Wall clock time and date at job start Sat Mar 6 2021 09:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 109.46956 * 2 1 4 4 C 1.86298 * 109.47098 * 239.99965 * 2 1 3 5 5 C 1.86803 * 109.46954 * 119.99774 * 2 1 3 6 6 C 1.38237 * 119.99652 * 89.99917 * 5 2 1 7 7 C 1.38231 * 119.99539 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00244 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99908 * 179.97438 * 8 7 6 10 10 O 1.45200 * 109.46919 * 90.00187 * 9 8 7 11 11 C 1.34755 * 117.00193 * 179.97438 * 10 9 8 12 12 O 1.21498 * 119.99517 * 0.02562 * 11 10 9 13 13 C 1.47512 * 120.00088 * 180.02562 * 11 10 9 14 14 C 1.38212 * 119.29568 * 179.80522 * 13 11 10 15 15 C 1.40602 * 119.34721 * 179.76438 * 14 13 11 16 16 N 1.32034 * 135.62083 * 180.12776 * 15 14 13 17 17 N 1.28491 * 110.77225 * 180.29302 * 16 15 14 18 18 C 1.34191 * 112.09808 * 0.02562 * 17 16 15 19 19 C 1.50692 * 126.54597 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47347 * 255.01963 * 19 18 17 21 21 Si 1.86300 * 109.47196 * 15.02568 * 19 18 17 22 22 H 1.48501 * 109.47127 * 60.00083 * 21 19 18 23 23 H 1.48501 * 109.47000 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46899 * 299.99627 * 21 19 18 25 25 C 1.38148 * 106.90576 * 359.97438 * 18 17 16 26 26 C 1.40915 * 136.19428 * 180.02562 * 25 18 17 27 27 C 1.35350 * 119.76130 * 180.02562 * 26 25 18 28 28 C 1.38232 * 120.00106 * 0.25334 * 8 7 6 29 29 C 1.38230 * 119.99799 * 270.02140 * 5 2 1 30 30 H 1.09008 * 109.47240 * 300.00120 * 1 2 3 31 31 H 1.09000 * 109.47247 * 59.99953 * 1 2 3 32 32 H 1.09001 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46893 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47181 * 300.00088 * 3 2 1 35 35 H 1.08994 * 109.47365 * 60.00012 * 3 2 1 36 36 H 1.09001 * 109.46920 * 300.00207 * 4 2 1 37 37 H 1.09000 * 109.47005 * 59.99934 * 4 2 1 38 38 H 1.09005 * 109.47016 * 180.02562 * 4 2 1 39 39 H 1.07997 * 120.00272 * 0.02562 * 6 5 2 40 40 H 1.08003 * 119.99845 * 179.97438 * 7 6 5 41 41 H 1.08997 * 109.47541 * 330.00558 * 9 8 7 42 42 H 1.08994 * 109.47074 * 210.00124 * 9 8 7 43 43 H 1.07998 * 120.32679 * 359.94327 * 14 13 11 44 44 H 0.97005 * 123.94863 * 179.97438 * 17 16 15 45 45 H 1.09003 * 109.47159 * 135.02402 * 19 18 17 46 46 H 0.96706 * 113.99808 * 60.00426 * 20 19 18 47 47 H 1.08006 * 120.11419 * 0.02667 * 26 25 18 48 48 H 1.08000 * 119.23585 * 180.02562 * 27 26 25 49 49 H 1.07996 * 119.99904 * 179.72020 * 28 8 7 50 50 H 1.07999 * 120.00591 * 0.02562 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8805 1.5253 6 6 2.7160 -2.2432 1.4910 7 6 3.1762 -2.8948 2.6199 8 6 3.4066 -2.1839 3.7828 9 6 3.9078 -2.8945 5.0136 10 8 5.3598 -2.8956 5.0143 11 6 5.9707 -3.4957 6.0547 12 8 5.3081 -4.0046 6.9369 13 6 7.4437 -3.5349 6.1226 14 6 8.0551 -4.1507 7.1983 15 6 9.4590 -4.1930 7.2616 16 7 10.3515 -4.6796 8.1042 17 7 11.5449 -4.4415 7.6918 18 6 11.5530 -3.7700 6.5301 19 6 12.7690 -3.3243 5.7597 20 8 12.9473 -1.9161 5.9241 21 14 14.2721 -4.2196 6.3996 22 1 14.0868 -5.6831 6.2286 23 1 15.4703 -3.7808 5.6400 24 1 14.4574 -3.9090 7.8399 25 6 10.2336 -3.5653 6.1752 26 6 9.5516 -2.9487 5.1072 27 6 8.1983 -2.9388 5.0907 28 6 3.1718 -0.8221 3.8184 29 6 2.7156 -0.1696 2.6883 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1206 2.2703 0.8899 36 1 2.1206 -1.9059 -1.5211 37 1 2.1206 -0.3644 -2.4111 38 1 3.5740 -0.8786 -1.5209 39 1 2.5364 -2.7985 0.5824 40 1 3.3558 -3.9595 2.5933 41 1 3.5438 -3.9219 5.0137 42 1 3.5444 -2.3803 5.9033 43 1 7.4602 -4.5975 7.9812 44 1 12.3463 -4.7145 8.1654 45 1 12.6330 -3.5522 4.7024 46 1 13.0744 -1.6403 6.8422 47 1 10.1070 -2.4858 4.3048 48 1 7.6843 -2.4642 4.2679 49 1 3.3475 -0.2675 4.7283 50 1 2.5349 0.8948 2.7152 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_7964246_9435856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:07:19 Heat of formation + Delta-G solvation = -32.844535 kcal Electronic energy + Delta-G solvation = -31079.677651 eV Core-core repulsion = 26776.153066 eV Total energy + Delta-G solvation = -4303.524585 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 384.146 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.87943 -41.69366 -40.02029 -38.58886 -37.96741 -37.54581 -33.57528 -33.20805 -32.30909 -31.87208 -31.03677 -29.42407 -28.26080 -28.24430 -27.94467 -26.93742 -25.99586 -23.99944 -23.47250 -22.55187 -22.02879 -21.31512 -19.65869 -19.15410 -18.41428 -18.03929 -17.68804 -17.61017 -17.24086 -17.01663 -16.17576 -15.97199 -15.82415 -15.71563 -15.53362 -15.05521 -14.90192 -14.49207 -14.37353 -14.18457 -14.13246 -14.02372 -13.84627 -13.69372 -13.65414 -13.39650 -13.26412 -13.12859 -13.12039 -13.07949 -12.93416 -12.70583 -12.59452 -12.27087 -12.08484 -12.06609 -11.83848 -11.72389 -11.53913 -11.41837 -10.89743 -10.76372 -10.72620 -10.58972 -10.08249 -9.79275 -9.68699 -8.93784 -0.83967 0.08226 0.10917 0.53580 0.94604 1.16851 1.30291 1.36562 1.44049 1.49338 1.68157 1.86367 1.88426 2.05792 2.15410 2.63445 2.69284 2.91309 3.03731 3.16071 3.48475 3.50190 3.73549 3.78309 3.81291 3.96243 4.05483 4.11708 4.22958 4.24709 4.36289 4.43991 4.51650 4.55132 4.72210 4.80288 4.87376 4.87606 4.91812 4.92783 4.93144 4.93709 4.99731 5.03453 5.16620 5.17534 5.19195 5.36262 5.42409 5.58099 5.60693 5.62273 5.64799 5.70794 5.74126 5.74176 6.12924 6.53211 6.56453 6.63645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.104 4.104 9 C 0.108 3.892 10 O -0.342 6.342 11 C 0.514 3.486 12 O -0.534 6.534 13 C -0.102 4.102 14 C -0.009 4.009 15 C 0.027 3.973 16 N -0.297 5.297 17 N -0.322 5.322 18 C 0.006 3.994 19 C -0.046 4.046 20 O -0.540 6.540 21 Si 0.960 3.040 22 H -0.252 1.252 23 H -0.247 1.247 24 H -0.234 1.234 25 C -0.139 4.139 26 C -0.049 4.049 27 C -0.107 4.107 28 C -0.119 4.119 29 C -0.101 4.101 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.142 0.858 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.139 0.861 44 H 0.457 0.543 45 H 0.149 0.851 46 H 0.391 0.609 47 H 0.160 0.840 48 H 0.151 0.849 49 H 0.127 0.873 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 2.392 -4.358 6.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.410 4.410 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.104 4.104 9 C 0.035 3.965 10 O -0.259 6.259 11 C 0.360 3.640 12 O -0.425 6.425 13 C -0.108 4.108 14 C -0.030 4.030 15 C -0.118 4.118 16 N -0.135 5.135 17 N -0.034 5.034 18 C -0.130 4.130 19 C -0.157 4.157 20 O -0.345 6.345 21 Si 0.779 3.221 22 H -0.176 1.176 23 H -0.170 1.170 24 H -0.157 1.157 25 C -0.148 4.148 26 C -0.069 4.069 27 C -0.126 4.126 28 C -0.137 4.137 29 C -0.119 4.119 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.157 0.843 44 H 0.306 0.694 45 H 0.167 0.833 46 H 0.241 0.759 47 H 0.178 0.822 48 H 0.169 0.831 49 H 0.145 0.855 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.115 1.180 -3.319 6.210 hybrid contribution -0.375 0.036 0.709 0.803 sum 4.739 1.216 -2.610 5.545 Atomic orbital electron populations 1.26301 1.21686 1.04452 1.04561 0.77156 0.65089 0.64648 0.61579 1.26277 1.06479 1.19332 1.04867 1.26275 1.06482 1.08480 1.15704 1.28093 1.02123 0.99602 1.11201 1.21393 0.97217 0.95191 0.98106 1.21374 0.99050 1.00473 0.92809 1.19532 1.01861 0.94621 0.94422 1.21967 0.75759 1.01564 0.97216 1.86618 1.23782 1.70714 1.44740 1.21303 0.89393 0.74321 0.78972 1.90847 1.67382 1.44752 1.39563 1.18751 0.88479 1.05320 0.98226 1.20211 0.90286 0.95696 0.96852 1.20476 0.94229 1.02537 0.94601 1.73597 0.90111 1.24939 1.24812 1.43591 1.07635 1.36320 1.15892 1.22284 0.97681 1.02196 0.90863 1.24747 0.98215 0.87790 1.04982 1.86586 1.94357 1.19793 1.33774 0.85531 0.76529 0.78775 0.81255 1.17599 1.16993 1.15725 1.19678 0.91749 1.04907 0.98442 1.20330 0.93290 0.96843 0.96469 1.20844 0.93932 0.99706 0.98104 1.21375 0.99072 0.93552 0.99727 1.21393 0.97239 1.00809 0.92474 0.91435 0.90664 0.91423 0.91217 0.90657 0.90927 0.90910 0.90656 0.91207 0.84063 0.85440 0.90002 0.90027 0.84348 0.69382 0.83313 0.75898 0.82248 0.83133 0.85467 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.72 8.65 113.37 0.98 2.70 16 2 Si 1.13 -6.76 12.32 68.60 0.85 -5.92 16 3 C -0.46 2.13 8.53 113.37 0.97 3.10 16 4 C -0.46 2.16 8.53 113.37 0.97 3.13 16 5 C -0.37 0.27 4.59 22.27 0.10 0.37 16 6 C -0.10 -0.06 9.29 22.27 0.21 0.15 16 7 C -0.12 -0.37 9.70 22.27 0.22 -0.15 16 8 C -0.10 -0.47 5.52 -19.87 -0.11 -0.58 16 9 C 0.11 0.59 5.60 71.24 0.40 0.99 16 10 O -0.34 -2.59 9.36 -56.66 -0.53 -3.12 16 11 C 0.51 5.12 7.88 70.27 0.55 5.68 16 12 O -0.53 -8.04 16.04 19.84 0.32 -7.72 16 13 C -0.10 -0.76 5.86 -20.15 -0.12 -0.88 16 14 C -0.01 -0.08 9.64 22.84 0.22 0.14 16 15 C 0.03 0.20 7.53 42.12 0.32 0.52 16 16 N -0.30 -1.84 12.20 -48.83 -0.60 -2.44 16 17 N -0.32 0.36 6.26 -46.77 -0.29 0.06 16 18 C 0.01 -0.01 6.19 42.17 0.26 0.25 16 19 C -0.05 0.33 3.02 71.23 0.22 0.54 16 20 O -0.54 3.05 12.88 -148.98 -1.92 1.13 16 21 Si 0.96 -8.39 26.43 68.60 1.81 -6.57 16 22 H -0.25 1.67 7.11 99.48 0.71 2.37 16 23 H -0.25 1.31 7.11 99.48 0.71 2.02 16 24 H -0.23 2.49 7.09 99.48 0.71 3.20 16 25 C -0.14 -0.46 6.38 -20.22 -0.13 -0.59 16 26 C -0.05 -0.06 10.05 22.26 0.22 0.17 16 27 C -0.11 -0.34 9.46 22.29 0.21 -0.13 16 28 C -0.12 -0.38 9.70 22.27 0.22 -0.16 16 29 C -0.10 -0.07 9.29 22.27 0.21 0.14 16 30 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 33 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 34 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 35 H 0.07 -0.36 7.69 -2.39 -0.02 -0.38 16 36 H 0.07 -0.36 7.69 -2.39 -0.02 -0.38 16 37 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 38 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 39 H 0.14 -0.54 7.43 -2.91 -0.02 -0.56 16 40 H 0.13 0.10 8.06 -2.91 -0.02 0.08 16 41 H 0.08 0.40 8.08 -2.39 -0.02 0.39 16 42 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 43 H 0.14 1.28 7.57 -2.91 -0.02 1.26 16 44 H 0.46 -3.55 6.87 -219.97 -1.51 -5.06 16 45 H 0.15 -1.43 7.96 -2.39 -0.02 -1.45 16 46 H 0.39 -4.64 8.70 -74.05 -0.64 -5.28 16 47 H 0.16 -0.65 8.06 -2.91 -0.02 -0.67 16 48 H 0.15 0.08 7.51 -2.91 -0.02 0.06 16 49 H 0.13 0.12 8.06 -2.91 -0.02 0.09 16 50 H 0.14 -0.53 7.43 -2.91 -0.02 -0.55 16 Total: 0.00 -20.96 427.15 5.13 -15.84 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: -0.42 Total: -6.64 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.91 Total: 15.38 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -0.89 Total: -2.37 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -2.13 Total: -9.71 kcal Atomic # 14 Polarization: -15.15 SS G_CDS: 2.66 Total: -12.49 kcal Total: -20.96 5.13 -15.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_7964246_9435856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.007 kcal (2) G-P(sol) polarization free energy of solvation -20.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds