Wall clock time and date at job start Sat Mar 6 2021 12:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46791 * 2 1 4 4 C 1.53001 * 109.47224 * 239.99865 * 2 1 3 5 5 O 1.45206 * 109.46809 * 119.99975 * 2 1 3 6 6 C 1.34631 * 117.00074 * 60.00025 * 5 2 1 7 7 O 1.21514 * 120.00236 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99804 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00004 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.84863 * 336.19558 * 9 8 6 11 11 C 1.53781 * 113.69475 * 107.45794 * 9 8 6 12 12 C 1.53785 * 87.08021 * 139.99177 * 11 9 8 13 13 H 1.09003 * 113.68940 * 89.12724 * 12 11 9 14 14 C 1.53000 * 113.61490 * 220.02060 * 12 11 9 15 15 O 1.45198 * 109.46978 * 272.49832 * 14 12 11 16 16 C 1.34754 * 116.99852 * 180.02562 * 15 14 12 17 17 O 1.21507 * 119.99731 * 0.27071 * 16 15 14 18 18 C 1.47516 * 120.00093 * 180.02562 * 16 15 14 19 19 C 1.38209 * 119.29516 * 179.97438 * 18 16 15 20 20 C 1.40603 * 119.34663 * 180.02562 * 19 18 16 21 21 N 1.32025 * 135.61669 * 180.02562 * 20 19 18 22 22 N 1.28500 * 110.77193 * 179.97438 * 21 20 19 23 23 C 1.34193 * 112.09108 * 0.02562 * 22 21 20 24 24 C 1.50696 * 126.54040 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.47539 * 105.02444 * 24 23 22 26 26 Si 1.86297 * 109.47370 * 345.01799 * 24 23 22 27 27 C 1.38140 * 106.91214 * 359.97438 * 23 22 21 28 28 C 1.40917 * 136.19887 * 180.02562 * 27 23 22 29 29 C 1.35356 * 119.76090 * 179.69973 * 28 27 23 30 30 C 1.53779 * 113.61567 * 204.99957 * 9 8 6 31 31 H 1.08998 * 109.46952 * 300.00187 * 1 2 3 32 32 H 1.08994 * 109.46948 * 60.00431 * 1 2 3 33 33 H 1.08998 * 109.46621 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46918 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47378 * 299.99901 * 3 2 1 36 36 H 1.08998 * 109.47525 * 60.00164 * 3 2 1 37 37 H 1.08997 * 109.46717 * 299.99926 * 4 2 1 38 38 H 1.08997 * 109.46914 * 60.00118 * 4 2 1 39 39 H 1.08998 * 109.47144 * 179.97438 * 4 2 1 40 40 H 0.97000 * 119.99946 * 359.97438 * 8 6 5 41 41 H 1.08998 * 113.60864 * 25.44952 * 11 9 8 42 42 H 1.08995 * 113.61883 * 254.53910 * 11 9 8 43 43 H 1.09006 * 109.46668 * 152.49836 * 14 12 11 44 44 H 1.08998 * 109.47020 * 32.49985 * 14 12 11 45 45 H 1.07999 * 120.32772 * 0.02562 * 19 18 16 46 46 H 0.96998 * 123.95607 * 180.02562 * 22 21 20 47 47 H 1.09002 * 109.46718 * 225.02159 * 24 23 22 48 48 H 0.96704 * 113.99345 * 299.99527 * 25 24 23 49 49 H 1.48500 * 110.00501 * 180.02562 * 26 24 23 50 50 H 1.48495 * 110.00500 * 301.32638 * 26 24 23 51 51 H 1.07996 * 120.11704 * 359.97438 * 28 27 23 52 52 H 1.08000 * 119.23577 * 180.26962 * 29 28 27 53 53 H 1.08994 * 113.61645 * 105.38115 * 30 9 8 54 54 H 1.09006 * 113.61063 * 334.47872 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0680 -2.6656 2.4168 9 6 1.6749 -4.0671 2.5828 10 1 0.7605 -4.3167 2.0445 11 6 2.8218 -5.0632 2.3435 12 6 2.2731 -5.8609 3.5384 13 1 1.5222 -6.6014 3.2628 14 6 3.3638 -6.4306 4.4477 15 8 3.7790 -7.7299 3.9500 16 6 4.7399 -8.3719 4.6430 17 8 5.2143 -7.8621 5.6387 18 6 5.2122 -9.6960 4.1959 19 6 6.1988 -10.3412 4.9173 20 6 6.6501 -11.6030 4.4917 21 7 7.5423 -12.4785 4.9165 22 7 7.5716 -13.5084 4.1486 23 6 6.6955 -13.4087 3.1369 24 6 6.4600 -14.4261 2.0504 25 8 5.2313 -15.1121 2.2984 26 14 7.8630 -15.6516 2.0325 27 6 6.0501 -12.1961 3.2823 28 6 5.0476 -11.4881 2.5899 29 6 4.6437 -10.2786 3.0440 30 6 1.6761 -4.5380 4.0467 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6768 -1.7489 -1.2491 38 1 1.6768 -0.2075 -2.1392 39 1 3.1301 -0.7209 -1.2494 40 1 2.6282 -2.2369 3.0826 41 1 3.8110 -4.6401 2.5183 42 1 2.7487 -5.5934 1.3941 43 1 2.9738 -6.5368 5.4600 44 1 4.2189 -5.7548 4.4567 45 1 6.6190 -9.8807 5.7992 46 1 8.1582 -14.2689 4.2843 47 1 6.4061 -13.9214 1.0858 48 1 5.2080 -15.5848 3.1417 49 1 7.6430 -16.6601 0.9649 50 1 9.1504 -14.9468 1.8072 51 1 4.6001 -11.9109 1.7027 52 1 3.8717 -9.7453 2.5092 53 1 0.6782 -4.6442 4.4720 54 1 2.3522 -3.9714 4.6870 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_15734238.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 12:30:06 Heat of formation + Delta-G solvation = -72.644070 kcal Electronic energy + Delta-G solvation = -36885.739855 eV Core-core repulsion = 31792.207665 eV Total energy + Delta-G solvation = -5093.532190 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.187 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.83927 -41.93802 -41.59916 -40.29904 -38.59194 -38.00325 -37.96030 -37.35942 -35.41052 -34.23898 -33.55133 -32.48769 -31.02147 -29.73854 -28.38225 -28.31716 -27.13769 -26.74943 -26.35543 -24.69022 -23.96723 -22.63989 -22.20459 -21.41775 -21.29422 -20.56103 -19.52876 -19.16918 -19.02055 -18.33598 -17.99724 -17.72961 -17.55069 -17.37647 -17.18216 -17.07359 -16.55155 -16.26909 -15.85985 -15.64062 -15.58133 -15.45601 -15.40545 -15.01886 -14.79816 -14.62021 -14.43500 -14.21979 -13.70701 -13.64325 -13.48245 -13.37977 -13.32012 -13.17347 -13.10490 -12.98782 -12.90350 -12.88154 -12.57997 -12.53664 -12.44909 -12.27913 -12.25259 -11.99113 -11.82701 -11.60304 -11.51460 -11.40690 -11.39909 -11.26249 -11.11290 -10.62589 -10.15972 -10.04488 -8.91836 -5.19879 -0.80618 0.10262 1.05137 1.14985 1.20421 1.40721 1.45838 1.54650 1.72059 1.74283 1.91617 2.65459 3.00642 3.12546 3.16694 3.37650 3.43368 3.47504 3.59015 3.72883 3.74337 3.79050 3.80206 3.86541 3.93048 3.98435 4.06872 4.18561 4.26619 4.31218 4.37594 4.40069 4.49496 4.50900 4.59819 4.62734 4.70695 4.74950 4.77883 4.78921 4.81957 4.85018 4.86084 4.95799 5.01806 5.06047 5.09308 5.17321 5.19809 5.25695 5.26549 5.32042 5.38934 5.50398 5.58758 5.65806 5.82784 6.39052 6.60245 6.62477 6.68302 7.32931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.690 5.690 9 C 0.135 3.865 10 H 0.109 0.891 11 C -0.147 4.147 12 C -0.098 4.098 13 H 0.116 0.884 14 C 0.075 3.925 15 O -0.345 6.345 16 C 0.515 3.485 17 O -0.535 6.535 18 C -0.106 4.106 19 C -0.008 4.008 20 C 0.025 3.975 21 N -0.292 5.292 22 N -0.310 5.310 23 C 0.003 3.997 24 C -0.037 4.037 25 O -0.542 6.542 26 Si 0.774 3.226 27 C -0.145 4.145 28 C -0.057 4.057 29 C -0.104 4.104 30 C -0.122 4.122 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.417 0.583 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.140 0.860 46 H 0.462 0.538 47 H 0.135 0.865 48 H 0.398 0.602 49 H -0.280 1.280 50 H -0.277 1.277 51 H 0.153 0.847 52 H 0.154 0.846 53 H 0.096 0.904 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -3.617 -0.006 3.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.349 5.349 9 C 0.032 3.968 10 H 0.127 0.873 11 C -0.185 4.185 12 C -0.117 4.117 13 H 0.134 0.866 14 C 0.002 3.998 15 O -0.261 6.261 16 C 0.361 3.639 17 O -0.426 6.426 18 C -0.111 4.111 19 C -0.029 4.029 20 C -0.120 4.120 21 N -0.130 5.130 22 N -0.023 5.023 23 C -0.133 4.133 24 C -0.148 4.148 25 O -0.349 6.349 26 Si 0.676 3.324 27 C -0.153 4.153 28 C -0.077 4.077 29 C -0.123 4.123 30 C -0.160 4.160 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.254 0.746 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.158 0.842 46 H 0.313 0.687 47 H 0.152 0.848 48 H 0.249 0.751 49 H -0.206 1.206 50 H -0.204 1.204 51 H 0.170 0.830 52 H 0.172 0.828 53 H 0.115 0.885 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.676 -3.876 -0.325 4.236 hybrid contribution -0.135 0.637 -0.340 0.734 sum 1.541 -3.239 -0.665 3.649 Atomic orbital electron populations 1.22474 0.93976 1.03730 1.03525 1.22349 0.94508 0.92553 0.81514 1.21893 1.02417 0.90938 1.04262 1.22472 1.01571 1.02284 0.97393 1.86313 1.71552 1.23407 1.47257 1.18433 0.78578 0.80686 0.82653 1.90901 1.42374 1.71031 1.44186 1.44786 1.54761 1.12325 1.23072 1.22561 0.98913 0.77036 0.98315 0.87281 1.23622 0.99004 0.96753 0.99165 1.22330 0.97222 0.96475 0.95701 0.86578 1.23280 0.97798 0.80249 0.98474 1.86538 1.51510 1.34101 1.53956 1.21204 0.76730 0.85538 0.80433 1.90850 1.57024 1.68079 1.26684 1.18780 1.00479 0.92486 0.99372 1.20246 0.93759 0.90488 0.98445 1.20473 0.97987 0.96411 0.97095 1.73598 1.22678 0.97396 1.19327 1.43526 1.27071 1.15679 1.16005 1.22115 0.96501 0.98865 0.95771 1.24843 0.97896 0.96343 0.95724 1.86569 1.34925 1.68568 1.44828 0.94444 0.72474 0.76715 0.88743 1.19715 1.01820 0.95285 0.98465 1.20299 0.94408 0.93509 0.99501 1.20864 1.00598 0.95843 0.94986 1.23362 1.03489 0.94143 0.94965 0.91912 0.89472 0.91733 0.91258 0.88307 0.91157 0.91751 0.89465 0.92052 0.74591 0.89142 0.90963 0.90303 0.90727 0.84238 0.68723 0.84828 0.75130 1.20588 1.20369 0.82966 0.82816 0.88504 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.64 8.37 71.99 0.60 -0.04 16 2 C 0.13 0.44 1.13 -10.79 -0.01 0.42 16 3 C -0.14 0.22 8.85 71.98 0.64 0.85 16 4 C -0.18 -0.69 8.37 71.98 0.60 -0.09 16 5 O -0.37 -2.21 9.94 -55.41 -0.55 -2.76 16 6 C 0.64 4.48 8.06 129.79 1.05 5.52 16 7 O -0.59 -7.25 11.48 19.80 0.23 -7.03 16 8 N -0.69 -0.24 5.36 -567.61 -3.04 -3.29 16 9 C 0.14 -0.22 4.24 45.52 0.19 -0.03 16 10 H 0.11 0.17 7.46 -2.39 -0.02 0.15 16 11 C -0.15 0.31 7.43 31.12 0.23 0.54 16 12 C -0.10 0.41 4.02 -10.27 -0.04 0.37 16 13 H 0.12 -0.56 8.14 -2.39 -0.02 -0.58 16 14 C 0.08 -0.04 5.31 71.98 0.38 0.35 16 15 O -0.34 -1.23 9.37 -56.65 -0.53 -1.76 16 16 C 0.51 3.89 7.88 70.27 0.55 4.44 16 17 O -0.54 -6.79 16.04 19.81 0.32 -6.48 16 18 C -0.11 -0.63 5.86 -20.15 -0.12 -0.75 16 19 C -0.01 -0.06 9.64 22.84 0.22 0.16 16 20 C 0.03 0.16 7.53 42.12 0.32 0.48 16 21 N -0.29 -1.31 12.20 -48.83 -0.60 -1.90 16 22 N -0.31 1.00 6.26 -46.78 -0.29 0.71 16 23 C 0.00 -0.01 6.19 42.17 0.26 0.25 16 24 C -0.04 0.24 3.02 71.23 0.22 0.46 16 25 O -0.54 3.11 12.88 -148.98 -1.92 1.19 16 26 Si 0.77 -7.22 31.14 68.60 2.14 -5.08 16 27 C -0.14 -0.43 6.38 -20.22 -0.13 -0.56 16 28 C -0.06 -0.07 10.05 22.26 0.22 0.16 16 29 C -0.10 -0.22 9.46 22.29 0.21 -0.01 16 30 C -0.12 0.77 7.39 31.12 0.23 1.00 16 31 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 34 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 35 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 38 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.42 -1.73 8.84 -92.71 -0.82 -2.54 16 41 H 0.09 -0.20 7.90 -2.39 -0.02 -0.22 16 42 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.08 -0.06 8.14 -2.38 -0.02 -0.07 16 44 H 0.07 -0.02 7.84 -2.39 -0.02 -0.04 16 45 H 0.14 1.08 7.57 -2.91 -0.02 1.06 16 46 H 0.46 -5.28 6.88 -219.98 -1.51 -6.79 16 47 H 0.13 -0.87 7.96 -2.39 -0.02 -0.88 16 48 H 0.40 -5.43 8.70 -74.05 -0.64 -6.08 16 49 H -0.28 0.50 7.11 99.48 0.71 1.20 16 50 H -0.28 1.08 7.11 99.48 0.71 1.79 16 51 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 52 H 0.15 -0.20 7.51 -2.91 -0.02 -0.23 16 53 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 54 H 0.11 -0.91 8.08 -2.38 -0.02 -0.93 16 Total: 0.00 -27.04 446.19 -0.59 -27.63 By element: Atomic # 1 Polarization: -12.82 SS G_CDS: -1.97 Total: -14.78 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.63 Total: 13.55 kcal Atomic # 7 Polarization: -0.55 SS G_CDS: -3.93 Total: -4.48 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -2.46 Total: -16.83 kcal Atomic # 14 Polarization: -7.22 SS G_CDS: 2.14 Total: -5.08 kcal Total: -27.04 -0.59 -27.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_15734238.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.014 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds