Wall clock time and date at job start Sat Mar 6 2021 10:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37846 * 125.89447 * 2 1 4 4 C 1.47111 * 127.02441 * 359.97078 * 3 2 1 5 5 O 1.21552 * 119.99904 * 359.97438 * 4 3 2 6 6 O 1.34787 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99980 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47111 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.47514 * 305.00709 * 8 7 6 10 10 C 1.53002 * 109.46637 * 65.00579 * 8 7 6 11 11 C 1.52997 * 109.46817 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47452 * 300.00239 * 11 10 8 13 13 H 1.09002 * 109.46935 * 300.00125 * 12 11 10 14 14 O 1.42900 * 109.47304 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47159 * 59.99536 * 12 11 10 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 12 11 17 17 C 1.46744 * 105.95081 * 180.22608 * 3 2 1 18 18 C 1.34433 * 106.37452 * 359.57019 * 17 3 2 19 19 C 1.50700 * 125.45697 * 180.14641 * 18 17 3 20 20 O 1.42895 * 109.46938 * 245.33700 * 19 18 17 21 21 Si 1.86298 * 109.47297 * 5.33777 * 19 18 17 22 22 N 1.34619 * 125.89983 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.46884 * 89.99675 * 1 2 3 24 24 H 1.09002 * 109.46698 * 210.00235 * 1 2 3 25 25 H 1.09002 * 109.47104 * 329.99562 * 1 2 3 26 26 H 1.09008 * 109.46784 * 60.00349 * 7 6 4 27 27 H 1.09000 * 109.47295 * 300.00601 * 7 6 4 28 28 H 1.08993 * 109.47662 * 299.99908 * 10 8 7 29 29 H 1.09002 * 109.47075 * 60.00414 * 10 8 7 30 30 H 1.09002 * 109.47153 * 60.00231 * 11 10 8 31 31 H 1.09001 * 109.47289 * 180.02562 * 11 10 8 32 32 H 0.96700 * 113.99696 * 179.97438 * 14 12 11 33 33 H 1.08996 * 109.46929 * 179.97438 * 15 12 11 34 34 H 1.09002 * 109.46716 * 60.00455 * 15 12 11 35 35 H 1.09002 * 109.47153 * 299.99641 * 16 15 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 16 15 12 37 37 H 1.07999 * 126.81032 * 179.71846 * 17 3 2 38 38 H 1.08998 * 109.46904 * 125.33998 * 19 18 17 39 39 H 0.96701 * 114.00042 * 180.02562 * 20 19 18 40 40 H 1.48505 * 110.00078 * 300.00085 * 21 19 18 41 41 H 1.48501 * 110.00034 * 61.31894 * 21 19 18 42 42 H 0.97003 * 124.81193 * 0.03005 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8831 2.5229 -0.0006 5 8 0.6983 2.7946 -0.0016 6 8 2.8010 3.5100 0.0000 7 6 2.3024 4.8737 -0.0012 8 6 3.4821 5.8480 0.0003 9 1 4.1364 5.6251 0.8431 10 6 4.2655 5.7023 -1.3058 11 6 5.4448 6.6769 -1.3046 12 6 4.9224 8.1097 -1.1803 13 1 4.2680 8.3322 -2.0231 14 8 6.0238 9.0200 -1.1797 15 6 4.1389 8.2553 0.1258 16 6 2.9596 7.2806 0.1246 17 6 3.6946 0.6162 -0.0056 18 6 3.6110 -0.7256 0.0013 19 6 4.7817 -1.6744 0.0022 20 8 4.7938 -2.4171 -1.2186 21 14 6.3659 -0.7061 0.1557 22 7 2.2964 -1.0905 0.0005 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6941 5.0389 0.8881 27 1 1.6960 5.0381 -0.8919 28 1 4.6374 4.6816 -1.3946 29 1 3.6112 5.9253 -2.1487 30 1 6.0992 6.4544 -0.4617 31 1 6.0027 6.5735 -2.2353 32 1 5.7662 9.9490 -1.1039 33 1 3.7671 9.2760 0.2146 34 1 4.7933 8.0328 0.9687 35 1 2.3052 7.5031 -0.7183 36 1 2.4018 7.3841 1.0553 37 1 4.5978 1.2082 -0.0113 38 1 4.6924 -2.3609 0.8441 39 1 5.5222 -3.0494 -1.2871 40 1 6.4995 0.2336 -0.9864 41 1 6.3794 0.0457 1.4363 42 1 1.9760 -2.0061 0.0005 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9864948_16737258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:17:14 Heat of formation + Delta-G solvation = -143.826064 kcal Electronic energy + Delta-G solvation = -24139.083811 eV Core-core repulsion = 20471.516371 eV Total energy + Delta-G solvation = -3667.567440 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65069 -41.22669 -40.03353 -37.86263 -37.60444 -36.56589 -33.19576 -32.68087 -31.97720 -31.69769 -29.24254 -27.11516 -25.60826 -24.07401 -23.58893 -22.30081 -21.74990 -21.10132 -20.65414 -18.85835 -18.47496 -18.25175 -17.75729 -17.52612 -17.08499 -16.44343 -16.01602 -15.59246 -15.49941 -15.37908 -15.15433 -14.99785 -14.81710 -14.33591 -14.11307 -13.96173 -13.77213 -13.66408 -13.58540 -13.32825 -13.16939 -13.04315 -12.58907 -12.41057 -12.17654 -12.09238 -11.95118 -11.89676 -11.58561 -11.50352 -11.15514 -10.75628 -10.46744 -10.21507 -9.42164 -4.99248 0.23955 0.91667 1.18879 1.53479 1.69453 2.01729 2.03321 2.16801 3.16434 3.24625 3.51211 3.61831 3.63309 3.68295 3.81376 3.90176 3.92568 3.94403 4.12239 4.21006 4.23609 4.27664 4.31697 4.35822 4.41287 4.45049 4.48456 4.53857 4.57662 4.74962 4.78626 4.90728 4.96781 5.00563 5.03369 5.08616 5.12189 5.24515 5.28247 5.36532 5.41830 5.62593 6.27166 6.71667 6.84350 6.84487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.137 3.863 3 C -0.260 4.260 4 C 0.539 3.461 5 O -0.540 6.540 6 O -0.359 6.359 7 C 0.071 3.929 8 C -0.083 4.083 9 H 0.079 0.921 10 C -0.107 4.107 11 C -0.113 4.113 12 C 0.102 3.898 13 H 0.063 0.937 14 O -0.589 6.589 15 C -0.144 4.144 16 C -0.107 4.107 17 C -0.167 4.167 18 C 0.024 3.976 19 C -0.054 4.054 20 O -0.565 6.565 21 Si 0.802 3.198 22 N -0.516 5.516 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.394 0.606 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.409 0.591 40 H -0.300 1.300 41 H -0.291 1.291 42 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -4.860 1.391 5.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.015 3.985 3 C -0.268 4.268 4 C 0.387 3.613 5 O -0.433 6.433 6 O -0.275 6.275 7 C -0.003 4.003 8 C -0.101 4.101 9 H 0.097 0.903 10 C -0.145 4.145 11 C -0.151 4.151 12 C 0.043 3.957 13 H 0.081 0.919 14 O -0.398 6.398 15 C -0.181 4.181 16 C -0.144 4.144 17 C -0.190 4.190 18 C -0.086 4.086 19 C -0.164 4.164 20 O -0.376 6.376 21 Si 0.707 3.293 22 N -0.113 5.113 23 H 0.110 0.890 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.244 0.756 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.159 0.841 38 H 0.124 0.876 39 H 0.261 0.739 40 H -0.228 1.228 41 H -0.218 1.218 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 1.216 -4.324 1.299 4.676 hybrid contribution -1.064 0.463 0.090 1.164 sum 0.152 -3.861 1.390 4.106 Atomic orbital electron populations 1.20713 0.84625 1.05361 1.04684 1.20971 0.94676 0.84923 0.97915 1.19449 0.93934 0.89205 1.24185 1.20220 0.83392 0.85813 0.71827 1.90785 1.18550 1.84936 1.49002 1.86544 1.39750 1.17037 1.84203 1.23272 0.97324 0.76807 1.02867 1.21231 0.95472 0.94005 0.99403 0.90270 1.21488 0.96661 0.99146 0.97197 1.21464 0.97994 0.93105 1.02491 1.21879 0.87363 0.89538 0.96911 0.91901 1.86485 1.35133 1.21190 1.96987 1.22187 0.97227 1.00523 0.98208 1.21444 0.97809 0.91519 1.03641 1.21795 0.95949 0.93337 1.07934 1.20096 0.84982 0.93752 1.09729 1.24497 1.02061 0.98834 0.90981 1.86434 1.56443 1.57908 1.36826 0.94368 0.78645 0.80013 0.76239 1.41538 1.04887 1.09322 1.55529 0.89041 0.88102 0.89529 0.90850 0.90981 0.91778 0.91064 0.92036 0.91684 0.75601 0.89709 0.91690 0.90460 0.90218 0.84116 0.87638 0.73851 1.22767 1.21794 0.72150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.05 9.90 71.24 0.71 0.65 16 2 C 0.14 0.70 7.22 42.04 0.30 1.00 16 3 C -0.26 -2.76 6.33 -18.82 -0.12 -2.88 16 4 C 0.54 6.96 7.95 70.15 0.56 7.51 16 5 O -0.54 -8.24 14.67 19.67 0.29 -7.95 16 6 O -0.36 -3.86 9.67 -56.98 -0.55 -4.41 16 7 C 0.07 0.38 4.85 71.98 0.35 0.73 16 8 C -0.08 -0.17 2.44 -10.79 -0.03 -0.19 16 9 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 10 C -0.11 -0.31 5.10 30.59 0.16 -0.16 16 11 C -0.11 -0.40 5.57 30.60 0.17 -0.23 16 12 C 0.10 0.13 3.47 30.60 0.11 0.24 16 13 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 14 O -0.59 -2.01 13.32 -148.98 -1.98 -3.99 16 15 C -0.14 0.21 5.55 30.59 0.17 0.37 16 16 C -0.11 0.17 5.20 30.59 0.16 0.33 16 17 C -0.17 -1.52 9.47 23.62 0.22 -1.30 16 18 C 0.02 0.10 6.50 40.97 0.27 0.36 16 19 C -0.05 0.16 3.07 71.24 0.22 0.38 16 20 O -0.57 1.94 12.86 -148.98 -1.92 0.02 16 21 Si 0.80 -2.18 30.57 68.60 2.10 -0.08 16 22 N -0.52 -0.64 5.89 -170.37 -1.00 -1.64 16 23 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 24 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H 0.09 0.40 6.51 -2.39 -0.02 0.39 16 26 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.36 7.82 -2.39 -0.02 0.34 16 29 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.39 -1.97 9.08 -74.06 -0.67 -2.64 16 33 H 0.08 -0.37 8.14 -2.39 -0.02 -0.38 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.14 1.34 6.23 -2.91 -0.02 1.32 16 38 H 0.11 -0.91 7.96 -2.39 -0.02 -0.93 16 39 H 0.41 -5.79 8.74 -74.06 -0.65 -6.43 16 40 H -0.30 -1.82 7.11 99.48 0.71 -1.12 16 41 H -0.29 -1.08 7.11 99.48 0.71 -0.37 16 42 H 0.44 -2.36 8.96 -92.71 -0.83 -3.19 16 Total: 0.00 -22.84 344.94 -0.89 -23.73 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -1.06 Total: -12.51 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 3.24 Total: 6.83 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -1.00 Total: -1.64 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -4.16 Total: -16.33 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.10 Total: -0.08 kcal Total: -22.84 -0.89 -23.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9864948_16737258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.092 kcal (2) G-P(sol) polarization free energy of solvation -22.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds