Wall clock time and date at job start Sat Mar 6 2021 09:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47365 * 2 1 4 4 C 1.50697 * 109.47398 * 239.99424 * 2 1 3 5 5 C 1.38139 * 126.54846 * 285.00457 * 4 2 1 6 6 C 1.40914 * 136.19914 * 359.96801 * 5 4 2 7 7 C 1.35348 * 119.76293 * 179.97438 * 6 5 4 8 8 C 1.41043 * 121.52595 * 359.97438 * 7 6 5 9 9 C 1.47518 * 119.29608 * 179.97438 * 8 7 6 10 10 O 1.21504 * 119.99679 * 179.97438 * 9 8 7 11 11 O 1.34746 * 120.00337 * 359.97438 * 9 8 7 12 12 C 1.45203 * 117.00350 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47234 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47153 * 304.99718 * 13 12 11 15 15 C 1.53000 * 109.47060 * 65.00037 * 13 12 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46963 * 299.99499 * 16 15 13 18 18 H 1.09002 * 109.47067 * 300.00341 * 17 16 15 19 19 O 1.42900 * 109.47442 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47092 * 60.00194 * 17 16 15 21 21 C 1.53002 * 109.46817 * 184.99949 * 13 12 11 22 22 C 1.38214 * 121.40523 * 0.25152 * 8 7 6 23 23 C 1.40596 * 119.34684 * 359.50298 * 22 8 7 24 24 N 1.32027 * 135.62330 * 180.15242 * 23 22 8 25 25 N 1.28485 * 110.77928 * 180.30755 * 24 23 22 26 26 H 0.96696 * 114.00248 * 300.00708 * 1 2 3 27 27 H 1.09001 * 109.46478 * 119.99640 * 2 1 3 28 28 H 1.48499 * 109.99983 * 299.99794 * 3 2 1 29 29 H 1.48504 * 110.00267 * 61.31475 * 3 2 1 30 30 H 1.08001 * 120.11539 * 359.97284 * 6 5 4 31 31 H 1.08000 * 119.23929 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.46958 * 59.99413 * 12 11 9 33 33 H 1.09004 * 109.46701 * 300.00089 * 12 11 9 34 34 H 1.09001 * 109.47194 * 299.99650 * 15 13 12 35 35 H 1.08992 * 109.47399 * 59.99823 * 15 13 12 36 36 H 1.09000 * 109.47437 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.47508 * 59.99571 * 16 15 13 38 38 H 0.96697 * 113.99983 * 59.99480 * 19 17 16 39 39 H 1.09001 * 109.47375 * 180.02562 * 20 17 16 40 40 H 1.09002 * 109.47497 * 59.99850 * 20 17 16 41 41 H 1.09002 * 109.47075 * 299.99262 * 21 13 12 42 42 H 1.08996 * 109.47407 * 60.00219 * 21 13 12 43 43 H 1.08003 * 120.32222 * 179.72399 * 22 8 7 44 44 H 0.97003 * 123.95708 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.9348 -2.0745 -1.4489 6 6 1.5348 -3.2202 -0.7327 7 6 1.6955 -4.4465 -1.2826 8 6 2.2574 -4.6114 -2.5657 9 6 2.4103 -5.9709 -3.1175 10 8 2.8923 -6.1277 -4.2218 11 8 2.0155 -7.0389 -2.3969 12 6 2.1966 -8.3462 -3.0024 13 6 1.6936 -9.4266 -2.0430 14 1 2.1946 -9.3201 -1.0809 15 6 0.1832 -9.2752 -1.8511 16 6 -0.3197 -10.3553 -0.8913 17 6 -0.0157 -11.7370 -1.4739 18 1 -0.5168 -11.8439 -2.4360 19 8 -0.4859 -12.7459 -0.5778 20 6 1.4946 -11.8885 -1.6659 21 6 1.9976 -10.8081 -2.6262 22 6 2.6729 -3.5267 -3.3148 23 6 2.5234 -2.2302 -2.7919 24 7 2.7945 -1.0073 -3.2092 25 7 2.4592 -0.1388 -2.3237 26 1 -0.3933 0.4418 0.7649 27 1 1.7923 -0.5138 0.8901 28 1 1.5617 2.4678 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 1.1015 -3.1202 0.2516 31 1 1.3856 -5.3188 -0.7264 32 1 3.2546 -8.5073 -3.2093 33 1 1.6325 -8.3965 -3.9337 34 1 -0.0334 -8.2910 -1.4356 35 1 -0.3178 -9.3817 -2.8132 36 1 -1.3958 -10.2478 -0.7548 37 1 0.1814 -10.2484 0.0708 38 1 -1.4375 -12.7102 -0.4096 39 1 1.7112 -12.8726 -2.0814 40 1 1.9958 -11.7815 -0.7039 41 1 1.4965 -10.9146 -3.5883 42 1 3.0736 -10.9160 -2.7630 43 1 3.1050 -3.6735 -4.2938 44 1 2.5745 0.8182 -2.4325 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_16737258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:21:02 Heat of formation + Delta-G solvation = -79.478863 kcal Electronic energy + Delta-G solvation = -27855.237997 eV Core-core repulsion = 23740.356528 eV Total energy + Delta-G solvation = -4114.881469 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.84202 -41.64420 -40.07007 -38.59399 -38.04751 -37.67994 -36.54004 -33.65894 -32.62057 -31.79174 -31.73219 -31.08116 -27.58622 -26.80505 -25.72985 -23.95740 -23.76966 -22.55776 -22.05514 -21.20176 -20.85544 -19.49870 -18.89963 -18.69074 -18.19090 -17.91046 -17.74490 -17.53975 -16.73183 -16.47488 -16.03864 -15.87501 -15.53652 -15.46232 -15.32819 -15.04245 -14.83022 -14.40113 -14.10826 -14.02412 -13.77000 -13.63282 -13.19000 -13.13865 -13.09146 -12.97392 -12.79686 -12.53744 -12.23292 -12.11406 -11.95786 -11.73126 -11.61749 -11.57404 -11.48243 -11.38228 -11.07137 -10.68332 -10.60330 -10.05200 -8.91586 -5.03776 -0.80641 0.10671 1.06462 1.18816 1.36657 1.45104 1.47637 1.67280 1.87247 2.65721 3.01216 3.07055 3.23474 3.47710 3.57950 3.65856 3.75521 3.80002 3.83104 3.94918 4.06296 4.07556 4.18442 4.25570 4.33551 4.37668 4.38661 4.41670 4.46381 4.50653 4.51829 4.62059 4.82560 4.84194 4.97577 5.05755 5.09210 5.11884 5.17920 5.20049 5.21185 5.26724 5.35309 5.39172 5.47922 5.67739 5.76193 6.53761 6.60061 6.65658 6.88097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.051 4.051 3 Si 0.750 3.250 4 C 0.046 3.954 5 C -0.142 4.142 6 C -0.052 4.052 7 C -0.104 4.104 8 C -0.102 4.102 9 C 0.514 3.486 10 O -0.537 6.537 11 O -0.342 6.342 12 C 0.069 3.931 13 C -0.081 4.081 14 H 0.087 0.913 15 C -0.111 4.111 16 C -0.145 4.145 17 C 0.099 3.901 18 H 0.059 0.941 19 O -0.590 6.590 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.011 4.011 23 C 0.026 3.974 24 N -0.297 5.297 25 N -0.319 5.319 26 H 0.405 0.595 27 H 0.125 0.875 28 H -0.282 1.282 29 H -0.263 1.263 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.393 0.607 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.138 0.862 44 H 0.457 0.543 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 3.561 6.705 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.161 4.161 3 Si 0.651 3.349 4 C -0.090 4.090 5 C -0.151 4.151 6 C -0.072 4.072 7 C -0.123 4.123 8 C -0.108 4.108 9 C 0.361 3.639 10 O -0.428 6.428 11 O -0.258 6.258 12 C -0.005 4.005 13 C -0.099 4.099 14 H 0.105 0.895 15 C -0.148 4.148 16 C -0.183 4.183 17 C 0.041 3.959 18 H 0.077 0.923 19 O -0.399 6.399 20 C -0.149 4.149 21 C -0.144 4.144 22 C -0.032 4.032 23 C -0.119 4.119 24 N -0.134 5.134 25 N -0.030 5.030 26 H 0.257 0.743 27 H 0.142 0.858 28 H -0.209 1.209 29 H -0.187 1.187 30 H 0.177 0.823 31 H 0.175 0.825 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.156 0.844 44 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 0.168 4.423 4.898 6.602 hybrid contribution -1.854 0.068 0.490 1.919 sum -1.686 4.490 5.389 7.214 Atomic orbital electron populations 1.86570 1.17313 1.80868 1.51664 1.24389 0.84939 1.11903 0.94885 0.94391 0.89964 0.71143 0.79384 1.20858 1.03913 0.92074 0.92149 1.19695 1.05833 0.93467 0.96074 1.20317 0.97655 0.88987 1.00192 1.20874 0.99175 0.98960 0.93283 1.18773 1.06312 0.88476 0.97240 1.21230 0.73909 0.86176 0.82620 1.90852 1.42881 1.87302 1.21753 1.86512 1.75890 1.15792 1.47609 1.23325 1.02098 0.78141 0.96924 1.21216 0.97162 0.92393 0.99155 0.89488 1.21522 0.94147 0.99213 0.99954 1.22203 1.01971 0.94507 0.99577 1.21921 0.95281 0.86721 0.91989 0.92262 1.86478 1.30217 1.55082 1.68106 1.21453 0.93963 0.99227 1.00281 1.21455 1.02317 0.91762 0.98840 1.20227 0.95975 0.87634 0.99342 1.20484 1.04133 0.92023 0.95225 1.73598 1.24645 0.98747 1.16400 1.43555 1.39348 1.10884 1.09247 0.74283 0.85768 1.20861 1.18750 0.82299 0.82506 0.90828 0.91020 0.90780 0.91511 0.90625 0.91519 0.75745 0.91329 0.91582 0.90715 0.90081 0.84377 0.69361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.19 12.86 -148.98 -1.92 0.28 16 2 C -0.05 0.35 3.02 71.23 0.21 0.56 16 3 Si 0.75 -6.82 31.14 68.60 2.14 -4.69 16 4 C 0.05 0.00 6.22 42.17 0.26 0.26 16 5 C -0.14 -0.58 6.38 -20.22 -0.13 -0.70 16 6 C -0.05 -0.03 10.05 22.26 0.22 0.20 16 7 C -0.10 -0.17 9.46 22.29 0.21 0.04 16 8 C -0.10 -0.65 5.86 -20.15 -0.12 -0.77 16 9 C 0.51 4.23 7.88 70.27 0.55 4.78 16 10 O -0.54 -7.46 16.04 19.82 0.32 -7.14 16 11 O -0.34 -1.39 8.92 -56.56 -0.50 -1.90 16 12 C 0.07 0.09 4.85 71.98 0.35 0.44 16 13 C -0.08 0.16 2.43 -10.79 -0.03 0.14 16 14 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 15 C -0.11 0.27 5.10 30.59 0.16 0.42 16 16 C -0.14 0.37 5.55 30.60 0.17 0.54 16 17 C 0.10 -0.06 3.47 30.59 0.11 0.05 16 18 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 19 O -0.59 -1.20 13.32 -148.98 -1.98 -3.19 16 20 C -0.11 0.05 5.58 30.61 0.17 0.22 16 21 C -0.11 0.30 5.21 30.61 0.16 0.46 16 22 C -0.01 -0.09 9.64 22.84 0.22 0.13 16 23 C 0.03 0.22 7.53 42.12 0.32 0.53 16 24 N -0.30 -2.18 12.20 -48.83 -0.60 -2.77 16 25 N -0.32 -0.26 6.26 -46.77 -0.29 -0.56 16 26 H 0.40 -5.14 8.74 -74.06 -0.65 -5.79 16 27 H 0.12 -1.48 7.96 -2.39 -0.02 -1.50 16 28 H -0.28 0.94 7.10 99.48 0.71 1.65 16 29 H -0.26 1.38 7.11 99.48 0.71 2.08 16 30 H 0.16 -0.85 8.06 -2.91 -0.02 -0.87 16 31 H 0.16 -0.39 7.51 -2.91 -0.02 -0.41 16 32 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.07 -0.13 7.82 -2.39 -0.02 -0.15 16 35 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.39 -2.26 9.08 -74.06 -0.67 -2.94 16 39 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.14 1.26 7.57 -2.91 -0.02 1.23 16 44 H 0.46 -2.44 6.87 -219.98 -1.51 -3.96 16 Total: 0.00 -22.81 366.34 -1.74 -24.54 By element: Atomic # 1 Polarization: -10.13 SS G_CDS: -1.74 Total: -11.87 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 2.84 Total: 7.29 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: -0.89 Total: -3.33 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -4.09 Total: -11.95 kcal Atomic # 14 Polarization: -6.82 SS G_CDS: 2.14 Total: -4.69 kcal Total: -22.81 -1.74 -24.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_16737258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.937 kcal (2) G-P(sol) polarization free energy of solvation -22.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds