Wall clock time and date at job start Sat Mar 6 2021 09:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 109.46956 * 2 1 4 4 C 1.86298 * 109.47098 * 239.99965 * 2 1 3 5 5 C 1.86803 * 109.46954 * 119.99774 * 2 1 3 6 6 C 1.38237 * 119.99652 * 89.99917 * 5 2 1 7 7 C 1.38231 * 119.99539 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00244 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99908 * 179.97438 * 8 7 6 10 10 O 1.45200 * 109.46919 * 90.00187 * 9 8 7 11 11 C 1.34755 * 117.00193 * 179.97438 * 10 9 8 12 12 O 1.21498 * 119.99517 * 0.02562 * 11 10 9 13 13 C 1.47512 * 120.00088 * 180.02562 * 11 10 9 14 14 C 1.38212 * 119.29568 * 179.80522 * 13 11 10 15 15 C 1.40602 * 119.34721 * 179.76438 * 14 13 11 16 16 N 1.32034 * 135.62083 * 180.12776 * 15 14 13 17 17 N 1.28491 * 110.77225 * 180.29302 * 16 15 14 18 18 C 1.34191 * 112.09808 * 0.02562 * 17 16 15 19 19 C 1.50692 * 126.54597 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47347 * 255.01963 * 19 18 17 21 21 Si 1.86300 * 109.47196 * 15.02568 * 19 18 17 22 22 H 1.48501 * 109.47127 * 60.00083 * 21 19 18 23 23 H 1.48501 * 109.47000 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46899 * 299.99627 * 21 19 18 25 25 C 1.38148 * 106.90576 * 359.97438 * 18 17 16 26 26 C 1.40915 * 136.19428 * 180.02562 * 25 18 17 27 27 C 1.35350 * 119.76130 * 180.02562 * 26 25 18 28 28 C 1.38232 * 120.00106 * 0.25334 * 8 7 6 29 29 C 1.38230 * 119.99799 * 270.02140 * 5 2 1 30 30 H 1.09008 * 109.47240 * 300.00120 * 1 2 3 31 31 H 1.09000 * 109.47247 * 59.99953 * 1 2 3 32 32 H 1.09001 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46893 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47181 * 300.00088 * 3 2 1 35 35 H 1.08994 * 109.47365 * 60.00012 * 3 2 1 36 36 H 1.09001 * 109.46920 * 300.00207 * 4 2 1 37 37 H 1.09000 * 109.47005 * 59.99934 * 4 2 1 38 38 H 1.09005 * 109.47016 * 180.02562 * 4 2 1 39 39 H 1.07997 * 120.00272 * 0.02562 * 6 5 2 40 40 H 1.08003 * 119.99845 * 179.97438 * 7 6 5 41 41 H 1.08997 * 109.47541 * 330.00558 * 9 8 7 42 42 H 1.08994 * 109.47074 * 210.00124 * 9 8 7 43 43 H 1.07998 * 120.32679 * 359.94327 * 14 13 11 44 44 H 0.97005 * 123.94863 * 179.97438 * 17 16 15 45 45 H 1.09003 * 109.47159 * 135.02402 * 19 18 17 46 46 H 0.96706 * 113.99808 * 60.00426 * 20 19 18 47 47 H 1.08006 * 120.11419 * 0.02667 * 26 25 18 48 48 H 1.08000 * 119.23585 * 180.02562 * 27 26 25 49 49 H 1.07996 * 119.99904 * 179.72020 * 28 8 7 50 50 H 1.07999 * 120.00591 * 0.02562 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8805 1.5253 6 6 2.7160 -2.2432 1.4910 7 6 3.1762 -2.8948 2.6199 8 6 3.4066 -2.1839 3.7828 9 6 3.9078 -2.8945 5.0136 10 8 5.3598 -2.8956 5.0143 11 6 5.9707 -3.4957 6.0547 12 8 5.3081 -4.0046 6.9369 13 6 7.4437 -3.5349 6.1226 14 6 8.0551 -4.1507 7.1983 15 6 9.4590 -4.1930 7.2616 16 7 10.3515 -4.6796 8.1042 17 7 11.5449 -4.4415 7.6918 18 6 11.5530 -3.7700 6.5301 19 6 12.7690 -3.3243 5.7597 20 8 12.9473 -1.9161 5.9241 21 14 14.2721 -4.2196 6.3996 22 1 14.0868 -5.6831 6.2286 23 1 15.4703 -3.7808 5.6400 24 1 14.4574 -3.9090 7.8399 25 6 10.2336 -3.5653 6.1752 26 6 9.5516 -2.9487 5.1072 27 6 8.1983 -2.9388 5.0907 28 6 3.1718 -0.8221 3.8184 29 6 2.7156 -0.1696 2.6883 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1206 2.2703 0.8899 36 1 2.1206 -1.9059 -1.5211 37 1 2.1206 -0.3644 -2.4111 38 1 3.5740 -0.8786 -1.5209 39 1 2.5364 -2.7985 0.5824 40 1 3.3558 -3.9595 2.5933 41 1 3.5438 -3.9219 5.0137 42 1 3.5444 -2.3803 5.9033 43 1 7.4602 -4.5975 7.9812 44 1 12.3463 -4.7145 8.1654 45 1 12.6330 -3.5522 4.7024 46 1 13.0744 -1.6403 6.8422 47 1 10.1070 -2.4858 4.3048 48 1 7.6843 -2.4642 4.2679 49 1 3.3475 -0.2675 4.7283 50 1 2.5349 0.8948 2.7152 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_7964246_9435856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:07:21 Heat of formation + Delta-G solvation = -39.873406 kcal Electronic energy + Delta-G solvation = -31079.982446 eV Core-core repulsion = 26776.153066 eV Total energy + Delta-G solvation = -4303.829380 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 384.146 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.82116 -41.42306 -39.97675 -38.48552 -38.13606 -37.25843 -33.52538 -33.12328 -32.21637 -31.86831 -30.98475 -29.58324 -28.43906 -28.40811 -27.83446 -27.00116 -25.89754 -23.91092 -23.46252 -22.40309 -21.92695 -21.25829 -19.57200 -19.10008 -18.35291 -17.98784 -17.62574 -17.38428 -17.22675 -16.99553 -16.21794 -15.91927 -15.83972 -15.80324 -15.42621 -15.01939 -14.98191 -14.48279 -14.36672 -14.19544 -14.15128 -14.04570 -13.92454 -13.80574 -13.62009 -13.39561 -13.30518 -13.25746 -13.24648 -13.09608 -12.97775 -12.77383 -12.62550 -12.51925 -12.25928 -12.02622 -11.55032 -11.54578 -11.46159 -11.33430 -11.03067 -10.90144 -10.82218 -10.77827 -9.96596 -9.76329 -9.67274 -8.84974 -0.69996 0.15243 0.18277 0.56411 0.68481 0.98845 1.12086 1.30585 1.43979 1.60515 1.64980 1.70411 1.75489 1.85352 2.02857 2.54758 2.77611 2.95026 3.01133 3.17639 3.25969 3.63434 3.82179 3.85854 3.91617 3.98846 4.12757 4.14397 4.28287 4.29761 4.35391 4.44098 4.52414 4.56108 4.68546 4.70770 4.72154 4.76115 4.76196 4.77188 4.78131 4.91456 5.01807 5.16128 5.17223 5.28708 5.36155 5.41951 5.45857 5.50910 5.52242 5.54392 5.63427 5.64540 5.66285 5.72649 6.12637 6.21087 6.69727 6.82028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.090 4.090 9 C 0.109 3.891 10 O -0.344 6.344 11 C 0.511 3.489 12 O -0.504 6.504 13 C -0.100 4.100 14 C 0.007 3.993 15 C 0.045 3.955 16 N -0.269 5.269 17 N -0.333 5.333 18 C -0.017 4.017 19 C -0.045 4.045 20 O -0.527 6.527 21 Si 0.921 3.079 22 H -0.240 1.240 23 H -0.228 1.228 24 H -0.246 1.246 25 C -0.118 4.118 26 C -0.060 4.060 27 C -0.097 4.097 28 C -0.105 4.105 29 C -0.092 4.092 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.148 0.852 44 H 0.444 0.556 45 H 0.137 0.863 46 H 0.378 0.622 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.121 0.879 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 1.530 -3.034 4.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.402 4.402 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.090 4.090 9 C 0.036 3.964 10 O -0.261 6.261 11 C 0.356 3.644 12 O -0.393 6.393 13 C -0.105 4.105 14 C -0.014 4.014 15 C -0.101 4.101 16 N -0.106 5.106 17 N -0.044 5.044 18 C -0.151 4.151 19 C -0.157 4.157 20 O -0.331 6.331 21 Si 0.741 3.259 22 H -0.163 1.163 23 H -0.150 1.150 24 H -0.169 1.169 25 C -0.126 4.126 26 C -0.081 4.081 27 C -0.116 4.116 28 C -0.123 4.123 29 C -0.109 4.109 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.166 0.834 44 H 0.291 0.709 45 H 0.154 0.846 46 H 0.226 0.774 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.139 0.861 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.967 0.316 -2.027 4.466 hybrid contribution -0.080 0.276 0.334 0.441 sum 3.887 0.592 -1.693 4.280 Atomic orbital electron populations 1.26128 1.20458 1.04592 1.04504 0.78185 0.66847 0.66137 0.63703 1.26135 1.06508 1.18535 1.04569 1.26135 1.06504 1.08049 1.15055 1.27478 1.02987 0.99527 1.10221 1.21077 0.97515 0.94656 0.97713 1.21163 0.98705 0.99928 0.92535 1.19478 1.00960 0.94203 0.94366 1.21886 0.76377 1.01377 0.96758 1.86617 1.23058 1.71133 1.45245 1.21059 0.88936 0.75030 0.79350 1.90872 1.66674 1.43313 1.38468 1.18708 0.89083 1.05007 0.97719 1.20237 0.89867 0.94726 0.96589 1.20355 0.94120 1.01895 0.93690 1.73647 0.89223 1.23646 1.24059 1.43503 1.07829 1.37124 1.15909 1.21874 0.97533 1.04149 0.91527 1.24492 0.99024 0.87835 1.04393 1.86609 1.94485 1.19655 1.32340 0.86074 0.78498 0.80226 0.81136 1.16296 1.14976 1.16939 1.19368 0.90937 1.04091 0.98245 1.20063 0.93484 0.98051 0.96458 1.20755 0.93568 0.99182 0.98128 1.21167 0.98705 0.93534 0.98921 1.21079 0.97517 0.99756 0.92597 0.91162 0.91025 0.91162 0.91008 0.90954 0.91165 0.91167 0.90953 0.91010 0.85871 0.86055 0.90034 0.90033 0.83424 0.70944 0.84577 0.77420 0.84630 0.84179 0.86051 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.69 8.65 101.05 0.87 1.57 16 2 Si 1.06 -2.73 12.32 -169.99 -2.09 -4.82 16 3 C -0.45 0.84 8.53 101.05 0.86 1.70 16 4 C -0.45 0.84 8.53 101.05 0.86 1.70 16 5 C -0.36 0.08 4.59 -39.58 -0.18 -0.11 16 6 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 7 C -0.11 -0.12 9.70 -39.58 -0.38 -0.51 16 8 C -0.09 -0.15 5.52 -104.62 -0.58 -0.73 16 9 C 0.11 0.20 5.60 36.01 0.20 0.40 16 10 O -0.34 -1.01 9.36 -40.64 -0.38 -1.39 16 11 C 0.51 1.99 7.88 34.51 0.27 2.26 16 12 O -0.50 -3.11 16.04 -19.26 -0.31 -3.42 16 13 C -0.10 -0.28 5.86 -105.06 -0.62 -0.90 16 14 C 0.01 0.02 9.64 -38.70 -0.37 -0.35 16 15 C 0.05 0.14 7.53 -83.14 -0.63 -0.48 16 16 N -0.27 -0.71 12.20 33.21 0.41 -0.31 16 17 N -0.33 0.14 6.26 33.86 0.21 0.35 16 18 C -0.02 0.01 6.19 -81.60 -0.51 -0.50 16 19 C -0.04 0.13 3.02 36.00 0.11 0.24 16 20 O -0.53 1.07 12.88 -35.23 -0.45 0.62 16 21 Si 0.92 -3.41 26.43 -169.99 -4.49 -7.91 16 22 H -0.24 0.67 7.11 56.52 0.40 1.07 16 23 H -0.23 0.51 7.11 56.52 0.40 0.91 16 24 H -0.25 1.05 7.09 56.52 0.40 1.45 16 25 C -0.12 -0.20 6.38 -105.16 -0.67 -0.87 16 26 C -0.06 -0.05 10.05 -39.60 -0.40 -0.44 16 27 C -0.10 -0.13 9.46 -39.55 -0.37 -0.50 16 28 C -0.11 -0.12 9.70 -39.58 -0.38 -0.51 16 29 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 30 H 0.07 -0.09 7.96 -51.92 -0.41 -0.50 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 36 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 38 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 39 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 40 H 0.12 -0.01 8.06 -52.48 -0.42 -0.44 16 41 H 0.08 0.11 8.08 -51.93 -0.42 -0.31 16 42 H 0.08 0.12 8.08 -51.93 -0.42 -0.30 16 43 H 0.15 0.42 7.57 -52.49 -0.40 0.03 16 44 H 0.44 -1.56 6.87 -190.42 -1.31 -2.87 16 45 H 0.14 -0.53 7.96 -51.93 -0.41 -0.94 16 46 H 0.38 -1.94 8.70 45.56 0.40 -1.55 16 47 H 0.14 -0.17 8.06 -52.48 -0.42 -0.59 16 48 H 0.14 0.02 7.51 -52.49 -0.39 -0.38 16 49 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 50 H 0.12 -0.20 7.43 -52.49 -0.39 -0.59 16 LS Contribution 427.15 15.07 6.44 6.44 Total: 0.00 -8.73 427.15 -10.81 -19.55 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -7.49 Total: -10.30 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.65 Total: 1.19 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: 0.62 Total: 0.05 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -1.14 Total: -4.19 kcal Atomic # 14 Polarization: -6.14 SS G_CDS: -6.59 Total: -12.73 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -8.73 -10.81 -19.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_9435856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.324 kcal (2) G-P(sol) polarization free energy of solvation -8.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds