Wall clock time and date at job start Sat Mar 6 2021 09:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37835 * 125.89507 * 2 1 4 4 C 1.47115 * 127.02855 * 0.02562 * 3 2 1 5 5 O 1.21545 * 119.99386 * 0.02562 * 4 3 2 6 6 O 1.34781 * 120.00125 * 179.97438 * 4 3 2 7 7 C 1.45201 * 116.99982 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47274 * 180.02562 * 7 6 4 9 9 H 1.09004 * 112.84671 * 316.19458 * 8 7 6 10 10 C 1.53781 * 113.61424 * 87.50230 * 8 7 6 11 11 C 1.53783 * 87.07996 * 139.98037 * 10 8 7 12 12 H 1.09003 * 113.60986 * 89.11495 * 11 10 8 13 13 O 1.42901 * 113.61287 * 220.01661 * 11 10 8 14 14 C 1.42896 * 113.99984 * 247.49509 * 13 11 10 15 15 C 1.53003 * 109.46911 * 60.00306 * 14 13 11 16 16 C 1.52995 * 109.47179 * 179.97438 * 14 13 11 17 17 C 1.52998 * 109.47376 * 300.00380 * 14 13 11 18 18 C 1.53778 * 113.61262 * 184.99811 * 8 7 6 19 19 C 1.46751 * 105.95259 * 179.97438 * 3 2 1 20 20 C 1.34432 * 106.37075 * 0.34525 * 19 3 2 21 21 C 1.50704 * 125.45814 * 179.78903 * 20 19 3 22 22 O 1.42896 * 109.47266 * 119.99651 * 21 20 19 23 23 Si 1.86293 * 109.46893 * 359.97438 * 21 20 19 24 24 N 1.34629 * 125.89477 * 180.31368 * 2 1 3 25 25 H 1.09002 * 109.47152 * 269.71452 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71553 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71533 * 1 2 3 28 28 H 1.09002 * 109.46820 * 300.00242 * 7 6 4 29 29 H 1.09000 * 109.47047 * 59.99702 * 7 6 4 30 30 H 1.08998 * 113.61326 * 254.53329 * 10 8 7 31 31 H 1.08995 * 113.61183 * 25.42966 * 10 8 7 32 32 H 1.09004 * 109.47043 * 59.99811 * 15 14 13 33 33 H 1.08997 * 109.46995 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47471 * 300.00112 * 15 14 13 35 35 H 1.09008 * 109.46900 * 60.00306 * 16 14 13 36 36 H 1.08997 * 109.47336 * 180.02562 * 16 14 13 37 37 H 1.08997 * 109.47638 * 300.00354 * 16 14 13 38 38 H 1.08999 * 109.47262 * 60.00191 * 17 14 13 39 39 H 1.09000 * 109.47274 * 179.97438 * 17 14 13 40 40 H 1.08995 * 109.47065 * 299.99658 * 17 14 13 41 41 H 1.08998 * 113.61877 * 334.56848 * 18 8 7 42 42 H 1.09007 * 113.61102 * 105.47336 * 18 8 7 43 43 H 1.07999 * 126.81861 * 180.14594 * 19 3 2 44 44 H 1.09001 * 109.47000 * 240.00019 * 21 20 19 45 45 H 0.96698 * 114.00308 * 180.02562 * 22 21 20 46 46 H 1.48504 * 110.00411 * 298.67983 * 23 21 20 47 47 H 1.48503 * 110.00477 * 60.00243 * 23 21 20 48 48 H 0.96999 * 124.81190 * 359.95301 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8832 2.5229 0.0005 5 8 0.6985 2.7946 0.0015 6 8 2.8010 3.5099 0.0010 7 6 2.3026 4.8736 0.0021 8 6 3.4823 5.8479 0.0018 9 1 4.2707 5.5580 0.6964 10 6 3.9954 6.1936 -1.4061 11 6 4.1592 7.6386 -0.9060 12 1 5.1337 7.8386 -0.4606 13 8 3.7738 8.6238 -1.8667 14 6 4.8605 9.4076 -2.3634 15 6 5.8819 8.4917 -3.0409 16 6 4.3342 10.4233 -3.3793 17 6 5.5292 10.1463 -1.2023 18 6 3.0635 7.3224 0.1256 19 6 3.6947 0.6161 0.0006 20 6 3.6109 -0.7256 -0.0068 21 6 4.7816 -1.6746 -0.0136 22 8 4.7290 -2.5044 1.1485 23 14 6.3700 -0.7012 -0.0109 24 7 2.2964 -1.0906 -0.0060 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8874 -0.5183 27 1 -0.3633 0.8926 -0.5094 28 1 1.6950 5.0390 -0.8877 29 1 1.6954 5.0378 0.8923 30 1 4.9387 5.7091 -1.6581 31 1 3.2408 6.0839 -2.1849 32 1 5.4055 7.9654 -3.8681 33 1 6.7106 9.0896 -3.4202 34 1 6.2569 7.7677 -2.3175 35 1 3.6063 11.0758 -2.8970 36 1 5.1632 11.0208 -3.7586 37 1 3.8582 9.8967 -4.2064 38 1 5.9042 9.4223 -0.4789 39 1 6.3584 10.7437 -1.5812 40 1 4.8016 10.7987 -0.7197 41 1 2.0542 7.5214 -0.2345 42 1 3.2547 7.7493 1.1102 43 1 4.5980 1.2080 0.0030 44 1 4.7392 -2.2975 -0.9071 45 1 5.4541 -3.1412 1.2104 46 1 6.4513 0.1417 -1.2309 47 1 6.4405 0.1527 1.2020 48 1 1.9759 -2.0061 -0.0103 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9864948_14598394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:34:13 Heat of formation + Delta-G solvation = -100.818602 kcal Electronic energy + Delta-G solvation = -27633.224472 eV Core-core repulsion = 23656.446737 eV Total energy + Delta-G solvation = -3976.777735 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.182 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.65341 -41.34848 -40.69086 -38.58128 -37.72643 -37.24202 -33.95018 -33.20145 -32.55453 -29.92189 -29.13097 -28.38029 -28.32231 -26.70274 -25.94405 -24.25557 -23.27518 -21.76317 -21.10745 -20.86441 -20.42225 -18.88668 -18.45323 -17.98110 -17.64762 -17.52166 -17.04529 -16.50966 -16.07615 -15.97038 -15.79757 -15.45933 -15.20204 -14.99986 -14.71106 -14.61707 -14.30785 -14.02405 -14.00632 -13.75606 -13.58595 -13.52293 -13.34305 -13.21556 -13.02056 -13.01941 -12.82025 -12.68632 -12.60371 -12.44580 -12.22596 -12.07357 -11.92310 -11.82708 -11.53150 -11.38082 -11.22444 -10.48353 -10.40951 -10.21593 -9.40613 -4.97819 0.23033 0.91531 1.20840 1.50855 1.70876 2.00809 2.04381 2.15966 2.68923 3.21755 3.36718 3.48417 3.62980 3.67103 3.70999 3.80455 3.85029 3.89411 3.93312 3.95454 4.05444 4.08504 4.14571 4.22471 4.30003 4.39823 4.45261 4.52486 4.56794 4.59898 4.64495 4.70641 4.71595 4.75890 4.77443 4.81459 4.88300 4.90907 4.95113 4.98887 5.07757 5.12579 5.23519 5.30201 5.30688 5.35315 5.39438 5.62547 6.27023 6.37988 6.70120 6.84183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.136 3.864 3 C -0.260 4.260 4 C 0.538 3.462 5 O -0.541 6.541 6 O -0.358 6.358 7 C 0.080 3.920 8 C -0.105 4.105 9 H 0.112 0.888 10 C -0.149 4.149 11 C 0.064 3.936 12 H 0.105 0.895 13 O -0.382 6.382 14 C 0.097 3.903 15 C -0.174 4.174 16 C -0.139 4.139 17 C -0.177 4.177 18 C -0.122 4.122 19 C -0.168 4.168 20 C 0.025 3.975 21 C -0.056 4.056 22 O -0.566 6.566 23 Si 0.805 3.195 24 N -0.515 5.515 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.143 0.857 44 H 0.106 0.894 45 H 0.409 0.591 46 H -0.289 1.289 47 H -0.300 1.300 48 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -5.119 -0.707 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.014 3.986 3 C -0.268 4.268 4 C 0.387 3.613 5 O -0.434 6.434 6 O -0.275 6.275 7 C 0.006 3.994 8 C -0.123 4.123 9 H 0.130 0.870 10 C -0.187 4.187 11 C 0.006 3.994 12 H 0.123 0.877 13 O -0.301 6.301 14 C 0.058 3.942 15 C -0.231 4.231 16 C -0.197 4.197 17 C -0.234 4.234 18 C -0.160 4.160 19 C -0.191 4.191 20 C -0.085 4.085 21 C -0.165 4.165 22 O -0.376 6.376 23 Si 0.710 3.290 24 N -0.112 5.112 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.161 0.839 44 H 0.123 0.877 45 H 0.262 0.738 46 H -0.216 1.216 47 H -0.228 1.228 48 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.971 -4.003 -0.669 6.417 hybrid contribution -0.752 -0.085 -0.036 0.757 sum 4.219 -4.088 -0.705 5.916 Atomic orbital electron populations 1.20713 0.84702 1.05328 1.04683 1.20961 0.94665 0.84953 0.98003 1.19437 0.94052 0.89072 1.24197 1.20261 0.83393 0.85874 0.71811 1.90786 1.18639 1.84955 1.49024 1.86545 1.39763 1.16952 1.84211 1.23164 0.97037 0.76659 1.02530 1.22338 0.97514 0.93234 0.99224 0.86979 1.23604 1.02114 0.96600 0.96372 1.23625 0.98845 0.86928 0.89969 0.87733 1.88018 1.33974 1.49261 1.58895 1.21703 0.87150 0.91194 0.94132 1.22450 0.99395 1.00110 1.01193 1.21796 1.02159 0.97841 0.97866 1.22446 1.01539 1.01068 0.98332 1.23208 1.00050 0.92778 0.99949 1.21778 0.95907 0.93266 1.08167 1.20134 0.84987 0.93746 1.09597 1.24545 1.02139 0.97637 0.92198 1.86419 1.55290 1.53546 1.42385 0.94368 0.78365 0.79885 0.76402 1.41530 1.04923 1.09280 1.55502 0.89028 0.88085 0.89624 0.91486 0.90868 0.90646 0.90311 0.92589 0.90395 0.92103 0.92245 0.89595 0.92524 0.91797 0.90284 0.92112 0.89429 0.88967 0.83923 0.87673 0.73807 1.21637 1.22756 0.72161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.13 9.91 71.24 0.71 0.58 16 2 C 0.14 0.78 7.22 42.04 0.30 1.08 16 3 C -0.26 -2.91 6.33 -18.82 -0.12 -3.03 16 4 C 0.54 7.53 7.95 70.15 0.56 8.08 16 5 O -0.54 -9.03 14.66 19.69 0.29 -8.75 16 6 O -0.36 -4.25 10.12 -56.92 -0.58 -4.83 16 7 C 0.08 0.58 5.31 71.98 0.38 0.97 16 8 C -0.10 -0.30 4.02 -10.27 -0.04 -0.34 16 9 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 10 C -0.15 -0.51 7.46 31.12 0.23 -0.28 16 11 C 0.06 0.15 2.82 31.12 0.09 0.23 16 12 H 0.11 -0.05 5.55 -2.39 -0.01 -0.06 16 13 O -0.38 -2.24 10.00 -148.98 -1.49 -3.73 16 14 C 0.10 0.18 1.11 -10.79 -0.01 0.17 16 15 C -0.17 -0.05 8.38 71.98 0.60 0.55 16 16 C -0.14 -0.14 8.84 71.98 0.64 0.50 16 17 C -0.18 0.12 8.38 71.98 0.60 0.72 16 18 C -0.12 -0.19 7.47 31.12 0.23 0.05 16 19 C -0.17 -1.54 9.47 23.63 0.22 -1.32 16 20 C 0.02 0.10 6.50 40.97 0.27 0.37 16 21 C -0.06 0.18 3.07 71.24 0.22 0.40 16 22 O -0.57 2.16 12.86 -148.98 -1.92 0.24 16 23 Si 0.81 -2.66 30.55 68.60 2.10 -0.56 16 24 N -0.52 -0.86 5.89 -170.37 -1.00 -1.86 16 25 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.09 0.48 6.50 -2.38 -0.02 0.47 16 28 H 0.07 0.56 7.84 -2.39 -0.02 0.54 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.08 0.47 7.89 -2.39 -0.02 0.45 16 32 H 0.05 0.12 8.14 -2.38 -0.02 0.10 16 33 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.06 -0.01 7.02 -2.39 -0.02 -0.03 16 35 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.12 16 38 H 0.06 -0.10 6.25 -2.39 -0.01 -0.12 16 39 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.09 0.28 8.10 -2.39 -0.02 0.26 16 42 H 0.09 -0.11 8.14 -2.38 -0.02 -0.13 16 43 H 0.14 1.30 6.20 -2.91 -0.02 1.28 16 44 H 0.11 -0.90 7.96 -2.39 -0.02 -0.92 16 45 H 0.41 -5.94 8.74 -74.06 -0.65 -6.59 16 46 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 47 H -0.30 -1.63 7.11 99.48 0.71 -0.92 16 48 H 0.44 -2.10 8.96 -92.71 -0.83 -2.93 16 Total: 0.00 -21.41 389.40 1.81 -19.60 By element: Atomic # 1 Polarization: -8.37 SS G_CDS: -0.47 Total: -8.84 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.88 Total: 8.73 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -1.00 Total: -1.86 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -3.69 Total: -17.07 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.10 Total: -0.56 kcal Total: -21.41 1.81 -19.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9864948_14598394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.217 kcal (2) G-P(sol) polarization free energy of solvation -21.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds