4.130 19 C -0.122 4.122 20 H 0.137 0.863 21 C 0.443 3.557 22 F -0.192 7.192 23 F -0.190 7.190 24 F -0.194 7.194 25 C -0.146 4.146 26 C -0.098 4.098 27 C -0.003 4.003 28 C 0.026 3.974 29 N -0.292 5.292 30 N -0.317 5.317 31 H 0.405 0.595 32 H 0.122 0.878 33 H -0.279 1.279 34 H -0.264 1.264 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.146 0.854 48 H 0.458 0.542 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 0.593 -0.103 0.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.164 4.164 3 Si 0.654 3.346 4 C -0.090 4.090 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.126 4.126 8 C -0.111 4.111 9 C 0.363 3.637 10 O -0.415 6.415 11 O -0.257 6.257 12 C -0.072 4.072 13 C 0.238 3.762 14 O -0.324 6.324 15 C -0.146 4.146 16 H 0.160 0.840 17 C -0.138 4.138 18 C -0.168 4.168 19 C -0.141 4.141 20 H 0.155 0.845 21 C 0.390 3.610 22 F -0.174 7.174 23 F -0.172 7.172 24 F -0.176 7.176 25 C -0.183 4.183 26 C -0.135 4.135 27 C -0.024 4.024 28 C -0.119 4.119 29 N -0.129 5.129 30 N -0.029 5.029 31 H 0.257 0.743 32 H 0.139 0.861 33 H -0.206 1.206 34 H -0.188 1.188 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.164 0.836 48 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 0.974 1.795 -1.286 2.414 hybrid contribution -1.226 0.093 1.331 1.812 sum -0.252 1.888 0.045 1.905 Atomic orbital electron populations 1.86570 1.17347 1.80923 1.51609 1.24437 0.84944 1.12164 0.94848 0.94378 0.89867 0.70868 0.79461 1.20829 1.03882 0.92019 0.92237 1.19663 1.05815 0.93371 0.96245 1.20262 0.97811 0.89123 1.00105 1.20831 0.99334 0.98722 0.93696 1.18729 1.06660 0.88714 0.97028 1.21171 0.73964 0.85846 0.82673 1.90851 1.42606 1.87043 1.21018 1.86629 1.76225 1.15414 1.47433 1.23912 1.05766 0.78962 0.98512 1.24955 0.73249 0.92260 0.85722 1.90358 1.34356 1.84622 1.23059 1.21825 0.99145 0.89629 1.03977 0.83964 1.21550 0.92458 1.05049 0.94759 1.21756 0.99829 0.99412 0.95801 1.22571 0.98525 1.05942 0.87072 0.84522 1.21189 0.75196 0.73067 0.91588 1.93159 1.74261 1.76308 1.73667 1.93165 1.37447 1.89465 1.97104 1.93165 1.96085 1.34938 1.93383 1.22041 0.92292 1.04272 0.99661 1.21393 0.98825 1.01371 0.91906 1.20241 0.95489 0.87322 0.99328 1.20495 1.04142 0.92162 0.95063 1.73601 1.24441 0.98614 1.16229 1.43548 1.39185 1.10927 1.09256 0.74309 0.86051 1.20582 1.18819 0.82781 0.83531 0.85754 0.85945 0.87198 0.88547 0.92621 0.89276 0.89419 0.91155 0.91084 0.88149 0.83643 0.69261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.48 12.86 -148.98 -1.92 -0.44 16 2 C -0.05 0.30 3.02 71.24 0.21 0.52 16 3 Si 0.75 -6.40 31.14 68.60 2.14 -4.26 16 4 C 0.05 0.04 6.23 42.18 0.26 0.30 16 5 C -0.14 -0.75 6.38 -20.21 -0.13 -0.88 16 6 C -0.05 -0.16 10.05 22.26 0.22 0.06 16 7 C -0.11 -0.48 9.47 22.29 0.21 -0.27 16 8 C -0.11 -0.75 5.86 -20.15 -0.12 -0.87 16 9 C 0.52 3.94 7.88 70.27 0.55 4.50 16 10 O -0.52 -5.66 16.04 19.82 0.32 -5.34 16 11 O -0.34 -1.84 8.91 -50.25 -0.45 -2.29 16 12 C 0.00 0.00 5.87 71.24 0.42 0.41 16 13 C 0.36 -0.61 5.12 29.10 0.15 -0.46 16 14 O -0.45 -2.74 13.37 17.39 0.23 -2.51 16 15 C -0.13 1.10 2.94 -11.54 -0.03 1.07 16 16 H 0.14 -2.05 8.14 -2.38 -0.02 -2.07 16 17 C -0.10 1.05 5.42 30.59 0.17 1.22 16 18 C -0.13 0.57 4.74 30.59 0.14 0.72 16 19 C -0.12 0.30 2.16 -10.79 -0.02 0.27 16 20 H 0.14 -0.97 8.14 -2.39 -0.02 -0.99 16 21 C 0.44 1.83 2.69 71.99 0.19 2.02 16 22 F -0.19 -1.22 16.80 44.97 0.76 -0.47 16 23 F -0.19 -0.98 16.80 44.97 0.76 -0.23 16 24 F -0.19 -1.64 16.28 44.97 0.73 -0.90 16 25 C -0.15 0.13 4.67 30.59 0.14 0.27 16 26 C -0.10 0.62 5.22 30.59 0.16 0.78 16 27 C 0.00 -0.02 9.64 22.84 0.22 0.20 16 28 C 0.03 0.22 7.53 42.13 0.32 0.54 16 29 N -0.29 -2.08 12.20 -48.82 -0.60 -2.68 16 30 N -0.32 -0.32 6.26 -46.77 -0.29 -0.62 16 31 H 0.40 -4.61 8.74 -74.06 -0.65 -5.26 16 32 H 0.12 -1.24 7.96 -2.39 -0.02 -1.26 16 33 H -0.28 0.88 7.10 99.48 0.71 1.59 16 34 H -0.26 1.19 7.11 99.48 0.71 1.90 16 35 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 36 H 0.15 0.44 7.51 -2.91 -0.02 0.41 16 37 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.12 -0.61 7.84 -2.39 -0.02 -0.63 16 39 H 0.11 -1.54 8.14 -2.39 -0.02 -1.56 16 40 H 0.10 -1.23 7.84 -2.39 -0.02 -1.25 16 41 H 0.05 0.00 6.85 -2.39 -0.02 -0.01 16 42 H 0.09 -0.47 7.80 -2.38 -0.02 -0.49 16 43 H 0.09 0.43 4.73 -2.39 -0.01 0.42 16 44 H 0.07 -0.02 7.80 -2.39 -0.02 -0.03 16 45 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 47 H 0.15 1.08 7.57 -2.91 -0.02 1.06 16 48 H 0.46 -2.44 6.87 -219.97 -1.51 -3.95 16 Total: 0.00 -27.56 408.15 3.70 -23.86 By element: Atomic # 1 Polarization: -13.48 SS G_CDS: -1.05 Total: -14.54 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 3.07 Total: 10.41 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -0.89 Total: -3.30 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.81 Total: -10.58 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 2.24 Total: -1.60 kcal Atomic # 14 Polarization: -6.40 SS G_CDS: 2.14 Total: -4.26 kcal Total: -27.56 3.70 -23.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_12428076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.901 kcal (2) G-P(sol) polarization free energy of solvation -27.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds