Wall clock time and date at job start Sat Mar 6 2021 10:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86293 * 109.46937 * 2 1 4 4 C 1.50692 * 109.46867 * 239.99948 * 2 1 3 5 5 C 1.38148 * 126.54827 * 285.00099 * 4 2 1 6 6 C 1.40915 * 136.19428 * 0.02562 * 5 4 2 7 7 C 1.35350 * 119.76130 * 180.02562 * 6 5 4 8 8 C 1.41048 * 121.52428 * 359.97421 * 7 6 5 9 9 C 1.47518 * 119.29586 * 180.02562 * 8 7 6 10 10 O 1.21500 * 119.99624 * 180.02562 * 9 8 7 11 11 O 1.34746 * 120.00272 * 359.97438 * 9 8 7 12 12 C 1.45199 * 117.00100 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47093 * 180.02562 * 12 11 9 14 14 H 1.08993 * 109.46906 * 179.97438 * 13 12 11 15 15 O 1.42960 * 109.46984 * 300.00154 * 13 12 11 16 16 C 1.43095 * 113.76983 * 178.79394 * 15 13 12 17 17 C 1.53266 * 108.94272 * 302.03147 * 16 15 13 18 18 H 1.08996 * 109.67533 * 294.64783 * 17 16 15 19 19 N 1.46500 * 109.57372 * 174.33150 * 17 16 15 20 20 C 1.34525 * 124.46129 * 300.33263 * 19 17 16 21 21 O 1.21453 * 125.70604 * 359.97393 * 20 19 17 22 22 C 1.47818 * 108.58024 * 179.85231 * 20 19 17 23 23 C 1.40946 * 105.87722 * 0.40313 * 22 20 19 24 24 C 1.38564 * 119.81860 * 179.78513 * 23 22 20 25 25 C 1.38610 * 119.72046 * 359.97438 * 24 23 22 26 26 C 1.38232 * 120.45902 * 0.02562 * 25 24 23 27 27 C 1.38567 * 134.29501 * 180.14236 * 22 20 19 28 28 C 1.34527 * 124.46047 * 120.64145 * 19 17 16 29 29 O 1.21443 * 125.70638 * 359.97438 * 28 19 17 30 30 C 1.53258 * 108.84387 * 54.52079 * 17 16 15 31 31 O 1.42969 * 109.46825 * 60.00075 * 13 12 11 32 32 C 1.38213 * 121.40544 * 0.29532 * 8 7 6 33 33 C 1.40602 * 119.34658 * 359.47224 * 32 8 7 34 34 N 1.32034 * 135.62083 * 180.17055 * 33 32 8 35 35 N 1.28491 * 110.77225 * 180.29302 * 34 33 32 36 36 H 0.96699 * 114.00046 * 60.00067 * 1 2 3 37 37 H 1.09003 * 109.46605 * 120.00152 * 2 1 3 38 38 H 1.48497 * 110.00473 * 298.68022 * 3 2 1 39 39 H 1.48503 * 110.00360 * 60.00248 * 3 2 1 40 40 H 1.08006 * 120.11419 * 0.02667 * 6 5 4 41 41 H 1.08000 * 119.23585 * 180.02562 * 7 6 5 42 42 H 1.09005 * 109.47088 * 299.99990 * 12 11 9 43 43 H 1.08997 * 109.47341 * 60.00274 * 12 11 9 44 44 H 1.08997 * 109.55963 * 182.18854 * 16 15 13 45 45 H 1.09007 * 109.55821 * 61.86586 * 16 15 13 46 46 H 1.07998 * 120.14418 * 179.97438 * 24 23 22 47 47 H 1.08001 * 119.77396 * 180.02562 * 25 24 23 48 48 H 1.08005 * 119.77046 * 179.97438 * 26 25 24 49 49 H 1.07995 * 120.14513 * 0.31389 * 27 22 20 50 50 H 1.09008 * 109.55593 * 185.63888 * 30 17 16 51 51 H 1.08998 * 109.55873 * 65.31640 * 30 17 16 52 52 H 1.07998 * 120.32728 * 179.69392 * 32 8 7 53 53 H 0.97005 * 123.94891 * 180.02562 * 35 34 33 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.9347 -2.0745 -1.4490 6 6 1.5338 -3.2201 -0.7332 7 6 1.6958 -4.4465 -1.2826 8 6 2.2598 -4.6115 -2.5648 9 6 2.4129 -5.9710 -3.1165 10 8 2.8976 -6.1279 -4.2196 11 8 2.0163 -7.0389 -2.3968 12 6 2.1978 -8.3461 -3.0021 13 6 1.6925 -9.4265 -2.0438 14 1 1.8283 -10.4078 -2.4984 15 8 2.4298 -9.3612 -0.8207 16 6 2.0114 -10.3189 0.1568 17 6 0.5229 -10.1079 0.4547 18 1 0.3771 -9.1361 0.9263 19 7 0.0472 -11.1646 1.3510 20 6 0.0847 -12.4788 1.0658 21 8 0.5114 -12.9696 0.0401 22 6 -0.4775 -13.2255 2.2110 23 6 -0.8460 -12.2528 3.1620 24 6 -1.4162 -12.6444 4.3627 25 6 -1.6206 -13.9911 4.6194 26 6 -1.2591 -14.9450 3.6866 27 6 -0.6873 -14.5682 2.4815 28 6 -0.4901 -10.9482 2.5652 29 8 -0.6548 -9.8627 3.0842 30 6 -0.2582 -10.1619 -0.8628 31 8 0.3044 -9.2141 -1.7754 32 6 2.6771 -3.5270 -3.3131 33 6 2.5265 -2.2304 -2.7906 34 7 2.7984 -1.0074 -3.2075 35 7 2.4612 -0.1388 -2.3228 36 1 -0.3933 0.4417 -0.7650 37 1 1.7923 -0.5139 0.8900 38 1 1.5880 2.4586 -1.2242 39 1 1.5616 2.4679 1.2085 40 1 1.0989 -3.1199 0.2504 41 1 1.3852 -5.3187 -0.7266 42 1 1.6353 -8.3960 -3.9345 43 1 3.2560 -8.5079 -3.2071 44 1 2.5894 -10.1835 1.0710 45 1 2.1671 -11.3263 -0.2294 46 1 -1.7003 -11.9035 5.0954 47 1 -2.0654 -14.2973 5.5548 48 1 -1.4231 -15.9914 3.8984 49 1 -0.4064 -15.3179 1.7566 50 1 -1.3035 -9.9142 -0.6777 51 1 -0.1885 -11.1632 -1.2876 52 1 3.1111 -3.6737 -4.2911 53 1 2.5760 0.8182 -2.4319 There are 84 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 84 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_13594054.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:58:56 Heat of formation + Delta-G solvation = -90.643753 kcal Electronic energy + Delta-G solvation = -46018.909361 eV Core-core repulsion = 39984.488275 eV Total energy + Delta-G solvation = -6034.421085 eV No. of doubly occupied orbitals = 84 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 466.139 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -43.86024 -43.69606 -41.75824 -41.08973 -39.93860 -39.47504 -38.62709 -38.13373 -37.59686 -37.16308 -37.07985 -34.54102 -33.58605 -32.59589 -32.15546 -31.65033 -31.04177 -29.90995 -27.48081 -27.21239 -26.48118 -26.33908 -25.33575 -24.09080 -23.85541 -23.47587 -22.60688 -22.13248 -21.31585 -20.98816 -19.65994 -19.23935 -19.14748 -18.96508 -18.82775 -18.34978 -18.04021 -17.73982 -17.69832 -17.50427 -17.29618 -17.12448 -16.98839 -16.72465 -16.43971 -16.15532 -15.94106 -15.81522 -15.77993 -15.47990 -15.47654 -15.31629 -15.06357 -15.04476 -14.76683 -14.73950 -14.57708 -14.50202 -14.16442 -13.79515 -13.68936 -13.46948 -13.29341 -13.26891 -13.11278 -12.82758 -12.68269 -12.67642 -12.45691 -12.23058 -12.14416 -11.86183 -11.82106 -11.69088 -11.60788 -11.56350 -11.41617 -10.95488 -10.84529 -10.78301 -10.25144 -10.23750 -10.06131 -8.93110 -5.03033 -1.10331 -0.82237 -0.05323 0.08720 0.88748 0.89692 1.05227 1.18621 1.32207 1.41984 1.44488 1.62898 1.64515 1.91438 2.19669 2.25628 2.45626 2.57991 2.64184 2.98753 3.08330 3.12358 3.17327 3.24270 3.34110 3.43424 3.49666 3.54557 3.70379 3.79300 3.85060 3.93842 3.96832 4.04752 4.06135 4.06762 4.09937 4.15450 4.16115 4.21296 4.26636 4.36414 4.40466 4.44104 4.46038 4.47444 4.57343 4.81067 4.81175 4.88687 5.02023 5.15205 5.18593 5.19094 5.25943 5.35339 5.37472 5.44154 5.64170 5.65995 5.73082 5.77848 5.93350 6.34341 6.35884 6.54584 6.64997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.050 4.050 3 Si 0.760 3.240 4 C 0.008 3.992 5 C -0.140 4.140 6 C -0.054 4.054 7 C -0.104 4.104 8 C -0.104 4.104 9 C 0.515 3.485 10 O -0.532 6.532 11 O -0.335 6.335 12 C 0.080 3.920 13 C 0.242 3.758 14 H 0.109 0.891 15 O -0.382 6.382 16 C 0.051 3.949 17 C 0.076 3.924 18 H 0.121 0.879 19 N -0.569 5.569 20 C 0.576 3.424 21 O -0.481 6.481 22 C -0.159 4.159 23 C -0.159 4.159 24 C -0.045 4.045 25 C -0.084 4.084 26 C -0.084 4.084 27 C -0.043 4.043 28 C 0.576 3.424 29 O -0.487 6.487 30 C 0.051 3.949 31 O -0.383 6.383 32 C -0.005 4.005 33 C 0.027 3.973 34 N -0.292 5.292 35 N -0.314 5.314 36 H 0.389 0.611 37 H 0.149 0.851 38 H -0.261 1.261 39 H -0.282 1.282 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.153 0.847 47 H 0.176 0.824 48 H 0.176 0.824 49 H 0.156 0.844 50 H 0.114 0.886 51 H 0.075 0.925 52 H 0.142 0.858 53 H 0.459 0.541 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 -3.469 7.833 8.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.160 4.160 3 Si 0.661 3.339 4 C -0.127 4.127 5 C -0.149 4.149 6 C -0.074 4.074 7 C -0.123 4.123 8 C -0.110 4.110 9 C 0.361 3.639 10 O -0.423 6.423 11 O -0.250 6.250 12 C 0.006 3.994 13 C 0.147 3.853 14 H 0.126 0.874 15 O -0.302 6.302 16 C -0.026 4.026 17 C -0.026 4.026 18 H 0.139 0.861 19 N -0.313 5.313 20 C 0.367 3.633 21 O -0.354 6.354 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.063 4.063 25 C -0.102 4.102 26 C -0.102 4.102 27 C -0.062 4.062 28 C 0.367 3.633 29 O -0.360 6.360 30 C -0.026 4.026 31 O -0.303 6.303 32 C -0.026 4.026 33 C -0.118 4.118 34 N -0.129 5.129 35 N -0.027 5.027 36 H 0.238 0.762 37 H 0.166 0.834 38 H -0.186 1.186 39 H -0.207 1.207 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.093 0.907 46 H 0.171 0.829 47 H 0.193 0.807 48 H 0.193 0.807 49 H 0.173 0.827 50 H 0.132 0.868 51 H 0.093 0.907 52 H 0.160 0.840 53 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -1.014 -1.746 6.684 6.983 hybrid contribution -1.236 -0.327 -0.395 1.339 sum -2.250 -2.073 6.289 6.994 Atomic orbital electron populations 1.86680 1.17364 1.80366 1.49875 1.24919 0.83828 1.12217 0.94998 0.94283 0.89830 0.70461 0.79376 1.22035 1.04810 0.92646 0.93242 1.19662 1.05752 0.93451 0.95986 1.20264 0.97914 0.89213 1.00045 1.20811 0.99208 0.98785 0.93525 1.18731 1.06533 0.88569 0.97119 1.21251 0.73912 0.86100 0.82608 1.90845 1.42820 1.87196 1.21458 1.86642 1.75831 1.15260 1.47293 1.23334 1.03621 0.77256 0.95184 1.23843 0.77797 0.98144 0.85475 0.87398 1.88235 1.57980 1.58362 1.25596 1.23030 0.92338 0.93334 0.93872 1.22591 0.96558 0.91739 0.91702 0.86116 1.46462 1.57792 1.08523 1.18547 1.18731 0.76350 0.81465 0.86705 1.90797 1.43231 1.73204 1.28152 1.20455 1.05220 0.96003 0.94599 1.20438 1.05910 0.91729 0.98180 1.21159 0.93432 0.98061 0.93675 1.21955 0.96237 0.90963 1.01021 1.21965 0.94266 1.02534 0.91451 1.21161 0.94231 0.92727 0.98032 1.18761 0.75004 0.89463 0.80024 1.90826 1.50719 1.29565 1.64867 1.23032 0.98520 0.94043 0.87035 1.88238 1.24246 1.54704 1.63084 1.20226 0.95567 0.87555 0.99276 1.20450 1.04128 0.92050 0.95179 1.73604 1.23868 0.98572 1.16868 1.43576 1.38714 1.10928 1.09469 0.76165 0.83363 1.18605 1.20749 0.82945 0.83640 0.87545 0.87423 0.86640 0.90705 0.82889 0.80701 0.80660 0.82678 0.86767 0.90705 0.84008 0.69069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.00 12.88 -148.98 -1.92 -0.92 16 2 C -0.05 0.26 3.02 71.23 0.22 0.48 16 3 Si 0.76 -6.34 31.16 68.60 2.14 -4.20 16 4 C 0.01 -0.01 6.19 42.17 0.26 0.25 16 5 C -0.14 -0.65 6.38 -20.22 -0.13 -0.78 16 6 C -0.05 -0.20 10.05 22.26 0.22 0.03 16 7 C -0.10 -0.59 9.46 22.29 0.21 -0.38 16 8 C -0.10 -0.92 5.86 -20.15 -0.12 -1.04 16 9 C 0.51 5.59 7.88 70.27 0.55 6.15 16 10 O -0.53 -7.89 16.04 19.83 0.32 -7.57 16 11 O -0.33 -3.00 9.17 -50.26 -0.46 -3.46 16 12 C 0.08 0.36 5.56 71.98 0.40 0.76 16 13 C 0.24 0.92 3.59 71.98 0.26 1.18 16 14 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 15 O -0.38 -2.23 10.44 -122.14 -1.27 -3.50 16 16 C 0.05 0.16 6.32 72.07 0.46 0.61 16 17 C 0.08 0.27 3.08 45.17 0.14 0.41 16 18 H 0.12 0.65 7.59 -2.39 -0.02 0.64 16 19 N -0.57 -1.95 2.53 -739.55 -1.87 -3.83 16 20 C 0.58 1.90 7.35 86.82 0.64 2.53 16 21 O -0.48 -3.18 15.16 -3.57 -0.05 -3.23 16 22 C -0.16 0.07 6.40 -20.00 -0.13 -0.06 16 23 C -0.16 -0.02 6.40 -20.00 -0.13 -0.15 16 24 C -0.04 0.23 10.09 22.44 0.23 0.46 16 25 C -0.08 0.86 10.04 22.36 0.22 1.08 16 26 C -0.08 0.88 10.04 22.36 0.22 1.10 16 27 C -0.04 0.25 10.09 22.44 0.23 0.48 16 28 C 0.58 2.78 8.02 86.82 0.70 3.48 16 29 O -0.49 -5.00 17.44 -3.54 -0.06 -5.06 16 30 C 0.05 0.17 6.32 72.07 0.46 0.62 16 31 O -0.38 -2.32 10.44 -122.14 -1.28 -3.60 16 32 C -0.01 -0.05 9.64 22.84 0.22 0.17 16 33 C 0.03 0.22 7.53 42.12 0.32 0.54 16 34 N -0.29 -1.78 12.20 -48.83 -0.60 -2.38 16 35 N -0.31 0.38 6.26 -46.77 -0.29 0.09 16 36 H 0.39 -2.90 8.70 -74.06 -0.64 -3.55 16 37 H 0.15 -1.10 7.96 -2.39 -0.02 -1.12 16 38 H -0.26 1.80 7.07 99.48 0.70 2.50 16 39 H -0.28 0.16 7.11 99.48 0.71 0.87 16 40 H 0.15 -0.11 8.06 -2.91 -0.02 -0.13 16 41 H 0.15 0.62 7.51 -2.91 -0.02 0.59 16 42 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.07 0.23 6.67 -2.38 -0.02 0.21 16 46 H 0.15 -1.13 8.06 -2.91 -0.02 -1.16 16 47 H 0.18 -2.83 8.06 -2.91 -0.02 -2.86 16 48 H 0.18 -2.89 8.06 -2.91 -0.02 -2.91 16 49 H 0.16 -1.32 8.06 -2.91 -0.02 -1.34 16 50 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 51 H 0.07 0.24 6.67 -2.39 -0.02 0.22 16 52 H 0.14 1.32 7.57 -2.91 -0.02 1.30 16 53 H 0.46 -3.72 6.85 -219.97 -1.51 -5.23 16 Total: 0.00 -29.96 457.75 -0.98 -30.93 By element: Atomic # 1 Polarization: -10.12 SS G_CDS: -1.07 Total: -11.19 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 5.44 Total: 17.92 kcal Atomic # 7 Polarization: -3.35 SS G_CDS: -2.76 Total: -6.12 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -4.73 Total: -27.34 kcal Atomic # 14 Polarization: -6.34 SS G_CDS: 2.14 Total: -4.20 kcal Total: -29.96 -0.98 -30.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_13594054.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.712 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds