Wall clock time and date at job start Sat Mar 6 2021 11:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86303 * 109.47134 * 2 1 4 4 C 1.86306 * 109.46883 * 240.00215 * 2 1 3 5 5 C 1.86292 * 109.47129 * 120.00105 * 2 1 3 6 6 O 1.45201 * 109.46940 * 60.00264 * 5 2 1 7 7 C 1.34709 * 117.00536 * 74.99682 * 6 5 2 8 8 O 1.21476 * 119.99884 * 0.02562 * 7 6 5 9 9 C 1.47735 * 120.00261 * 179.97438 * 7 6 5 10 10 C 1.39607 * 120.13995 * 359.97438 * 9 7 6 11 11 C 1.37974 * 119.86819 * 179.71975 * 10 9 7 12 12 C 1.38323 * 120.16734 * 0.57935 * 11 10 9 13 13 C 1.50697 * 119.85633 * 179.72204 * 12 11 10 14 14 O 1.42906 * 109.46831 * 254.72541 * 13 12 11 15 15 Si 1.86300 * 109.47007 * 14.71930 * 13 12 11 16 16 H 1.48503 * 109.46942 * 60.00611 * 15 13 12 17 17 H 1.48503 * 109.47276 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47372 * 300.00074 * 15 13 12 19 19 C 1.38499 * 120.28740 * 359.44046 * 12 11 10 20 20 Cl 1.73602 * 119.93580 * 180.27921 * 19 12 11 21 21 C 1.38044 * 120.12320 * 0.25746 * 19 12 11 22 22 H 1.09001 * 109.46859 * 299.99744 * 1 2 3 23 23 H 1.09007 * 109.47074 * 59.99629 * 1 2 3 24 24 H 1.08997 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46716 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47352 * 300.00044 * 3 2 1 27 27 H 1.09001 * 109.47039 * 60.00365 * 3 2 1 28 28 H 1.09001 * 109.46961 * 300.00157 * 4 2 1 29 29 H 1.09007 * 109.47138 * 60.00195 * 4 2 1 30 30 H 1.09002 * 109.46751 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47391 * 300.00186 * 5 2 1 32 32 H 1.09004 * 109.47326 * 179.97438 * 5 2 1 33 33 H 1.08003 * 120.06554 * 0.04279 * 10 9 7 34 34 H 1.08001 * 119.91392 * 180.28791 * 11 10 9 35 35 H 1.09000 * 109.47374 * 134.72114 * 13 12 11 36 36 H 0.96693 * 114.00047 * 60.00191 * 14 13 12 37 37 H 1.08001 * 120.07887 * 179.97438 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5210 6 8 2.0000 -2.2472 1.5210 7 6 2.5963 -3.1067 0.6722 8 8 3.4963 -2.7232 -0.0479 9 6 2.1564 -4.5160 0.6179 10 6 1.1234 -4.9603 1.4453 11 6 0.7132 -6.2763 1.3858 12 6 1.3308 -7.1584 0.5175 13 6 0.8813 -8.5957 0.4627 14 8 1.8453 -9.4215 1.1192 15 14 -0.7655 -8.7643 1.3174 16 1 -1.7673 -7.9061 0.6353 17 1 -1.2083 -10.1808 1.2640 18 1 -0.6335 -8.3405 2.7345 19 6 2.3565 -6.7249 -0.3060 20 17 3.1203 -7.8380 -1.3975 21 6 2.7723 -5.4094 -0.2608 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.5741 1.7564 -0.0005 26 1 2.1207 2.2703 -0.8899 27 1 2.1208 2.2703 0.8900 28 1 2.1206 -1.9059 -1.5213 29 1 2.1206 -0.3643 -2.4113 30 1 3.5740 -0.8778 -1.5214 31 1 2.1207 -0.3645 2.4110 32 1 3.5740 -0.8786 1.5209 33 1 0.6429 -4.2740 2.1268 34 1 -0.0890 -6.6197 2.0222 35 1 0.7843 -8.9068 -0.5774 36 1 1.9831 -9.2009 2.0504 37 1 3.5725 -5.0722 -0.9030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_8687484_4858416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:16:02 Heat of formation + Delta-G solvation = -121.272485 kcal Electronic energy + Delta-G solvation = -20419.034314 eV Core-core repulsion = 17118.696935 eV Total energy + Delta-G solvation = -3300.337379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 302.070 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81490 -40.48589 -37.75923 -37.56632 -37.37176 -33.22126 -32.11693 -29.70434 -28.67485 -28.38866 -28.35752 -26.99231 -24.13684 -23.84339 -21.90251 -19.38419 -18.70942 -17.95829 -17.50437 -17.07707 -16.60409 -16.32861 -15.89404 -15.35958 -15.01978 -14.74139 -14.61434 -14.31880 -14.04602 -13.96482 -13.79289 -13.78401 -13.41705 -13.25376 -13.08606 -13.04313 -12.86851 -12.71640 -12.49390 -12.39572 -12.12513 -12.02164 -11.65388 -11.59893 -10.86051 -10.77831 -10.47642 -10.44752 -10.29039 -9.96935 -0.68374 -0.06822 0.92224 1.11514 1.23049 1.46143 1.48607 1.56532 1.58226 1.88099 1.94955 2.04436 2.38898 2.56102 3.30706 3.48657 3.57999 3.69341 3.91424 3.99119 4.21950 4.25423 4.46648 4.54763 4.69686 4.73389 4.77095 4.80446 4.81731 4.82024 4.83303 4.87793 4.93387 5.00497 5.23357 5.39275 5.52578 5.60486 5.62772 6.60565 6.69689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.058 2.942 3 C -0.453 4.453 4 C -0.459 4.459 5 C -0.255 4.255 6 O -0.328 6.328 7 C 0.492 3.508 8 O -0.509 6.509 9 C -0.121 4.121 10 C -0.045 4.045 11 C -0.123 4.123 12 C -0.076 4.076 13 C -0.096 4.096 14 O -0.542 6.542 15 Si 0.987 3.013 16 H -0.250 1.250 17 H -0.274 1.274 18 H -0.229 1.229 19 C -0.036 4.036 20 Cl -0.055 7.055 21 C -0.057 4.057 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.117 0.883 36 H 0.391 0.609 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 2.134 4.266 6.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.250 2.750 3 C -0.561 4.561 4 C -0.564 4.564 5 C -0.372 4.372 6 O -0.244 6.244 7 C 0.337 3.663 8 O -0.399 6.399 9 C -0.122 4.122 10 C -0.063 4.063 11 C -0.140 4.140 12 C -0.078 4.078 13 C -0.205 4.205 14 O -0.349 6.349 15 Si 0.808 3.192 16 H -0.174 1.174 17 H -0.199 1.199 18 H -0.152 1.152 19 C -0.062 4.062 20 Cl -0.026 7.026 21 C -0.076 4.076 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.094 0.906 33 H 0.190 0.810 34 H 0.184 0.816 35 H 0.135 0.865 36 H 0.240 0.760 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.863 1.799 3.823 6.442 hybrid contribution 1.154 0.181 -0.290 1.204 sum -3.709 1.981 3.533 5.492 Atomic orbital electron populations 1.26129 1.20083 1.04632 1.05228 0.78823 0.66882 0.66060 0.63252 1.26094 1.06429 1.18079 1.05486 1.26584 1.06123 1.07070 1.16614 1.28710 1.05313 0.82929 1.20256 1.86431 1.58662 1.21942 1.57324 1.21215 0.80264 0.87039 0.77746 1.90857 1.29578 1.78410 1.41090 1.19075 1.01171 0.90149 1.01814 1.21821 0.92618 0.96357 0.95461 1.21400 1.00906 0.92905 0.98822 1.20753 0.94225 0.98096 0.94702 1.25341 1.03997 0.86170 1.04970 1.86574 1.62019 1.56846 1.29458 0.85173 0.73431 0.80158 0.80437 1.17380 1.19932 1.15202 1.20674 0.97839 0.90820 0.96914 1.98407 1.80389 1.61733 1.62021 1.21170 0.98692 0.90857 0.96897 0.89923 0.90879 0.91481 0.91232 0.90579 0.89854 0.93093 0.91719 0.92026 0.84448 0.90608 0.80987 0.81554 0.86471 0.76012 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.62 8.65 113.37 0.98 2.60 16 2 Si 1.06 -3.88 12.12 68.60 0.83 -3.05 16 3 C -0.45 1.79 8.65 113.37 0.98 2.77 16 4 C -0.46 -1.56 7.10 113.37 0.80 -0.76 16 5 C -0.25 0.59 5.40 113.37 0.61 1.20 16 6 O -0.33 -0.32 9.17 -56.19 -0.51 -0.83 16 7 C 0.49 2.22 6.67 70.33 0.47 2.69 16 8 O -0.51 -4.61 12.06 19.91 0.24 -4.37 16 9 C -0.12 -0.25 5.87 -20.10 -0.12 -0.37 16 10 C -0.04 0.14 9.62 22.54 0.22 0.36 16 11 C -0.12 0.56 8.64 22.23 0.19 0.75 16 12 C -0.08 0.08 5.27 -19.78 -0.10 -0.02 16 13 C -0.10 0.23 2.08 71.23 0.15 0.38 16 14 O -0.54 0.58 12.82 -148.98 -1.91 -1.33 16 15 Si 0.99 -4.97 25.47 68.60 1.75 -3.22 16 16 H -0.25 1.04 7.11 99.48 0.71 1.75 16 17 H -0.27 0.14 7.11 99.48 0.71 0.85 16 18 H -0.23 1.83 6.73 99.48 0.67 2.50 16 19 C -0.04 -0.10 6.31 22.29 0.14 0.04 16 20 Cl -0.05 -0.26 27.56 -2.72 -0.07 -0.34 16 21 C -0.06 -0.21 9.37 22.56 0.21 0.00 16 22 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 23 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 24 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 25 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 26 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 27 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 28 H 0.05 0.31 6.28 -2.39 -0.01 0.30 16 29 H 0.06 0.14 7.96 -2.38 -0.02 0.12 16 30 H 0.06 0.39 7.42 -2.39 -0.02 0.37 16 31 H 0.14 -1.05 7.96 -2.39 -0.02 -1.07 16 32 H 0.08 -0.04 7.52 -2.39 -0.02 -0.06 16 33 H 0.17 -1.36 7.61 -2.91 -0.02 -1.38 16 34 H 0.17 -1.61 4.86 -2.91 -0.01 -1.62 16 35 H 0.12 -0.18 7.39 -2.39 -0.02 -0.19 16 36 H 0.39 -3.32 8.70 -74.06 -0.64 -3.96 16 37 H 0.14 0.71 7.65 -2.91 -0.02 0.69 16 Total: 0.00 -13.18 324.92 6.02 -7.17 By element: Atomic # 1 Polarization: -4.81 SS G_CDS: 1.16 Total: -3.65 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 4.54 Total: 9.63 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -2.18 Total: -6.53 kcal Atomic # 14 Polarization: -8.85 SS G_CDS: 2.58 Total: -6.28 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.07 Total: -0.34 kcal Total: -13.18 6.02 -7.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_8687484_4858416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.106 kcal (2) G-P(sol) polarization free energy of solvation -13.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds