Wall clock time and date at job start Sat Mar 6 2021 11:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86294 * 109.47161 * 2 1 4 4 C 1.86297 * 109.47104 * 240.00050 * 2 1 3 5 5 C 1.86302 * 109.47008 * 120.00115 * 2 1 3 6 6 O 1.45196 * 109.46909 * 59.99997 * 5 2 1 7 7 C 1.34748 * 117.00112 * 75.00325 * 6 5 2 8 8 O 1.21506 * 120.00259 * 359.97438 * 7 6 5 9 9 C 1.47523 * 119.99920 * 179.97438 * 7 6 5 10 10 C 1.38208 * 119.29395 * 180.02562 * 9 7 6 11 11 C 1.40602 * 119.34714 * 179.97438 * 10 9 7 12 12 N 1.32025 * 135.61918 * 180.02562 * 11 10 9 13 13 N 1.28494 * 110.77220 * 179.97438 * 12 11 10 14 14 C 1.34186 * 112.09600 * 359.97438 * 13 12 11 15 15 C 1.50703 * 126.54825 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.47617 * 255.02891 * 15 14 13 17 17 Si 1.86310 * 109.46700 * 15.02835 * 15 14 13 18 18 H 1.48500 * 109.47325 * 59.99926 * 17 15 14 19 19 H 1.48501 * 109.46741 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46745 * 299.99559 * 17 15 14 21 21 C 1.38140 * 106.91153 * 0.02562 * 14 13 12 22 22 C 1.40910 * 136.20406 * 180.02562 * 21 14 13 23 23 C 1.35354 * 119.76388 * 179.97438 * 22 21 14 24 24 H 1.09000 * 109.47074 * 300.00439 * 1 2 3 25 25 H 1.09004 * 109.47079 * 59.99788 * 1 2 3 26 26 H 1.09000 * 109.47593 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47186 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47462 * 299.99931 * 3 2 1 29 29 H 1.09003 * 109.47436 * 60.00352 * 3 2 1 30 30 H 1.09004 * 109.47392 * 300.00315 * 4 2 1 31 31 H 1.09004 * 109.47020 * 60.00126 * 4 2 1 32 32 H 1.09001 * 109.47646 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46964 * 300.00153 * 5 2 1 34 34 H 1.08996 * 109.46765 * 180.02562 * 5 2 1 35 35 H 1.08002 * 120.33229 * 359.95625 * 10 9 7 36 36 H 0.97004 * 123.95270 * 179.72738 * 13 12 11 37 37 H 1.09002 * 109.47449 * 135.01900 * 15 14 13 38 38 H 0.96693 * 113.99794 * 59.99427 * 16 15 14 39 39 H 1.08006 * 120.11785 * 0.02562 * 22 21 14 40 40 H 1.08005 * 119.23443 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 8 1.9999 -2.2472 1.5211 7 6 2.5965 -3.1069 0.6721 8 8 3.4962 -2.7232 -0.0487 9 6 2.1572 -4.5142 0.6179 10 6 2.7795 -5.3836 -0.2579 11 6 2.3621 -6.7252 -0.3101 12 7 2.7134 -7.7967 -0.9968 13 7 1.9984 -8.8094 -0.6587 14 6 1.1016 -8.4998 0.2903 15 6 0.1029 -9.4358 0.9208 16 8 -1.1994 -9.1652 0.3984 17 14 0.5731 -11.1969 0.5353 18 1 1.9264 -11.4782 1.0781 19 1 -0.4107 -12.1192 1.1571 20 1 0.5785 -11.3969 -0.9362 21 6 1.2679 -7.1590 0.5782 22 6 0.6737 -6.2245 1.4495 23 6 1.1117 -4.9439 1.4614 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.5740 1.7564 0.0005 28 1 2.1207 2.2703 -0.8899 29 1 2.1207 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5212 31 1 2.1206 -0.3643 -2.4111 32 1 3.5740 -0.8779 -1.5214 33 1 2.1206 -0.3644 2.4111 34 1 3.5739 -0.8779 1.5213 35 1 3.5784 -5.0359 -0.8961 36 1 2.0932 -9.6933 -1.0468 37 1 0.0989 -9.2891 2.0009 38 1 -1.2697 -9.2761 -0.5595 39 1 -0.1279 -6.5293 2.1061 40 1 0.6504 -4.2349 2.1330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_4858416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:27:26 Heat of formation + Delta-G solvation = -47.003978 kcal Electronic energy + Delta-G solvation = -23023.452926 eV Core-core repulsion = 19543.294141 eV Total energy + Delta-G solvation = -3480.158784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.85606 -41.52747 -38.56536 -37.95780 -37.34966 -33.54816 -32.49542 -31.00552 -29.65762 -28.48792 -28.33249 -28.29487 -26.93756 -25.82068 -23.94562 -22.23841 -21.28458 -19.59283 -19.07930 -18.25777 -17.87467 -17.51358 -17.40364 -17.08875 -16.14677 -15.71488 -15.47510 -15.12044 -14.96176 -14.57241 -14.48290 -14.06909 -13.93658 -13.77796 -13.61501 -13.39058 -13.28299 -13.25404 -13.15444 -13.02401 -12.89780 -12.60987 -12.46630 -12.26737 -12.05323 -11.64721 -11.50446 -11.39117 -10.82929 -10.74539 -10.58153 -10.37431 -10.02255 -8.90912 -0.78948 0.13072 0.95319 1.20238 1.30805 1.36919 1.47141 1.47472 1.65469 1.67444 1.88502 1.91619 2.09837 2.59087 2.68769 3.04145 3.18163 3.49465 3.69549 3.85122 3.99767 4.09152 4.28227 4.39948 4.44811 4.52865 4.73124 4.76779 4.79907 4.83238 4.83920 4.84415 4.86102 4.90468 5.08324 5.22981 5.27749 5.41467 5.55074 5.63175 5.65879 5.68928 5.76014 6.57124 6.65416 6.70167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.058 2.942 3 C -0.450 4.450 4 C -0.458 4.458 5 C -0.257 4.257 6 O -0.329 6.329 7 C 0.493 3.507 8 O -0.513 6.513 9 C -0.101 4.101 10 C -0.016 4.016 11 C 0.027 3.973 12 N -0.301 5.301 13 N -0.324 5.324 14 C 0.005 3.995 15 C -0.045 4.045 16 O -0.539 6.539 17 Si 0.961 3.039 18 H -0.253 1.253 19 H -0.247 1.247 20 H -0.235 1.235 21 C -0.142 4.142 22 C -0.051 4.051 23 C -0.109 4.109 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.456 0.544 37 H 0.149 0.851 38 H 0.391 0.609 39 H 0.160 0.840 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 -2.911 2.399 5.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.250 2.750 3 C -0.559 4.559 4 C -0.563 4.563 5 C -0.374 4.374 6 O -0.244 6.244 7 C 0.339 3.661 8 O -0.404 6.404 9 C -0.106 4.106 10 C -0.037 4.037 11 C -0.118 4.118 12 N -0.138 5.138 13 N -0.036 5.036 14 C -0.131 4.131 15 C -0.157 4.157 16 O -0.345 6.345 17 Si 0.781 3.219 18 H -0.177 1.177 19 H -0.170 1.170 20 H -0.158 1.158 21 C -0.150 4.150 22 C -0.071 4.071 23 C -0.128 4.128 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.154 0.846 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.305 0.695 37 H 0.167 0.833 38 H 0.241 0.759 39 H 0.178 0.822 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.959 -3.900 1.800 5.215 hybrid contribution 0.194 0.237 -0.388 0.494 sum -2.765 -3.663 1.412 4.802 Atomic orbital electron populations 1.26129 1.20188 1.04544 1.05194 0.78814 0.66837 0.66080 0.63241 1.26070 1.06421 1.17908 1.05494 1.26574 1.06111 1.07019 1.16585 1.28712 1.05251 0.83177 1.20249 1.86459 1.58654 1.21842 1.57429 1.21263 0.80126 0.87157 0.77586 1.90842 1.29781 1.78523 1.41231 1.18834 1.00783 0.89682 1.01346 1.20216 0.98169 0.88689 0.96643 1.20510 0.98955 0.93802 0.98510 1.73589 1.20046 0.95146 1.25000 1.43580 1.22263 1.11649 1.26093 1.22285 0.97934 0.96232 0.96658 1.24744 0.82079 1.05951 1.02932 1.86582 1.26603 1.92503 1.28809 0.85505 0.80887 0.73495 0.81998 1.17703 1.17040 1.15833 1.19699 0.99930 0.93490 1.01882 1.20356 0.98954 0.91029 0.96777 1.20930 0.95841 0.97059 0.99008 0.89943 0.90838 0.91647 0.91201 0.90520 0.89848 0.93229 0.91718 0.92013 0.84618 0.90691 0.84495 0.69470 0.83313 0.75918 0.82234 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.70 8.65 113.37 0.98 1.68 16 2 Si 1.06 -1.84 12.12 68.60 0.83 -1.01 16 3 C -0.45 1.19 8.65 113.37 0.98 2.17 16 4 C -0.46 -2.45 7.10 113.37 0.80 -1.64 16 5 C -0.26 -0.05 5.40 113.37 0.61 0.57 16 6 O -0.33 -1.44 9.07 -56.59 -0.51 -1.95 16 7 C 0.49 3.96 6.65 70.27 0.47 4.42 16 8 O -0.51 -6.11 11.96 19.82 0.24 -5.88 16 9 C -0.10 -0.68 5.86 -20.15 -0.12 -0.79 16 10 C -0.02 -0.14 9.64 22.84 0.22 0.08 16 11 C 0.03 0.21 7.53 42.12 0.32 0.53 16 12 N -0.30 -1.96 12.20 -48.83 -0.60 -2.55 16 13 N -0.32 0.26 6.26 -46.77 -0.29 -0.03 16 14 C 0.00 -0.01 6.19 42.18 0.26 0.25 16 15 C -0.05 0.32 3.03 71.24 0.22 0.54 16 16 O -0.54 3.06 12.88 -148.98 -1.92 1.14 16 17 Si 0.96 -8.32 26.43 68.60 1.81 -6.51 16 18 H -0.25 1.63 7.11 99.48 0.71 2.34 16 19 H -0.25 1.30 7.11 99.48 0.71 2.01 16 20 H -0.24 2.46 7.09 99.48 0.71 3.17 16 21 C -0.14 -0.47 6.38 -20.22 -0.13 -0.60 16 22 C -0.05 -0.04 10.05 22.26 0.22 0.19 16 23 C -0.11 -0.25 9.46 22.29 0.21 -0.04 16 24 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 25 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 26 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 27 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H 0.08 -0.20 7.96 -2.39 -0.02 -0.21 16 29 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H 0.05 0.43 6.28 -2.39 -0.01 0.41 16 31 H 0.06 0.25 7.96 -2.38 -0.02 0.23 16 32 H 0.06 0.50 7.42 -2.39 -0.02 0.48 16 33 H 0.14 -0.71 7.96 -2.39 -0.02 -0.73 16 34 H 0.07 0.13 7.52 -2.39 -0.02 0.12 16 35 H 0.14 1.26 7.57 -2.91 -0.02 1.24 16 36 H 0.46 -3.38 6.87 -219.97 -1.51 -4.89 16 37 H 0.15 -1.43 7.96 -2.39 -0.02 -1.45 16 38 H 0.39 -4.62 8.70 -74.06 -0.64 -5.26 16 39 H 0.16 -0.74 8.06 -2.91 -0.02 -0.76 16 40 H 0.16 -0.24 7.51 -2.91 -0.02 -0.26 16 Total: 0.00 -18.31 338.42 4.28 -14.03 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: -0.33 Total: -4.60 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.05 Total: 7.36 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -0.89 Total: -2.58 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -2.20 Total: -6.69 kcal Atomic # 14 Polarization: -10.16 SS G_CDS: 2.64 Total: -7.52 kcal Total: -18.31 4.28 -14.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_4858416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.975 kcal (2) G-P(sol) polarization free energy of solvation -18.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds