Wall clock time and date at job start Sat Mar 6 2021 11:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47310 * 2 1 4 4 C 1.53007 * 109.47349 * 240.00311 * 2 1 3 5 5 O 1.42897 * 109.47622 * 120.00439 * 2 1 3 6 6 C 1.42900 * 114.00042 * 59.99667 * 5 2 1 7 7 H 1.09001 * 112.85037 * 341.20107 * 6 5 2 8 8 C 1.53776 * 113.69040 * 112.46878 * 6 5 2 9 9 C 1.53779 * 87.08306 * 139.99525 * 8 6 5 10 10 H 1.08993 * 113.69500 * 89.12719 * 9 8 6 11 11 C 1.53008 * 113.61551 * 220.02218 * 9 8 6 12 12 O 1.45202 * 109.46568 * 272.49716 * 11 9 8 13 13 C 1.34759 * 116.99528 * 180.02562 * 12 11 9 14 14 O 1.21495 * 119.99825 * 359.97438 * 13 12 11 15 15 C 1.47509 * 119.99638 * 179.97438 * 13 12 11 16 16 C 1.38214 * 119.29380 * 180.08561 * 15 13 12 17 17 C 1.40603 * 119.34659 * 180.02562 * 16 15 13 18 18 N 1.32025 * 135.61709 * 179.89515 * 17 16 15 19 19 N 1.28495 * 110.77399 * 179.97438 * 18 17 16 20 20 C 1.34194 * 112.09193 * 359.97438 * 19 18 17 21 21 C 1.50704 * 126.54393 * 179.74097 * 20 19 18 22 22 O 1.42896 * 109.47303 * 105.02435 * 21 20 19 23 23 Si 1.86299 * 109.47307 * 345.02170 * 21 20 19 24 24 C 1.38137 * 106.91221 * 0.02562 * 20 19 18 25 25 C 1.40909 * 136.20232 * 179.97438 * 24 20 19 26 26 C 1.35359 * 119.76718 * 180.02562 * 25 24 20 27 27 C 1.53780 * 87.08094 * 334.56608 * 9 8 6 28 28 H 1.09001 * 109.46747 * 299.99325 * 1 2 3 29 29 H 1.08992 * 109.47253 * 59.99943 * 1 2 3 30 30 H 1.09000 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47191 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47159 * 300.00638 * 3 2 1 33 33 H 1.09005 * 109.46957 * 59.99932 * 3 2 1 34 34 H 1.09001 * 109.47051 * 300.00322 * 4 2 1 35 35 H 1.09004 * 109.46723 * 59.99606 * 4 2 1 36 36 H 1.08993 * 109.47688 * 179.97438 * 4 2 1 37 37 H 1.08998 * 113.61633 * 25.44605 * 8 6 5 38 38 H 1.08999 * 113.61443 * 254.54125 * 8 6 5 39 39 H 1.08994 * 109.47247 * 152.49452 * 11 9 8 40 40 H 1.08998 * 109.46720 * 32.49400 * 11 9 8 41 41 H 1.07994 * 120.32689 * 359.94034 * 16 15 13 42 42 H 0.97001 * 123.95911 * 179.97438 * 19 18 17 43 43 H 1.09005 * 109.47111 * 225.02657 * 21 20 19 44 44 H 0.96698 * 114.00173 * 300.00551 * 22 21 20 45 45 H 1.48495 * 110.00295 * 179.97438 * 23 21 20 46 46 H 1.48505 * 110.00329 * 301.32525 * 23 21 20 47 47 H 1.08002 * 120.11664 * 0.04223 * 25 24 20 48 48 H 1.08000 * 119.24232 * 180.02562 * 26 25 24 49 49 H 1.08996 * 113.61872 * 139.97982 * 27 9 8 50 50 H 1.09007 * 113.61689 * 270.80409 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5848 -2.0356 1.2644 7 1 0.7236 -2.2583 0.6343 8 6 2.7320 -3.0494 1.1204 9 6 2.0542 -3.8566 2.2402 10 1 1.3214 -4.5777 1.8783 11 6 3.0397 -4.4627 3.2415 12 8 3.4791 -5.7611 2.7626 13 6 4.3556 -6.4332 3.5346 14 8 4.7424 -5.9474 4.5789 15 6 4.8455 -7.7588 3.1116 16 6 5.7429 -8.4362 3.9154 17 6 6.2109 -9.6995 3.5131 18 7 7.0413 -10.5993 4.0069 19 7 7.1272 -11.6168 3.2270 20 6 6.3556 -11.4839 2.1371 21 6 6.2137 -12.4761 1.0117 22 8 4.9575 -13.1479 1.1244 23 14 7.5951 -13.7226 1.1048 24 6 5.7212 -10.2612 2.2406 25 6 4.8045 -9.5223 1.4665 26 6 4.3852 -8.3096 1.8974 27 6 1.4334 -2.5313 2.7122 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 3.7065 -2.6487 1.3995 38 1 2.7437 -3.5619 0.1585 39 1 2.5501 -4.5786 4.2084 40 1 3.9015 -3.8037 3.3473 41 1 6.0823 -7.9989 4.8427 42 1 7.6845 -12.3905 3.4050 43 1 6.2611 -11.9519 0.0571 44 1 4.8455 -13.6364 1.9513 45 1 7.4662 -14.7071 0.0006 46 1 8.9078 -13.0334 1.0208 47 1 4.4375 -9.9223 0.5329 48 1 3.6821 -7.7507 1.2976 49 1 0.3966 -2.6254 3.0353 50 1 2.0522 -1.9895 3.4276 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_14598394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:50:17 Heat of formation + Delta-G solvation = -38.689701 kcal Electronic energy + Delta-G solvation = -31463.351322 eV Core-core repulsion = 27039.163366 eV Total energy + Delta-G solvation = -4424.187956 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.84549 -41.69179 -40.79784 -38.83283 -38.27309 -37.96575 -37.30218 -33.90211 -33.55766 -32.50376 -31.02785 -29.83250 -28.34178 -28.31854 -27.11313 -26.63086 -26.29247 -24.01966 -23.65427 -22.34577 -21.30280 -20.85765 -20.62368 -19.50359 -19.10482 -18.30200 -17.98523 -17.72008 -17.53621 -17.38823 -17.05254 -16.54849 -16.04958 -15.86933 -15.77483 -15.59685 -15.46485 -15.00882 -14.82848 -14.60736 -14.42875 -14.20608 -14.05681 -13.65436 -13.45866 -13.33523 -13.30904 -13.15143 -13.11564 -12.96637 -12.78286 -12.64976 -12.57844 -12.40867 -12.27137 -12.18335 -11.94303 -11.81032 -11.58656 -11.51680 -11.40434 -11.32527 -11.16059 -10.62430 -10.34705 -10.05355 -8.92493 -5.19621 -0.81789 0.09407 1.05264 1.19502 1.36769 1.43823 1.53902 1.72961 1.91498 2.64459 2.73209 3.00837 3.15183 3.40392 3.47629 3.53310 3.58661 3.77558 3.80029 3.84805 3.92869 3.97408 3.99439 4.05829 4.10407 4.13740 4.21654 4.28284 4.36867 4.39712 4.47558 4.52652 4.64069 4.68774 4.78450 4.79001 4.79898 4.80774 4.85617 4.92529 4.95392 5.01728 5.05843 5.13227 5.16675 5.19385 5.23480 5.33290 5.34643 5.37483 5.41870 5.65291 5.82443 6.43811 6.57086 6.62582 6.68073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 C -0.140 4.140 4 C -0.173 4.173 5 O -0.383 6.383 6 C 0.061 3.939 7 H 0.106 0.894 8 C -0.149 4.149 9 C -0.100 4.100 10 H 0.120 0.880 11 C 0.077 3.923 12 O -0.343 6.343 13 C 0.513 3.487 14 O -0.537 6.537 15 C -0.105 4.105 16 C -0.009 4.009 17 C 0.025 3.975 18 N -0.293 5.293 19 N -0.309 5.309 20 C 0.004 3.996 21 C -0.036 4.036 22 O -0.542 6.542 23 Si 0.773 3.227 24 C -0.144 4.144 25 C -0.056 4.056 26 C -0.104 4.104 27 C -0.126 4.126 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.138 0.862 42 H 0.462 0.538 43 H 0.135 0.865 44 H 0.398 0.602 45 H -0.280 1.280 46 H -0.278 1.278 47 H 0.155 0.845 48 H 0.155 0.845 49 H 0.091 0.909 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -5.275 -4.171 7.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.058 3.942 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.303 6.303 6 C 0.003 3.997 7 H 0.123 0.877 8 C -0.186 4.186 9 C -0.118 4.118 10 H 0.138 0.862 11 C 0.004 3.996 12 O -0.259 6.259 13 C 0.359 3.641 14 O -0.428 6.428 15 C -0.110 4.110 16 C -0.030 4.030 17 C -0.120 4.120 18 N -0.130 5.130 19 N -0.023 5.023 20 C -0.132 4.132 21 C -0.147 4.147 22 O -0.349 6.349 23 Si 0.676 3.324 24 C -0.152 4.152 25 C -0.076 4.076 26 C -0.123 4.123 27 C -0.164 4.164 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.156 0.844 42 H 0.313 0.687 43 H 0.152 0.848 44 H 0.249 0.751 45 H -0.205 1.205 46 H -0.204 1.204 47 H 0.172 0.828 48 H 0.173 0.827 49 H 0.109 0.891 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.670 -5.287 -3.761 6.522 hybrid contribution -0.257 0.560 -0.480 0.781 sum -0.926 -4.727 -4.241 6.418 Atomic orbital electron populations 1.22442 0.94812 1.02895 1.03203 1.21688 0.93804 0.93251 0.85412 1.21798 1.01535 0.93406 1.02971 1.22440 1.01718 1.01091 0.97811 1.88020 1.74279 1.24265 1.43693 1.23673 0.97325 0.81168 0.97526 0.87664 1.23601 0.98899 0.96680 0.99443 1.22330 0.97633 0.95939 0.95929 0.86184 1.23231 0.97912 0.80113 0.98379 1.86529 1.56406 1.33111 1.49840 1.21289 0.76033 0.85605 0.81159 1.90848 1.57263 1.69508 1.25229 1.18762 1.01772 0.92146 0.98333 1.20239 0.93609 0.90346 0.98833 1.20455 0.99517 0.96189 0.95816 1.73598 1.22293 0.97522 1.19634 1.43530 1.30431 1.15709 1.12595 1.22129 0.98634 0.98630 0.93786 1.24840 0.97214 0.97078 0.95588 1.86564 1.34729 1.68385 1.45177 0.94433 0.72702 0.76764 0.88537 1.19714 1.02938 0.95264 0.97310 1.20307 0.94662 0.93090 0.99492 1.20864 1.00728 0.96105 0.94601 1.23228 1.02400 0.93890 0.96836 0.92251 0.90432 0.91607 0.92564 0.89712 0.92367 0.91815 0.90595 0.92594 0.90499 0.90117 0.90702 0.91552 0.84399 0.68708 0.84751 0.75117 1.20537 1.20445 0.82754 0.82733 0.89071 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.31 8.38 71.98 0.60 0.91 16 2 C 0.10 0.07 1.11 -10.79 -0.01 0.06 16 3 C -0.14 -0.05 8.84 71.98 0.64 0.59 16 4 C -0.17 0.19 8.38 71.98 0.60 0.79 16 5 O -0.38 -1.69 10.00 -148.98 -1.49 -3.18 16 6 C 0.06 0.00 2.82 31.12 0.09 0.09 16 7 H 0.11 -0.29 5.54 -2.39 -0.01 -0.31 16 8 C -0.15 -0.03 7.47 31.12 0.23 0.20 16 9 C -0.10 0.10 4.02 -10.27 -0.04 0.06 16 10 H 0.12 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C 0.08 0.26 5.31 71.98 0.38 0.64 16 12 O -0.34 -1.94 9.37 -56.70 -0.53 -2.47 16 13 C 0.51 4.83 7.88 70.27 0.55 5.38 16 14 O -0.54 -8.12 16.04 19.85 0.32 -7.80 16 15 C -0.10 -0.73 5.86 -20.15 -0.12 -0.84 16 16 C -0.01 -0.08 9.64 22.84 0.22 0.14 16 17 C 0.03 0.18 7.53 42.12 0.32 0.49 16 18 N -0.29 -1.43 12.20 -48.83 -0.60 -2.02 16 19 N -0.31 0.94 6.26 -46.77 -0.29 0.65 16 20 C 0.00 -0.01 6.19 42.18 0.26 0.25 16 21 C -0.04 0.24 3.02 71.24 0.22 0.46 16 22 O -0.54 3.25 12.88 -148.98 -1.92 1.33 16 23 Si 0.77 -7.27 31.14 68.60 2.14 -5.13 16 24 C -0.14 -0.44 6.38 -20.22 -0.13 -0.57 16 25 C -0.06 -0.06 10.05 22.26 0.22 0.16 16 26 C -0.10 -0.25 9.47 22.29 0.21 -0.04 16 27 C -0.13 0.10 7.47 31.12 0.23 0.33 16 28 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.07 -0.20 6.24 -2.39 -0.01 -0.21 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 34 H 0.06 -0.13 7.02 -2.39 -0.02 -0.15 16 35 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.05 0.04 8.14 -2.39 -0.02 0.03 16 37 H 0.08 0.25 7.90 -2.39 -0.02 0.23 16 38 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.07 0.34 7.84 -2.39 -0.02 0.32 16 41 H 0.14 1.24 7.57 -2.91 -0.02 1.22 16 42 H 0.46 -5.21 6.88 -219.98 -1.51 -6.73 16 43 H 0.14 -0.91 7.96 -2.38 -0.02 -0.93 16 44 H 0.40 -5.52 8.70 -74.06 -0.64 -6.16 16 45 H -0.28 0.54 7.11 99.48 0.71 1.24 16 46 H -0.28 1.07 7.11 99.48 0.71 1.78 16 47 H 0.15 -0.55 8.06 -2.91 -0.02 -0.58 16 48 H 0.16 -0.19 7.51 -2.91 -0.02 -0.21 16 49 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 50 H 0.08 0.12 8.10 -2.38 -0.02 0.11 16 Total: 0.00 -22.17 410.81 0.96 -21.21 By element: Atomic # 1 Polarization: -10.55 SS G_CDS: -1.15 Total: -11.70 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.48 Total: 9.11 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -0.89 Total: -1.37 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -3.62 Total: -12.12 kcal Atomic # 14 Polarization: -7.27 SS G_CDS: 2.14 Total: -5.13 kcal Total: -22.17 0.96 -21.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_14598394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.481 kcal (2) G-P(sol) polarization free energy of solvation -22.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds