Wall clock time and date at job start Sat Mar 6 2021 09:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37842 * 125.89890 * 2 1 4 4 C 1.47111 * 127.02310 * 0.07350 * 3 2 1 5 5 O 1.21549 * 119.99987 * 359.97438 * 4 3 2 6 6 O 1.34782 * 120.00067 * 179.97438 * 4 3 2 7 7 C 1.45204 * 117.00284 * 180.02562 * 6 4 3 8 8 C 1.52992 * 109.47436 * 179.97438 * 7 6 4 9 9 H 1.08998 * 112.85247 * 45.33113 * 8 7 6 10 10 C 1.53785 * 113.61561 * 176.52845 * 8 7 6 11 11 C 1.53786 * 87.08091 * 139.98125 * 10 8 7 12 12 H 1.08993 * 113.61075 * 220.01663 * 11 10 8 13 13 N 1.46498 * 113.61379 * 89.19771 * 11 10 8 14 14 C 1.34779 * 119.99682 * 154.99533 * 13 11 10 15 15 O 1.21505 * 119.99923 * 0.02562 * 14 13 11 16 16 O 1.34632 * 119.99749 * 180.02562 * 14 13 11 17 17 C 1.45203 * 116.99813 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.46998 * 60.00452 * 17 16 14 19 19 C 1.53002 * 109.46993 * 179.97438 * 17 16 14 20 20 C 1.52993 * 109.47396 * 300.00270 * 17 16 14 21 21 C 1.53783 * 113.61558 * 274.13478 * 8 7 6 22 22 C 1.46743 * 105.95480 * 180.02562 * 3 2 1 23 23 C 1.34432 * 106.37165 * 0.02562 * 22 3 2 24 24 C 1.50707 * 125.45449 * 179.97438 * 23 22 3 25 25 O 1.42903 * 109.46442 * 245.02399 * 24 23 22 26 26 Si 1.86293 * 109.47256 * 5.01966 * 24 23 22 27 27 N 1.34630 * 125.89668 * 180.31322 * 2 1 3 28 28 H 1.09006 * 109.46656 * 89.99666 * 1 2 3 29 29 H 1.09000 * 109.47208 * 209.99581 * 1 2 3 30 30 H 1.09000 * 109.46958 * 330.00096 * 1 2 3 31 31 H 1.09002 * 109.46677 * 299.99925 * 7 6 4 32 32 H 1.09001 * 109.46837 * 59.99491 * 7 6 4 33 33 H 1.08995 * 113.61053 * 254.52824 * 10 8 7 34 34 H 1.08994 * 113.61339 * 25.43020 * 10 8 7 35 35 H 0.96998 * 119.99894 * 335.00398 * 13 11 10 36 36 H 1.08998 * 109.46877 * 59.99416 * 18 17 16 37 37 H 1.08996 * 109.47119 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46406 * 299.99904 * 18 17 16 39 39 H 1.09005 * 109.46857 * 60.00880 * 19 17 16 40 40 H 1.09002 * 109.47074 * 180.02562 * 19 17 16 41 41 H 1.08994 * 109.47940 * 300.00357 * 19 17 16 42 42 H 1.08992 * 109.47161 * 59.99631 * 20 17 16 43 43 H 1.09002 * 109.47151 * 179.97438 * 20 17 16 44 44 H 1.09005 * 109.47304 * 299.99640 * 20 17 16 45 45 H 1.09003 * 113.61458 * 334.56954 * 21 8 7 46 46 H 1.09003 * 113.61345 * 105.46461 * 21 8 7 47 47 H 1.08000 * 126.81739 * 179.97438 * 22 3 2 48 48 H 1.08999 * 109.47345 * 125.02470 * 24 23 22 49 49 H 0.96700 * 114.00311 * 60.00230 * 25 24 23 50 50 H 1.48506 * 109.99973 * 180.02562 * 26 24 23 51 51 H 1.48493 * 110.00375 * 301.32185 * 26 24 23 52 52 H 0.97005 * 124.80920 * 359.95782 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.1166 0.0000 4 6 1.8832 2.5228 0.0015 5 8 0.6985 2.7946 0.0025 6 8 2.8011 3.5098 0.0018 7 6 2.3027 4.8736 0.0039 8 6 3.4823 5.8478 0.0046 9 1 4.2580 5.5739 -0.7105 10 6 3.0617 7.3247 -0.0785 11 6 4.1761 7.6178 0.9400 12 1 3.8956 8.3527 1.6945 13 7 5.4744 7.9022 0.3237 14 6 6.3858 8.6435 0.9842 15 8 6.1309 9.0754 2.0909 16 8 7.5788 8.9053 0.4177 17 6 8.5116 9.7094 1.1870 18 6 8.8292 9.0006 2.5053 19 6 9.8018 9.8991 0.3868 20 6 7.8869 11.0749 1.4797 21 6 4.0228 6.1599 1.4101 22 6 3.6947 0.6160 -0.0006 23 6 3.6109 -0.7257 -0.0015 24 6 4.7817 -1.6746 -0.0030 25 8 4.7926 -2.4156 -1.2249 26 14 6.3659 -0.7066 0.1504 27 7 2.2964 -1.0906 -0.0060 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6945 5.0395 -0.8854 32 1 1.6961 5.0374 0.8946 33 1 3.2350 7.7736 -1.0565 34 1 2.0592 7.5153 0.3042 35 1 5.6779 7.5571 -0.5596 36 1 9.2742 8.0277 2.2967 37 1 9.5290 9.6044 3.0829 38 1 7.9102 8.8651 3.0754 39 1 9.5758 10.4038 -0.5525 40 1 10.5022 10.5023 0.9645 41 1 10.2467 8.9261 0.1786 42 1 6.9680 10.9394 2.0499 43 1 8.5870 11.6784 2.0576 44 1 7.6607 11.5799 0.5406 45 1 3.2834 6.0315 2.2007 46 1 4.9707 5.6697 1.6322 47 1 4.5980 1.2080 -0.0012 48 1 4.6931 -2.3622 0.8381 49 1 4.8693 -1.8665 -2.0172 50 1 7.5282 -1.6311 0.1495 51 1 6.4832 0.2570 -0.9734 52 1 1.9759 -2.0061 -0.0104 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9864948_15734084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:56:54 Heat of formation + Delta-G solvation = -132.379291 kcal Electronic energy + Delta-G solvation = -33179.833592 eV Core-core repulsion = 28533.815420 eV Total energy + Delta-G solvation = -4646.018172 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.192 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.52692 -41.94613 -41.09050 -40.18987 -38.02802 -37.88222 -37.19430 -35.34895 -34.08258 -33.00475 -32.38612 -29.74067 -28.99309 -28.36096 -28.29771 -26.72505 -25.98554 -24.68565 -23.71440 -22.94779 -21.61394 -21.15550 -20.83019 -20.13155 -19.33730 -19.27435 -18.11544 -17.60699 -17.44121 -17.18265 -16.99805 -16.92561 -16.52038 -16.47612 -15.79303 -15.57020 -15.47447 -15.40231 -15.13310 -14.98922 -14.73689 -14.45662 -14.39640 -13.97881 -13.93347 -13.59746 -13.53229 -13.45457 -13.35404 -13.23601 -13.04978 -13.02398 -12.91121 -12.86398 -12.50655 -12.32941 -12.28999 -12.01610 -11.93063 -11.79697 -11.72721 -11.39734 -11.35270 -11.14743 -11.10758 -10.86779 -10.17744 -10.04880 -9.30332 -4.86848 0.38835 1.09459 1.13493 1.22806 1.62831 1.68326 1.73633 1.92488 2.18650 2.33076 3.11585 3.35410 3.41389 3.46282 3.52910 3.73660 3.74667 3.77730 3.81815 3.83363 3.94878 4.05404 4.12324 4.25688 4.37888 4.41951 4.44510 4.48150 4.52531 4.61897 4.62577 4.63909 4.72262 4.74772 4.77101 4.77761 4.83454 4.87750 4.88173 4.90633 5.02120 5.05904 5.07902 5.10504 5.18012 5.27902 5.32463 5.45371 5.50667 5.55726 5.62547 5.77944 6.36843 6.38662 6.39990 6.87366 7.33749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.132 3.868 3 C -0.258 4.258 4 C 0.539 3.461 5 O -0.546 6.546 6 O -0.354 6.354 7 C 0.075 3.925 8 C -0.103 4.103 9 H 0.108 0.892 10 C -0.121 4.121 11 C 0.132 3.868 12 H 0.097 0.903 13 N -0.683 5.683 14 C 0.646 3.354 15 O -0.592 6.592 16 O -0.370 6.370 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.014 4.014 24 C -0.055 4.055 25 O -0.549 6.549 26 Si 0.782 3.218 27 N -0.521 5.521 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.164 0.836 48 H 0.133 0.867 49 H 0.389 0.611 50 H -0.295 1.295 51 H -0.281 1.281 52 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -1.571 -0.882 2.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.010 3.990 3 C -0.266 4.266 4 C 0.388 3.612 5 O -0.439 6.439 6 O -0.270 6.270 7 C 0.002 3.998 8 C -0.121 4.121 9 H 0.126 0.874 10 C -0.159 4.159 11 C 0.028 3.972 12 H 0.115 0.885 13 N -0.343 5.343 14 C 0.400 3.600 15 O -0.483 6.483 16 O -0.284 6.284 17 C 0.091 3.909 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.183 4.183 22 C -0.164 4.164 23 C -0.123 4.123 24 C -0.164 4.164 25 O -0.357 6.357 26 Si 0.685 3.315 27 N -0.117 5.117 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.182 0.818 48 H 0.151 0.849 49 H 0.239 0.761 50 H -0.223 1.223 51 H -0.207 1.207 52 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.589 -1.636 -0.299 2.300 hybrid contribution -0.645 -0.637 -1.399 1.667 sum 0.944 -2.272 -1.698 2.990 Atomic orbital electron populations 1.20679 0.85464 1.05075 1.04368 1.20893 0.94390 0.85267 0.98451 1.19459 0.94505 0.88742 1.23863 1.20276 0.83331 0.85962 0.71674 1.90798 1.18945 1.85010 1.49172 1.86549 1.39492 1.16819 1.84146 1.23221 0.97036 0.76775 1.02798 1.22653 0.97195 0.93419 0.98871 0.87360 1.23327 0.99011 0.93089 1.00446 1.21851 0.81071 0.97497 0.96811 0.88508 1.44366 1.14164 1.54002 1.21740 1.18297 0.80607 0.78291 0.82797 1.90906 1.79921 1.56676 1.20777 1.86310 1.24470 1.68356 1.49288 1.22355 0.87634 0.89452 0.91435 1.22477 1.03304 1.01241 0.96726 1.21895 0.93306 1.03603 1.00698 1.22475 1.02867 0.95613 1.02791 1.23581 1.02298 0.95297 0.97084 1.22015 0.96124 0.92749 1.05483 1.20870 0.85285 0.94676 1.11492 1.24929 1.02324 0.99179 0.89999 1.86573 1.95383 1.37463 1.16287 0.93439 0.71624 0.77595 0.88853 1.41570 1.05277 1.09104 1.55760 0.89398 0.88711 0.89589 0.90971 0.90880 0.88764 0.86735 0.74618 0.91892 0.89477 0.91745 0.91196 0.88316 0.91173 0.91738 0.89475 0.91937 0.88211 0.91251 0.81822 0.84897 0.76139 1.22256 1.20710 0.72678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.14 9.90 71.24 0.71 0.85 16 2 C 0.13 0.18 7.22 42.04 0.30 0.48 16 3 C -0.26 -1.31 6.33 -18.82 -0.12 -1.43 16 4 C 0.54 4.35 7.95 70.15 0.56 4.91 16 5 O -0.55 -6.45 14.67 19.68 0.29 -6.16 16 6 O -0.35 -1.83 10.12 -56.93 -0.58 -2.41 16 7 C 0.08 0.04 5.30 71.98 0.38 0.42 16 8 C -0.10 0.38 3.89 -10.27 -0.04 0.34 16 9 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 10 C -0.12 0.71 7.39 31.12 0.23 0.94 16 11 C 0.13 -0.18 4.33 45.58 0.20 0.02 16 12 H 0.10 0.19 7.46 -2.39 -0.02 0.18 16 13 N -0.68 -0.18 5.27 -567.34 -2.99 -3.17 16 14 C 0.65 4.27 8.06 129.79 1.05 5.31 16 15 O -0.59 -7.07 11.48 19.82 0.23 -6.84 16 16 O -0.37 -2.02 9.94 -55.41 -0.55 -2.57 16 17 C 0.13 0.37 1.13 -10.79 -0.01 0.36 16 18 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 19 C -0.14 0.29 8.85 71.98 0.64 0.92 16 20 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 21 C -0.14 0.26 7.44 31.18 0.23 0.49 16 22 C -0.14 -0.18 9.47 23.62 0.22 0.05 16 23 C -0.01 0.02 6.46 40.98 0.26 0.29 16 24 C -0.06 0.21 3.08 71.24 0.22 0.42 16 25 O -0.55 0.55 12.88 -148.98 -1.92 -1.37 16 26 Si 0.78 -2.85 30.56 68.60 2.10 -0.75 16 27 N -0.52 1.31 5.89 -170.37 -1.00 0.31 16 28 H 0.09 -0.19 8.14 -2.38 -0.02 -0.21 16 29 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.09 0.24 6.51 -2.39 -0.02 0.22 16 31 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.07 0.05 7.87 -2.39 -0.02 0.03 16 33 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.11 -0.86 8.10 -2.39 -0.02 -0.88 16 35 H 0.42 -1.70 8.81 -92.71 -0.82 -2.52 16 36 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 39 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 40 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 43 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 45 H 0.10 -0.23 7.92 -2.39 -0.02 -0.25 16 46 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.16 -0.20 6.22 -2.91 -0.02 -0.22 16 48 H 0.13 -0.85 7.96 -2.39 -0.02 -0.87 16 49 H 0.39 -2.19 8.70 -74.06 -0.64 -2.84 16 50 H -0.30 -0.98 7.11 99.48 0.71 -0.27 16 51 H -0.28 -0.24 7.11 99.48 0.71 0.47 16 52 H 0.43 -3.19 8.96 -92.70 -0.83 -4.02 16 Total: 0.00 -21.51 424.69 0.32 -21.19 By element: Atomic # 1 Polarization: -11.37 SS G_CDS: -1.29 Total: -12.65 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.03 Total: 14.42 kcal Atomic # 7 Polarization: 1.13 SS G_CDS: -3.99 Total: -2.86 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -2.53 Total: -19.35 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.10 Total: -0.75 kcal Total: -21.51 0.32 -21.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9864948_15734084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.191 kcal (2) G-P(sol) polarization free energy of solvation -21.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds