Wall clock time and date at job start Sat Mar 6 2021 09:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37848 * 125.89415 * 2 1 4 4 C 1.47103 * 127.02548 * 0.02562 * 3 2 1 5 5 O 1.21549 * 119.99918 * 359.97438 * 4 3 2 6 6 O 1.34788 * 120.00130 * 180.02562 * 4 3 2 7 7 C 1.45200 * 116.99930 * 180.02562 * 6 4 3 8 8 C 1.47202 * 109.46743 * 179.97438 * 7 6 4 9 9 C 7.14530 * 113.38240 * 0.02562 * 2 1 3 10 10 C 8.44565 * 117.80706 * 0.02562 * 2 1 3 11 11 C 1.39270 * 120.05417 * 350.16231 * 10 9 8 12 12 C 1.39417 * 119.74952 * 179.97438 * 11 10 9 13 13 C 1.43196 * 120.06953 * 179.97438 * 12 11 10 14 14 N 9.27942 * 160.83431 * 179.97438 * 6 1 2 15 15 C 1.39660 * 119.86346 * 0.02562 * 12 11 10 16 16 C 1.38306 * 120.10654 * 359.97438 * 15 12 11 17 17 F 1.35099 * 119.87147 * 179.97438 * 16 15 12 18 18 C 1.38289 * 120.24750 * 359.72824 * 16 15 12 19 19 C 1.46741 * 105.94799 * 179.97438 * 3 2 1 20 20 C 1.34440 * 106.37782 * 0.02562 * 19 3 2 21 21 C 1.50697 * 125.45869 * 180.02562 * 20 19 3 22 22 O 1.42900 * 109.47207 * 119.97383 * 21 20 19 23 23 Si 1.86306 * 109.46961 * 359.97438 * 21 20 19 24 24 H 1.48500 * 109.47027 * 299.99519 * 23 21 20 25 25 H 1.48499 * 109.47402 * 60.00030 * 23 21 20 26 26 H 1.48500 * 109.46681 * 180.02562 * 23 21 20 27 27 N 1.34626 * 125.89892 * 179.69135 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99938 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00038 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00019 * 1 2 3 31 31 H 1.08995 * 109.46919 * 299.99507 * 7 6 4 32 32 H 1.08995 * 109.47494 * 59.99901 * 7 6 4 33 33 H 1.07992 * 120.12313 * 359.97438 * 11 10 9 34 34 H 1.08000 * 119.94896 * 179.97438 * 15 12 11 35 35 H 1.08007 * 119.93037 * 180.27630 * 18 16 15 36 36 H 1.08000 * 126.81036 * 180.02562 * 19 3 2 37 37 H 1.09001 * 109.47384 * 239.97827 * 21 20 19 38 38 H 0.96695 * 114.00190 * 179.97438 * 22 21 20 39 39 H 0.97000 * 124.80625 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8832 2.5229 0.0005 5 8 0.6984 2.7946 0.0006 6 8 2.8010 3.5099 -0.0001 7 6 2.3024 4.8737 0.0011 8 6 3.4375 5.8110 0.0008 9 6 4.3428 6.5585 0.0029 10 6 5.4469 7.4704 0.0033 11 6 6.7410 6.9987 0.2095 12 6 7.8113 7.8920 0.2081 13 6 9.1446 7.4146 0.4199 14 7 5.8871 12.2612 -0.0016 15 6 7.5804 9.2537 0.0007 16 6 6.2929 9.7158 -0.2034 17 9 6.0749 11.0341 -0.4030 18 6 5.2286 8.8329 -0.2090 19 6 3.6946 0.6161 0.0006 20 6 3.6109 -0.7257 0.0004 21 6 4.7816 -1.6746 0.0014 22 8 4.7267 -2.4976 1.1683 23 14 6.3701 -0.7010 0.0022 24 1 6.4272 0.1541 -1.2105 25 1 6.4256 0.1548 1.2146 26 1 7.5237 -1.6362 0.0026 27 7 2.2964 -1.0905 0.0059 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6942 5.0388 -0.8882 32 1 1.6961 5.0381 0.8917 33 1 6.9146 5.9450 0.3698 34 1 8.4085 9.9470 -0.0002 35 1 4.2257 9.1987 -0.3734 36 1 4.5979 1.2082 0.0012 37 1 4.7410 -2.3027 -0.8885 38 1 5.4512 -3.1345 1.2349 39 1 1.9759 -2.0060 0.0112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9864948_15358960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:49:18 Heat of formation + Delta-G solvation = 325.290814 kcal Electronic energy + Delta-G solvation = -26534.170512 eV Core-core repulsion = 22226.121946 eV Total energy + Delta-G solvation = -4308.048566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.097 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -53.27579 -42.54444 -41.13459 -40.90323 -37.87220 -37.57719 -35.79085 -33.91928 -33.10944 -32.92877 -32.25894 -29.35151 -28.75136 -28.49431 -26.77862 -25.78177 -24.27367 -23.67274 -21.65263 -21.23382 -20.87394 -19.15133 -18.85423 -18.49556 -18.46778 -18.37965 -18.00030 -17.65766 -17.62858 -16.98174 -16.60841 -16.22666 -15.92671 -15.68493 -15.41894 -15.07735 -15.00493 -14.88467 -14.52311 -14.23133 -14.03476 -13.94579 -13.78223 -13.66434 -13.48314 -12.97815 -12.83666 -12.55192 -12.52217 -12.03475 -11.95781 -11.87725 -11.85144 -11.52335 -11.11155 -10.45305 -10.18461 -10.07675 -9.27742 -8.02536 -6.68025 -2.51920 -1.39279 -0.72593 -0.09803 0.30930 0.66129 1.01970 1.06071 1.18874 1.44006 1.55521 1.64244 1.84549 2.00104 2.08811 2.22862 2.28545 2.60731 2.80688 3.18585 3.29728 3.35004 3.50307 3.60737 3.73795 3.82201 3.87795 3.90328 4.04315 4.10851 4.11625 4.15236 4.27874 4.35120 4.44096 4.51854 4.65457 4.67052 4.75812 4.87916 4.97112 5.05262 5.27345 5.50928 5.75613 6.01704 6.36689 6.69724 6.70378 6.78272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.136 3.864 3 C -0.259 4.259 4 C 0.547 3.453 5 O -0.536 6.536 6 O -0.353 6.353 7 C 0.179 3.821 8 C -0.138 4.138 9 C -0.124 4.124 10 C 0.030 3.970 11 C -0.025 4.025 12 C -0.381 4.381 13 C 0.763 3.237 14 N -0.870 5.870 15 C 0.023 3.977 16 C -0.031 4.031 17 F 0.200 6.800 18 C -0.113 4.113 19 C -0.157 4.157 20 C 0.025 3.975 21 C -0.064 4.064 22 O -0.566 6.566 23 Si 0.998 3.002 24 H -0.256 1.256 25 H -0.268 1.268 26 H -0.246 1.246 27 N -0.518 5.518 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.193 0.807 34 H 0.187 0.813 35 H 0.128 0.872 36 H 0.158 0.842 37 H 0.103 0.897 38 H 0.404 0.596 39 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.629 -21.733 -0.288 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.014 3.986 3 C -0.267 4.267 4 C 0.395 3.605 5 O -0.428 6.428 6 O -0.270 6.270 7 C 0.107 3.893 8 C -0.139 4.139 9 C -0.124 4.124 10 C 0.029 3.971 11 C -0.050 4.050 12 C -0.384 4.384 13 C 0.746 3.254 14 N -0.801 5.801 15 C -0.005 4.005 16 C -0.062 4.062 17 F 0.215 6.785 18 C -0.146 4.146 19 C -0.180 4.180 20 C -0.085 4.085 21 C -0.173 4.173 22 O -0.376 6.376 23 Si 0.819 3.181 24 H -0.179 1.179 25 H -0.193 1.193 26 H -0.170 1.170 27 N -0.115 5.115 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.210 0.790 34 H 0.204 0.796 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.120 0.880 38 H 0.255 0.745 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 12.069 -19.687 -0.208 23.092 hybrid contribution -2.378 0.384 -0.506 2.461 sum 9.691 -19.302 -0.713 21.610 Atomic orbital electron populations 1.20709 0.85153 1.05126 1.04678 1.20894 0.94483 0.85102 0.98109 1.19312 0.94426 0.88386 1.24546 1.20191 0.83113 0.85449 0.71730 1.90831 1.18507 1.84646 1.48811 1.86556 1.40000 1.15586 1.84852 1.19620 0.89251 0.74836 1.05592 1.21609 0.95898 0.97560 0.98796 1.18903 0.93933 0.96201 1.03386 1.15423 0.90801 0.88669 1.02195 1.21472 0.88025 1.01813 0.93665 1.22618 1.04268 0.94251 1.17256 1.84402 0.81575 0.15705 0.43674 1.95576 1.96544 0.52391 1.35612 1.22268 0.96066 0.94989 0.87134 1.23403 0.95835 0.80643 1.06300 1.83669 1.95816 1.22417 1.76569 1.21451 0.98882 0.93177 1.01056 1.21935 0.96221 0.92882 1.06929 1.19961 0.84639 0.93815 1.10039 1.24561 1.03323 0.97572 0.91849 1.86438 1.54976 1.53825 1.42385 0.84989 0.73646 0.78963 0.80491 1.17938 1.19252 1.16970 1.41542 1.05224 1.09240 1.55467 0.88884 0.89586 0.88692 0.87049 0.87089 0.78967 0.79604 0.85420 0.82420 0.87959 0.74476 0.72395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.27 9.90 71.24 0.71 0.97 16 2 C 0.14 0.08 7.22 42.04 0.30 0.38 16 3 C -0.26 -1.18 6.33 -18.82 -0.12 -1.30 16 4 C 0.55 3.80 7.95 70.15 0.56 4.36 16 5 O -0.54 -5.40 14.67 19.68 0.29 -5.11 16 6 O -0.35 -1.73 10.08 -56.99 -0.57 -2.31 16 7 C 0.18 0.34 5.95 70.18 0.42 0.76 16 8 C -0.14 -0.39 13.74 31.13 0.43 0.04 16 9 C -0.12 -0.26 13.23 30.01 0.40 0.14 16 10 C 0.03 -0.04 5.72 -21.45 -0.12 -0.16 16 11 C -0.03 0.32 9.45 22.80 0.22 0.54 16 12 C -0.38 6.97 5.72 -21.41 -0.12 6.85 16 13 C 0.76 -25.57 25.12 69.07 1.74 -23.83 16 14 N -0.87 -31.08 22.35 37.02 0.83 -30.25 16 15 C 0.02 -0.17 9.72 22.63 0.22 0.05 16 16 C -0.03 -0.20 7.28 22.30 0.16 -0.04 16 17 F 0.20 4.35 8.85 44.97 0.40 4.75 16 18 C -0.11 -0.59 9.72 22.61 0.22 -0.37 16 19 C -0.16 -0.23 9.47 23.62 0.22 0.00 16 20 C 0.02 -0.04 6.50 40.97 0.27 0.22 16 21 C -0.06 0.48 3.07 71.23 0.22 0.70 16 22 O -0.57 3.84 12.86 -148.98 -1.92 1.93 16 23 Si 1.00 -7.76 25.83 68.60 1.77 -5.99 16 24 H -0.26 1.61 7.11 99.48 0.71 2.32 16 25 H -0.27 1.02 7.11 99.48 0.71 1.73 16 26 H -0.25 2.19 7.11 99.48 0.71 2.89 16 27 N -0.52 1.61 5.89 -170.37 -1.00 0.61 16 28 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.09 0.13 6.51 -2.39 -0.02 0.12 16 30 H 0.09 -0.71 8.14 -2.38 -0.02 -0.72 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.19 -3.90 8.06 -2.91 -0.02 -3.92 16 34 H 0.19 -2.33 8.06 -2.91 -0.02 -2.35 16 35 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.16 -0.18 6.20 -2.91 -0.02 -0.20 16 37 H 0.10 -1.25 7.96 -2.39 -0.02 -1.27 16 38 H 0.40 -6.35 8.74 -74.06 -0.65 -7.00 16 39 H 0.44 -3.75 8.96 -92.71 -0.83 -4.58 16 Total: 0.00 -65.30 373.05 5.94 -59.36 By element: Atomic # 1 Polarization: -12.73 SS G_CDS: 0.44 Total: -12.29 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 5.71 Total: -10.70 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: -0.18 Total: -29.64 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -2.20 Total: -5.49 kcal Atomic # 9 Polarization: 4.35 SS G_CDS: 0.40 Total: 4.75 kcal Atomic # 14 Polarization: -7.76 SS G_CDS: 1.77 Total: -5.99 kcal Total: -65.30 5.94 -59.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9864948_15358960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 384.653 kcal (2) G-P(sol) polarization free energy of solvation -65.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 319.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 325.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds