Wall clock time and date at job start Sat Mar 6 2021 09:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.53002 * 109.47233 * 175.00027 * 3 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46978 * 300.00098 * 6 5 3 8 8 H 1.09002 * 109.46838 * 299.99316 * 7 6 5 9 9 C 1.50701 * 109.46958 * 179.97438 * 7 6 5 10 10 O 1.20826 * 119.99939 * 359.97438 * 9 7 6 11 11 O 1.34230 * 120.00046 * 180.02562 * 9 7 6 12 12 C 1.45192 * 117.00018 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47079 * 179.97438 * 12 11 9 14 14 C 1.38940 * 120.04026 * 180.02562 * 13 12 11 15 15 O 1.34880 * 120.99359 * 359.97438 * 14 13 12 16 16 C 1.33721 * 122.41078 * 179.97438 * 15 14 13 17 17 C 1.34539 * 122.85653 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.19843 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47304 * 250.00096 * 18 17 16 20 20 Si 1.86299 * 109.47272 * 10.00419 * 18 17 16 21 21 C 1.41990 * 119.59724 * 0.02562 * 17 16 15 22 22 O 1.21922 * 121.40915 * 180.02562 * 21 17 16 23 23 C 1.40454 * 119.33360 * 179.97438 * 14 13 12 24 24 C 1.39340 * 120.24407 * 359.97438 * 23 14 13 25 25 C 1.37884 * 119.52483 * 0.02562 * 24 23 14 26 26 Br 1.89105 * 119.86595 * 179.97438 * 25 24 23 27 27 C 1.37866 * 120.04291 * 359.72221 * 13 12 11 28 28 C 1.53002 * 109.47128 * 59.99726 * 7 6 5 29 29 C 1.52992 * 109.47106 * 300.00123 * 28 7 6 30 30 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 32 32 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 33 33 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 34 34 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 35 35 H 1.09000 * 109.46986 * 299.99797 * 5 3 2 36 36 H 1.09002 * 109.47075 * 59.99068 * 5 3 2 37 37 H 1.09002 * 109.47045 * 59.99931 * 6 5 3 38 38 H 1.08998 * 109.47171 * 179.97438 * 6 5 3 39 39 H 1.08998 * 109.47321 * 299.99871 * 12 11 9 40 40 H 1.09001 * 109.47630 * 59.99681 * 12 11 9 41 41 H 1.07999 * 118.57066 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.47045 * 130.00202 * 18 17 16 43 43 H 0.96699 * 113.99724 * 59.99988 * 19 18 17 44 44 H 1.48506 * 109.99745 * 180.02562 * 20 18 17 45 45 H 1.48506 * 109.99970 * 301.31630 * 20 18 17 46 46 H 1.08003 * 120.23881 * 179.97438 * 24 23 14 47 47 H 1.08002 * 119.64137 * 0.02562 * 27 13 12 48 48 H 1.09002 * 109.47070 * 60.00059 * 28 7 6 49 49 H 1.08996 * 109.46550 * 179.97438 * 28 7 6 50 50 H 1.09002 * 109.47103 * 299.99915 * 29 28 7 51 51 H 1.08998 * 109.46862 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 6 4.0749 2.8869 0.1251 7 6 3.6701 3.5704 -1.1826 8 1 4.1048 3.0310 -2.0241 9 6 4.1719 4.9914 -1.1829 10 8 4.7895 5.4142 -0.2344 11 8 3.9319 5.7876 -2.2366 12 6 4.4445 7.1443 -2.1678 13 6 4.0817 7.8830 -3.4302 14 6 4.4675 9.2074 -3.5965 15 8 5.1671 9.8522 -2.6405 16 6 5.5533 11.1258 -2.7709 17 6 5.2772 11.8642 -3.8612 18 6 5.7415 13.2955 -3.9448 19 8 4.6135 14.1682 -3.8552 20 14 6.9146 13.6508 -2.5417 21 6 4.5449 11.2871 -4.9320 22 8 4.2769 11.9257 -5.9355 23 6 4.1219 9.8814 -4.7792 24 6 3.3998 9.2266 -5.7749 25 6 3.0264 7.9121 -5.5905 26 35 2.0456 7.0143 -6.9351 27 6 3.3720 7.2436 -4.4243 28 6 2.1452 3.5684 -1.3083 29 6 1.6353 2.1260 -1.3076 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 0.9572 1.0571 36 1 3.9995 0.9053 -0.7160 37 1 3.6402 3.4263 0.9667 38 1 5.1611 2.8882 0.2151 39 1 4.0077 7.6547 -1.3095 40 1 5.5290 7.1181 -2.0615 41 1 6.1117 11.5812 -1.9664 42 1 6.2515 13.4572 -4.8945 43 1 4.1113 14.0787 -3.0338 44 1 7.3792 15.0596 -2.6126 45 1 6.2410 13.4035 -1.2415 46 1 3.1337 9.7451 -6.6841 47 1 3.0782 6.2127 -4.2923 48 1 1.7106 4.1079 -0.4667 49 1 1.8569 4.0557 -2.2397 50 1 2.0699 1.5866 -2.1492 51 1 0.5490 2.1247 -1.3976 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9141568_484008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:02:48 Heat of formation + Delta-G solvation = -141.332087 kcal Electronic energy + Delta-G solvation = -36023.943278 eV Core-core repulsion = 31094.967520 eV Total energy + Delta-G solvation = -4928.975758 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.081 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.35178 -41.87596 -40.18072 -40.02864 -39.46779 -38.04859 -37.64441 -34.99593 -34.62261 -33.68538 -33.15013 -31.77924 -30.74821 -30.39374 -28.27155 -27.49255 -26.04922 -25.37220 -24.45003 -23.61883 -22.98062 -22.34027 -21.27103 -20.74911 -20.62503 -19.58242 -19.11525 -18.53029 -17.97835 -17.82574 -17.57399 -17.48532 -16.79205 -16.47732 -16.26832 -16.18922 -15.98670 -15.69082 -15.61422 -15.31485 -15.29982 -15.00254 -14.85710 -14.56487 -14.45147 -14.22218 -14.08296 -13.93395 -13.87713 -13.70229 -13.33413 -13.06873 -12.87443 -12.74224 -12.55496 -12.47844 -12.27347 -12.17921 -12.01656 -11.85871 -11.82224 -11.66741 -11.58519 -11.52140 -11.34097 -11.31587 -10.98631 -10.84819 -10.71582 -10.57222 -10.42876 -9.59262 -5.00052 -0.85565 -0.70869 0.03017 0.33719 0.96603 1.11343 1.15755 1.39836 1.39941 1.46530 1.95317 2.27012 2.67653 2.85604 3.18388 3.29354 3.36690 3.47520 3.64361 3.65527 3.71664 3.73895 3.83039 3.96487 3.97646 4.09723 4.10451 4.12545 4.17306 4.28464 4.31010 4.35931 4.42855 4.53055 4.56957 4.58720 4.60750 4.64277 4.65857 4.74559 4.78272 4.79067 4.93496 5.02178 5.06240 5.15102 5.17022 5.19854 5.24768 5.26938 5.32484 5.36816 5.39674 5.56667 5.64504 5.74364 6.31494 6.47028 6.63626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.064 0.936 5 C -0.110 4.110 6 C -0.102 4.102 7 C -0.074 4.074 8 H 0.130 0.870 9 C 0.472 3.528 10 O -0.531 6.531 11 O -0.351 6.351 12 C 0.116 3.884 13 C -0.097 4.097 14 C 0.165 3.835 15 O -0.202 6.202 16 C 0.171 3.829 17 C -0.334 4.334 18 C -0.073 4.073 19 O -0.550 6.550 20 Si 0.784 3.216 21 C 0.425 3.575 22 O -0.495 6.495 23 C -0.226 4.226 24 C -0.009 4.009 25 C -0.120 4.120 26 Br -0.024 7.024 27 C -0.007 4.007 28 C -0.108 4.108 29 C -0.111 4.111 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.242 0.758 42 H 0.105 0.895 43 H 0.386 0.614 44 H -0.299 1.299 45 H -0.239 1.239 46 H 0.145 0.855 47 H 0.177 0.823 48 H 0.061 0.939 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -6.501 4.929 8.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.082 0.918 5 C -0.148 4.148 6 C -0.140 4.140 7 C -0.093 4.093 8 H 0.148 0.852 9 C 0.316 3.684 10 O -0.420 6.420 11 O -0.267 6.267 12 C 0.043 3.957 13 C -0.098 4.098 14 C 0.120 3.880 15 O -0.104 6.104 16 C 0.105 3.895 17 C -0.336 4.336 18 C -0.178 4.178 19 O -0.358 6.358 20 Si 0.684 3.316 21 C 0.311 3.689 22 O -0.378 6.378 23 C -0.228 4.228 24 C -0.029 4.029 25 C -0.200 4.200 26 Br 0.061 6.939 27 C -0.026 4.026 28 C -0.146 4.146 29 C -0.149 4.149 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.257 0.743 42 H 0.123 0.877 43 H 0.235 0.765 44 H -0.227 1.227 45 H -0.165 1.165 46 H 0.163 0.837 47 H 0.194 0.806 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.094 0.906 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.145 -5.841 4.477 7.666 hybrid contribution -1.043 1.182 -0.071 1.578 sum 1.101 -4.659 4.406 6.506 Atomic orbital electron populations 1.21842 0.96014 1.01582 1.01943 1.21552 0.95807 0.96165 1.02127 1.21227 0.95282 0.96041 0.98278 0.91801 1.21578 0.95239 0.95054 1.02887 1.21415 1.01262 0.96099 0.95177 1.21254 0.98840 0.86755 1.02419 0.85244 1.24278 0.75814 0.89205 0.79059 1.90697 1.39079 1.76116 1.36064 1.86405 1.72383 1.24094 1.43859 1.21561 1.00822 0.78881 0.94460 1.18841 1.03012 0.90075 0.97911 1.18871 0.91896 0.90981 0.86292 1.83173 1.60449 1.25281 1.41527 1.24517 0.88813 0.78957 0.97173 1.21878 1.12263 1.01262 0.98229 1.25234 0.94500 0.84107 1.13995 1.86660 1.42761 1.61614 1.44785 0.94456 0.81005 0.83218 0.72919 1.18763 0.77696 0.85710 0.86754 1.90753 1.51032 1.64298 1.31725 1.20730 1.07768 0.97757 0.96595 1.21118 0.91403 0.92389 0.97998 1.21859 1.05475 0.95582 0.97091 1.96845 1.71408 1.76438 1.49179 1.21232 0.91429 1.01321 0.88649 1.21538 0.91017 0.98610 1.03398 1.21626 1.01485 0.94101 0.97663 0.93018 0.93154 0.92062 0.91555 0.92283 0.91389 0.90711 0.92240 0.91554 0.88320 0.87933 0.74284 0.87721 0.76511 1.22697 1.16473 0.83749 0.80603 0.92049 0.89514 0.90630 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.60 9.67 71.98 0.70 1.30 16 2 C -0.12 0.54 5.40 30.60 0.17 0.71 16 3 C -0.09 0.46 2.19 -10.79 -0.02 0.44 16 4 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 5 C -0.11 0.57 5.20 30.59 0.16 0.73 16 6 C -0.10 0.31 4.49 30.59 0.14 0.45 16 7 C -0.07 0.37 2.63 -11.54 -0.03 0.33 16 8 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 9 C 0.47 -0.31 7.25 71.24 0.52 0.20 16 10 O -0.53 -2.94 15.73 21.97 0.35 -2.60 16 11 O -0.35 1.04 8.58 -51.41 -0.44 0.60 16 12 C 0.12 -0.44 5.38 71.24 0.38 -0.06 16 13 C -0.10 0.25 5.89 -19.78 -0.12 0.13 16 14 C 0.17 -0.15 6.74 22.98 0.15 0.01 16 15 O -0.20 0.99 9.21 -2.75 -0.03 0.97 16 16 C 0.17 -1.20 9.99 66.97 0.67 -0.53 16 17 C -0.33 -0.07 5.32 -19.78 -0.11 -0.17 16 18 C -0.07 -0.05 2.46 71.24 0.17 0.12 16 19 O -0.55 -3.06 12.88 -148.98 -1.92 -4.98 16 20 Si 0.78 -5.42 30.06 68.60 2.06 -3.35 16 21 C 0.42 3.26 6.98 25.67 0.18 3.44 16 22 O -0.50 -8.00 16.93 -5.06 -0.09 -8.09 16 23 C -0.23 -0.89 5.89 -20.01 -0.12 -1.00 16 24 C -0.01 -0.04 9.40 22.45 0.21 0.17 16 25 C -0.12 -0.11 6.22 22.32 0.14 0.03 16 26 Br -0.02 -0.02 33.69 -20.37 -0.69 -0.71 16 27 C -0.01 0.02 9.10 22.31 0.20 0.22 16 28 C -0.11 0.68 5.13 30.59 0.16 0.83 16 29 C -0.11 0.75 4.96 30.59 0.15 0.90 16 30 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 31 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.06 -0.28 6.56 -2.39 -0.02 -0.29 16 33 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.06 -0.01 8.10 -2.39 -0.02 -0.03 16 38 H 0.07 -0.10 8.10 -2.39 -0.02 -0.12 16 39 H 0.10 -0.42 8.13 -2.39 -0.02 -0.44 16 40 H 0.10 -0.49 8.13 -2.39 -0.02 -0.51 16 41 H 0.24 -3.65 4.61 -2.91 -0.01 -3.66 16 42 H 0.10 0.38 7.96 -2.38 -0.02 0.37 16 43 H 0.39 -1.06 8.70 -74.06 -0.64 -1.70 16 44 H -0.30 -0.73 7.11 99.48 0.71 -0.03 16 45 H -0.24 2.05 6.86 99.48 0.68 2.73 16 46 H 0.14 0.81 7.81 -2.91 -0.02 0.79 16 47 H 0.18 -0.94 6.96 -2.91 -0.02 -0.96 16 48 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 49 H 0.09 -0.67 8.11 -2.39 -0.02 -0.69 16 50 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 51 H 0.07 -0.48 6.56 -2.39 -0.02 -0.50 16 Total: 0.00 -22.26 432.50 3.30 -18.96 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: 0.35 Total: -9.06 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 3.70 Total: 8.25 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -2.13 Total: -14.10 kcal Atomic # 14 Polarization: -5.42 SS G_CDS: 2.06 Total: -3.35 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -22.26 3.30 -18.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9141568_484008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.370 kcal (2) G-P(sol) polarization free energy of solvation -22.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds