Wall clock time and date at job start Sat Mar 6 2021 09:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37846 * 125.89470 * 2 1 4 4 C 1.47104 * 127.02620 * 359.97438 * 3 2 1 5 5 O 1.21555 * 119.99808 * 0.02562 * 4 3 2 6 6 O 1.34784 * 120.00333 * 180.02562 * 4 3 2 7 7 C 1.45198 * 116.99999 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46571 * 179.97438 * 7 6 4 9 9 H 1.08991 * 112.85333 * 316.18976 * 8 7 6 10 10 C 1.53782 * 113.61521 * 87.50238 * 8 7 6 11 11 C 1.53782 * 87.08320 * 139.97646 * 10 8 7 12 12 H 1.09001 * 113.61717 * 89.11318 * 11 10 8 13 13 N 1.46497 * 113.61404 * 220.01790 * 11 10 8 14 14 C 1.34778 * 119.99741 * 252.49570 * 13 11 10 15 15 O 1.21502 * 120.00335 * 0.02562 * 14 13 11 16 16 O 1.34644 * 119.99561 * 180.02562 * 14 13 11 17 17 C 1.45205 * 116.99694 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46920 * 59.99813 * 17 16 14 19 19 C 1.52994 * 109.47118 * 180.02562 * 17 16 14 20 20 C 1.53004 * 109.46881 * 300.00216 * 17 16 14 21 21 C 1.53778 * 87.08162 * 334.56659 * 11 10 8 22 22 C 1.46742 * 105.94813 * 180.02562 * 3 2 1 23 23 C 1.34434 * 106.37807 * 359.73670 * 22 3 2 24 24 C 1.50693 * 125.45881 * 180.27378 * 23 22 3 25 25 O 1.42904 * 109.46767 * 120.17134 * 24 23 22 26 26 Si 1.86298 * 109.47466 * 0.17630 * 24 23 22 27 27 N 1.34629 * 125.89681 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47402 * 270.00338 * 1 2 3 29 29 H 1.09004 * 109.47234 * 30.00516 * 1 2 3 30 30 H 1.09002 * 109.46979 * 149.99941 * 1 2 3 31 31 H 1.09003 * 109.46952 * 299.99211 * 7 6 4 32 32 H 1.08997 * 109.47769 * 59.99906 * 7 6 4 33 33 H 1.08998 * 113.61287 * 254.52483 * 10 8 7 34 34 H 1.08996 * 113.61416 * 25.42490 * 10 8 7 35 35 H 0.96998 * 120.00243 * 72.49916 * 13 11 10 36 36 H 1.08998 * 109.47015 * 60.00227 * 18 17 16 37 37 H 1.09003 * 109.46501 * 179.97438 * 18 17 16 38 38 H 1.08996 * 109.47538 * 300.00057 * 18 17 16 39 39 H 1.09000 * 109.47645 * 59.99656 * 19 17 16 40 40 H 1.08996 * 109.47393 * 180.02562 * 19 17 16 41 41 H 1.08998 * 109.46904 * 299.99827 * 19 17 16 42 42 H 1.08996 * 109.47317 * 60.00102 * 20 17 16 43 43 H 1.09009 * 109.46979 * 180.02562 * 20 17 16 44 44 H 1.08993 * 109.47162 * 299.99719 * 20 17 16 45 45 H 1.09001 * 113.61231 * 270.88386 * 21 11 10 46 46 H 1.08999 * 113.69586 * 139.98982 * 21 11 10 47 47 H 1.08011 * 126.80932 * 179.97438 * 22 3 2 48 48 H 1.08998 * 109.47703 * 240.16737 * 24 23 22 49 49 H 0.96697 * 114.00277 * 300.00261 * 25 24 23 50 50 H 1.48497 * 110.00294 * 58.67044 * 26 24 23 51 51 H 1.48498 * 110.00550 * 179.97438 * 26 24 23 52 52 H 0.97001 * 124.80703 * 359.97264 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8831 2.5229 -0.0005 5 8 0.6984 2.7946 -0.0006 6 8 2.8009 3.5099 -0.0010 7 6 2.3024 4.8736 -0.0009 8 6 3.4822 5.8478 -0.0008 9 1 4.2700 5.5585 0.6945 10 6 3.9963 6.1928 -1.4085 11 6 4.1597 7.6381 -0.9091 12 1 5.1339 7.8385 -0.4630 13 7 3.7653 8.6477 -1.8947 14 6 4.7060 9.3857 -2.5167 15 8 5.8811 9.2135 -2.2604 16 8 4.3435 10.3139 -3.4222 17 6 5.4097 11.0719 -4.0522 18 6 6.3448 10.1158 -4.7953 19 6 4.8086 12.0710 -5.0428 20 6 6.1992 11.8281 -2.9817 21 6 3.0633 7.3225 0.1220 22 6 3.6946 0.6161 -0.0006 23 6 3.6109 -0.7256 0.0050 24 6 4.7815 -1.6745 0.0124 25 8 4.7218 -2.4954 1.1807 26 14 6.3700 -0.7011 0.0181 27 7 2.2963 -1.0906 -0.0005 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6948 5.0384 -0.8908 32 1 1.6954 5.0386 0.8892 33 1 4.9399 5.7083 -1.6595 34 1 3.2423 6.0828 -2.1878 35 1 2.8272 8.7850 -2.0996 36 1 5.7824 9.5771 -5.5579 37 1 7.1450 10.6849 -5.2686 38 1 6.7730 9.4043 -4.0893 39 1 4.1426 12.7521 -4.5131 40 1 5.6090 12.6397 -5.5161 41 1 4.2460 11.5326 -5.8054 42 1 6.6274 11.1166 -2.2756 43 1 6.9994 12.3975 -3.4547 44 1 5.5331 12.5092 -2.4523 45 1 2.0542 7.5213 -0.2390 46 1 3.2523 7.7495 1.1069 47 1 4.5979 1.2082 -0.0012 48 1 4.7445 -2.3044 -0.8764 49 1 4.7503 -2.0006 2.0110 50 1 6.4183 0.1853 1.2085 51 1 7.5322 -1.6254 0.0261 52 1 1.9758 -2.0061 -0.0005 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9864948_15734238.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:56:58 Heat of formation + Delta-G solvation = -134.792770 kcal Electronic energy + Delta-G solvation = -32915.279570 eV Core-core repulsion = 28269.156742 eV Total energy + Delta-G solvation = -4646.122828 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.192 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.52130 -41.89197 -41.08618 -40.12682 -38.04531 -37.89092 -37.18817 -35.38449 -34.20999 -33.00861 -32.37881 -29.72378 -28.98706 -28.36068 -28.29725 -26.72210 -25.96887 -24.78415 -23.70203 -22.35517 -21.60326 -21.41121 -20.86256 -20.31968 -19.31026 -19.06990 -18.21527 -17.74533 -17.41821 -17.16017 -16.99531 -16.97262 -16.53977 -16.28428 -16.13578 -15.58647 -15.51756 -15.39714 -15.25399 -14.70773 -14.54907 -14.52205 -14.22522 -13.96898 -13.93824 -13.56838 -13.45248 -13.44381 -13.35538 -13.14935 -13.04665 -12.96677 -12.87419 -12.86115 -12.50793 -12.40914 -12.28403 -12.19798 -11.96621 -11.87852 -11.72642 -11.39509 -11.37275 -11.21130 -11.08789 -10.87613 -10.13457 -10.04058 -9.28920 -4.86577 0.39165 1.08652 1.17972 1.25476 1.63800 1.69380 1.75208 1.93014 2.19114 2.33411 3.15997 3.34756 3.41345 3.46450 3.52773 3.74813 3.75228 3.77105 3.81370 3.83239 3.95121 4.04987 4.10896 4.23658 4.31182 4.38718 4.45440 4.52283 4.53179 4.61864 4.63937 4.65184 4.72850 4.73551 4.77064 4.79898 4.81064 4.86560 4.88107 4.90991 4.98474 5.06149 5.08553 5.11809 5.21006 5.27862 5.33170 5.45583 5.53356 5.56593 5.61012 5.78402 6.37152 6.39672 6.41583 6.87556 7.35341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.131 3.869 3 C -0.258 4.258 4 C 0.540 3.460 5 O -0.546 6.546 6 O -0.353 6.353 7 C 0.079 3.921 8 C -0.100 4.100 9 H 0.112 0.888 10 C -0.145 4.145 11 C 0.136 3.864 12 H 0.109 0.891 13 N -0.690 5.690 14 C 0.643 3.357 15 O -0.594 6.594 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.016 4.016 24 C -0.055 4.055 25 O -0.549 6.549 26 Si 0.782 3.218 27 N -0.521 5.521 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.417 0.583 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.167 0.833 48 H 0.134 0.866 49 H 0.389 0.611 50 H -0.282 1.282 51 H -0.296 1.296 52 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -0.325 -1.746 2.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.009 3.991 3 C -0.266 4.266 4 C 0.388 3.612 5 O -0.439 6.439 6 O -0.270 6.270 7 C 0.005 3.995 8 C -0.119 4.119 9 H 0.130 0.870 10 C -0.183 4.183 11 C 0.032 3.968 12 H 0.127 0.873 13 N -0.349 5.349 14 C 0.397 3.603 15 O -0.484 6.484 16 O -0.285 6.285 17 C 0.091 3.909 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.125 4.125 24 C -0.164 4.164 25 O -0.357 6.357 26 Si 0.686 3.314 27 N -0.117 5.117 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.254 0.746 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.113 0.887 47 H 0.184 0.816 48 H 0.151 0.849 49 H 0.238 0.762 50 H -0.208 1.208 51 H -0.223 1.223 52 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.698 -0.651 -1.703 1.952 hybrid contribution -0.967 -0.567 1.076 1.553 sum -1.665 -1.218 -0.627 2.156 Atomic orbital electron populations 1.20676 0.85467 1.05053 1.04370 1.20893 0.94388 0.85266 0.98505 1.19455 0.94512 0.88733 1.23870 1.20266 0.83319 0.85941 0.71663 1.90798 1.18923 1.85009 1.49192 1.86549 1.39485 1.16783 1.84148 1.23166 0.96753 0.76768 1.02825 1.22318 0.97643 0.93153 0.98767 0.86992 1.23606 1.02569 0.95218 0.96953 1.22550 1.00091 0.85491 0.88629 0.87333 1.44783 1.09237 1.38165 1.42743 1.18425 0.84787 0.78675 0.78444 1.90897 1.17833 1.71741 1.67974 1.86316 1.41415 1.48108 1.52706 1.22347 0.85395 0.90593 0.92604 1.22470 1.00102 1.00418 1.00713 1.21890 1.02562 0.97454 0.97588 1.22473 1.01042 1.00764 0.99421 1.23360 0.99456 0.93124 1.00064 1.22019 0.96147 0.92708 1.05413 1.20872 0.85285 0.94711 1.11599 1.24927 1.02292 0.97750 0.91402 1.86570 1.95601 1.36826 1.16716 0.93450 0.71622 0.78289 0.88087 1.41557 1.05275 1.09097 1.55792 0.89387 0.89576 0.88759 0.90877 0.90857 0.90846 0.89047 0.74588 0.91997 0.89492 0.91711 0.91195 0.88330 0.91228 0.91729 0.89496 0.91968 0.87548 0.88695 0.81612 0.84864 0.76154 1.20833 1.22327 0.72700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.15 9.90 71.24 0.71 0.85 16 2 C 0.13 0.18 7.22 42.04 0.30 0.48 16 3 C -0.26 -1.30 6.33 -18.82 -0.12 -1.42 16 4 C 0.54 4.29 7.95 70.15 0.56 4.84 16 5 O -0.55 -6.32 14.67 19.66 0.29 -6.03 16 6 O -0.35 -1.80 10.12 -56.96 -0.58 -2.38 16 7 C 0.08 0.03 5.31 71.98 0.38 0.41 16 8 C -0.10 0.34 4.02 -10.26 -0.04 0.30 16 9 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 10 C -0.14 0.28 7.43 31.12 0.23 0.51 16 11 C 0.14 -0.20 4.24 45.52 0.19 -0.01 16 12 H 0.11 0.19 7.47 -2.39 -0.02 0.17 16 13 N -0.69 -0.17 5.36 -567.61 -3.04 -3.21 16 14 C 0.64 4.34 8.06 129.79 1.05 5.38 16 15 O -0.59 -7.11 11.48 19.83 0.23 -6.88 16 16 O -0.37 -2.12 9.94 -55.53 -0.55 -2.67 16 17 C 0.13 0.40 1.13 -10.79 -0.01 0.39 16 18 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 19 C -0.14 0.25 8.85 71.98 0.64 0.89 16 20 C -0.18 -0.61 8.37 71.98 0.60 0.00 16 21 C -0.12 0.72 7.39 31.12 0.23 0.95 16 22 C -0.14 -0.17 9.47 23.62 0.22 0.05 16 23 C -0.02 0.02 6.47 40.97 0.27 0.29 16 24 C -0.05 0.19 3.08 71.23 0.22 0.41 16 25 O -0.55 0.53 12.88 -148.98 -1.92 -1.38 16 26 Si 0.78 -2.64 30.55 68.60 2.10 -0.55 16 27 N -0.52 1.26 5.89 -170.38 -1.00 0.26 16 28 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.09 0.23 6.51 -2.38 -0.02 0.21 16 30 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.07 0.02 7.84 -2.39 -0.02 0.00 16 32 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.09 -0.21 7.90 -2.39 -0.02 -0.23 16 35 H 0.42 -1.79 8.84 -92.71 -0.82 -2.61 16 36 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 39 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 43 H 0.09 -0.01 8.14 -2.38 -0.02 -0.03 16 44 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.11 -0.88 8.08 -2.39 -0.02 -0.90 16 46 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 47 H 0.17 -0.26 6.20 -2.91 -0.02 -0.27 16 48 H 0.13 -0.82 7.96 -2.39 -0.02 -0.84 16 49 H 0.39 -2.17 8.70 -74.06 -0.64 -2.81 16 50 H -0.28 -0.39 7.11 99.48 0.71 0.32 16 51 H -0.30 -1.08 7.11 99.48 0.71 -0.38 16 52 H 0.43 -3.10 8.96 -92.71 -0.83 -3.93 16 Total: 0.00 -21.50 424.75 0.26 -21.24 By element: Atomic # 1 Polarization: -11.43 SS G_CDS: -1.29 Total: -12.72 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.03 Total: 14.32 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -4.05 Total: -2.95 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -2.53 Total: -19.34 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: 2.10 Total: -0.55 kcal Total: -21.50 0.26 -21.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9864948_15734238.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.548 kcal (2) G-P(sol) polarization free energy of solvation -21.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds