Wall clock time and date at job start Sat Mar 6 2021 10:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99495 * 2 1 4 4 C 1.53003 * 112.85074 * 294.01290 * 3 2 1 5 5 F 1.39900 * 109.46917 * 195.95186 * 4 3 2 6 6 F 1.39900 * 109.46938 * 315.95250 * 4 3 2 7 7 F 1.39900 * 109.47008 * 75.95145 * 4 3 2 8 8 C 1.54057 * 113.68642 * 162.74386 * 3 2 1 9 9 C 1.53782 * 86.98409 * 270.87085 * 8 3 2 10 10 H 1.08999 * 113.61898 * 219.98207 * 9 8 3 11 11 C 1.52998 * 113.61693 * 89.16190 * 9 8 3 12 12 O 1.45198 * 109.46939 * 85.86304 * 11 9 8 13 13 C 1.34793 * 116.99610 * 180.02562 * 12 11 9 14 14 O 1.21544 * 120.00202 * 0.02562 * 13 12 11 15 15 C 1.47114 * 119.99511 * 179.97438 * 13 12 11 16 16 C 1.37841 * 127.01807 * 179.97438 * 15 13 12 17 17 C 1.50698 * 125.89986 * 0.07180 * 16 15 13 18 18 N 1.34632 * 108.20434 * 179.80771 * 16 15 13 19 19 C 1.36435 * 110.37979 * 0.38306 * 18 16 15 20 20 C 1.50697 * 125.45461 * 179.88005 * 19 18 16 21 21 O 1.42900 * 109.47349 * 64.71734 * 20 19 18 22 22 Si 1.86299 * 109.46864 * 184.71716 * 20 19 18 23 23 C 1.34432 * 109.08053 * 359.60959 * 19 18 16 24 24 C 1.53783 * 87.17552 * 334.57282 * 9 8 3 25 25 H 1.09003 * 109.46819 * 184.83060 * 1 2 3 26 26 H 1.09004 * 109.47102 * 304.82726 * 1 2 3 27 27 H 1.08995 * 109.47014 * 64.83044 * 1 2 3 28 28 H 1.08999 * 113.61015 * 156.37142 * 8 3 2 29 29 H 1.08991 * 113.69736 * 25.38722 * 8 3 2 30 30 H 1.09003 * 109.46822 * 325.86492 * 11 9 8 31 31 H 1.09004 * 109.47630 * 205.86598 * 11 9 8 32 32 H 1.08997 * 109.47040 * 90.00150 * 17 16 15 33 33 H 1.09005 * 109.46746 * 209.99813 * 17 16 15 34 34 H 1.09000 * 109.47037 * 329.99657 * 17 16 15 35 35 H 0.96997 * 124.81323 * 180.22501 * 18 16 15 36 36 H 1.08992 * 109.47194 * 304.71102 * 20 19 18 37 37 H 0.96700 * 113.99785 * 59.99852 * 21 20 19 38 38 H 1.48493 * 110.00320 * 180.02562 * 22 20 19 39 39 H 1.48502 * 110.00253 * 301.31831 * 22 20 19 40 40 H 1.08004 * 126.80567 * 180.24260 * 23 19 18 41 41 H 1.08997 * 113.61635 * 140.02255 * 24 9 8 42 42 H 1.09000 * 113.61376 * 270.92640 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7276 2.0817 -1.2879 5 9 2.6023 3.1697 -1.3781 6 9 1.9146 1.2403 -2.3899 7 9 0.4075 2.5445 -1.2733 8 6 3.4927 1.3231 0.4185 9 6 2.9982 1.4842 1.8657 10 1 3.5936 2.1810 2.4556 11 6 2.7567 0.1543 2.5826 12 8 4.0004 -0.3119 3.1693 13 6 3.9599 -1.4796 3.8415 14 8 2.9138 -2.0916 3.9342 15 6 5.1821 -2.0139 4.4619 16 6 5.3055 -3.1852 5.1780 17 6 4.1971 -4.1638 5.4693 18 7 6.5885 -3.3070 5.5674 19 6 7.3198 -2.2397 5.1342 20 6 8.7913 -2.0299 5.3823 21 8 9.5367 -3.0547 4.7219 22 14 9.3016 -0.3654 4.7192 23 6 6.5186 -1.4085 4.4455 24 6 1.7210 2.1086 1.2792 25 1 -0.3633 -1.0241 0.0865 26 1 -0.3633 0.5869 0.8436 27 1 -0.3633 0.4370 -0.9301 28 1 4.0413 2.1880 0.0458 29 1 4.0104 0.3814 0.2363 30 1 2.3935 -0.5834 1.8671 31 1 2.0144 0.2945 3.3684 32 1 4.1495 -4.9064 4.6729 33 1 4.3923 -4.6616 6.4192 34 1 3.2478 -3.6310 5.5266 35 1 6.9423 -4.0473 6.0847 36 1 8.9885 -2.0701 6.4535 37 1 9.4094 -3.0781 3.7636 38 1 10.7509 -0.1464 4.9571 39 1 9.0085 -0.2861 3.2655 40 1 6.8025 -0.4794 3.9736 41 1 0.8095 1.8006 1.7914 42 1 1.7862 3.1878 1.1414 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_9864948_17321610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:34:47 Heat of formation + Delta-G solvation = -232.681494 kcal Electronic energy + Delta-G solvation = -31966.792951 eV Core-core repulsion = 26887.010523 eV Total energy + Delta-G solvation = -5079.782428 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.24419 -48.77368 -48.72090 -42.51310 -41.59465 -40.63359 -37.94825 -37.59364 -36.77826 -32.99099 -32.41108 -30.64457 -29.10691 -28.22174 -27.48663 -26.75343 -25.70222 -23.90045 -23.15904 -21.59303 -20.89228 -20.41935 -19.75918 -19.53563 -19.27291 -19.20532 -18.06452 -17.45437 -17.15520 -16.96728 -16.79736 -16.49710 -16.45375 -15.82005 -15.65266 -15.59548 -15.52944 -15.32635 -15.18732 -15.09980 -14.89812 -14.82644 -14.71287 -14.51189 -14.19782 -13.96811 -13.91939 -13.65176 -13.44382 -13.25781 -13.10802 -13.02929 -12.73639 -12.34213 -12.22996 -11.98906 -11.91069 -11.62990 -11.59020 -11.39812 -10.84427 -10.77949 -10.02985 -9.28490 -4.84315 0.40313 1.11687 1.25503 1.54045 1.60756 1.70332 1.95196 2.10000 2.20359 2.33664 2.57810 2.64508 2.90439 3.32194 3.34934 3.38267 3.47945 3.54007 3.72044 3.82714 4.05325 4.11087 4.22969 4.27217 4.32354 4.39171 4.42644 4.48009 4.53890 4.54468 4.64440 4.65031 4.72445 4.74175 4.79705 4.84952 4.91029 5.05327 5.13798 5.48186 5.57278 5.72569 5.79792 6.38318 6.41666 6.87796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.349 6.349 3 C 0.031 3.969 4 C 0.434 3.566 5 F -0.174 7.174 6 F -0.189 7.189 7 F -0.184 7.184 8 C -0.112 4.112 9 C -0.091 4.091 10 H 0.125 0.875 11 C 0.078 3.922 12 O -0.350 6.350 13 C 0.540 3.460 14 O -0.546 6.546 15 C -0.256 4.256 16 C 0.131 3.869 17 C -0.099 4.099 18 N -0.521 5.521 19 C -0.014 4.014 20 C -0.057 4.057 21 O -0.550 6.550 22 Si 0.786 3.214 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.433 0.567 36 H 0.133 0.867 37 H 0.389 0.611 38 H -0.296 1.296 39 H -0.281 1.281 40 H 0.167 0.833 41 H 0.103 0.897 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 1.546 4.838 5.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.267 6.267 3 C -0.011 4.011 4 C 0.379 3.621 5 F -0.156 7.156 6 F -0.171 7.171 7 F -0.166 7.166 8 C -0.149 4.149 9 C -0.109 4.109 10 H 0.143 0.857 11 C 0.004 3.996 12 O -0.267 6.267 13 C 0.388 3.612 14 O -0.438 6.438 15 C -0.264 4.264 16 C 0.010 3.990 17 C -0.156 4.156 18 N -0.117 5.117 19 C -0.123 4.123 20 C -0.166 4.166 21 O -0.358 6.358 22 Si 0.690 3.310 23 C -0.162 4.162 24 C -0.171 4.171 25 H 0.126 0.874 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.273 0.727 36 H 0.151 0.849 37 H 0.238 0.762 38 H -0.224 1.224 39 H -0.207 1.207 40 H 0.185 0.815 41 H 0.121 0.879 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.429 1.455 4.922 5.328 hybrid contribution -0.405 -1.137 -1.274 1.755 sum 1.023 0.318 3.648 3.802 Atomic orbital electron populations 1.23252 0.78804 1.05123 1.01756 1.88086 1.22049 1.22701 1.93840 1.24322 1.00808 0.86219 0.89785 1.21493 0.74155 0.78703 0.87742 1.93172 1.69266 1.56509 1.96621 1.93185 1.94889 1.71339 1.57657 1.93181 1.36875 1.89682 1.96849 1.23396 0.90354 1.05738 0.95453 1.22050 0.98035 0.95714 0.95136 0.85674 1.23025 0.83587 0.95811 0.97172 1.86495 1.38520 1.37500 1.64154 1.20277 0.87657 0.78329 0.74928 1.90799 1.33228 1.60013 1.59790 1.19428 0.92736 1.00266 1.14001 1.20873 0.86223 0.95897 0.96047 1.20674 0.94646 0.96781 1.03510 1.41576 1.06649 1.20541 1.42984 1.20884 0.95037 0.90976 1.05449 1.24966 0.84565 1.03407 1.03660 1.86573 1.69072 1.54065 1.26082 0.93446 0.79045 0.78072 0.80463 1.22036 0.90669 1.00899 1.02640 1.23643 0.99746 1.01650 0.92011 0.87363 0.91130 0.93506 0.85169 0.89454 0.90639 0.90553 0.89545 0.88702 0.89572 0.72719 0.84916 0.76159 1.22408 1.20722 0.81548 0.87858 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.30 113.37 1.17 1.16 16 2 O -0.35 -1.03 8.35 -148.98 -1.24 -2.27 16 3 C 0.03 0.00 0.85 -10.17 -0.01 -0.01 16 4 C 0.43 1.29 2.52 71.98 0.18 1.47 16 5 F -0.17 -0.39 15.81 44.97 0.71 0.32 16 6 F -0.19 -1.39 17.10 44.97 0.77 -0.62 16 7 F -0.18 -0.62 15.40 44.97 0.69 0.07 16 8 C -0.11 0.23 6.92 31.22 0.22 0.45 16 9 C -0.09 0.34 4.20 -10.27 -0.04 0.29 16 10 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 11 C 0.08 0.13 5.07 71.98 0.37 0.49 16 12 O -0.35 -1.78 10.12 -57.04 -0.58 -2.36 16 13 C 0.54 4.41 7.95 70.15 0.56 4.96 16 14 O -0.55 -6.65 14.67 19.69 0.29 -6.36 16 15 C -0.26 -1.24 6.33 -18.82 -0.12 -1.36 16 16 C 0.13 0.16 7.22 42.03 0.30 0.47 16 17 C -0.10 0.13 9.90 71.24 0.71 0.84 16 18 N -0.52 1.40 5.89 -170.37 -1.00 0.39 16 19 C -0.01 0.03 6.46 40.97 0.26 0.29 16 20 C -0.06 0.24 3.08 71.24 0.22 0.45 16 21 O -0.55 0.62 12.88 -148.98 -1.92 -1.30 16 22 Si 0.79 -3.43 30.56 68.60 2.10 -1.34 16 23 C -0.14 -0.10 9.47 23.62 0.22 0.13 16 24 C -0.13 0.67 6.51 31.12 0.20 0.88 16 25 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.07 -0.30 6.55 -2.39 -0.02 -0.31 16 27 H 0.05 0.01 6.69 -2.39 -0.02 0.00 16 28 H 0.13 -0.65 7.02 -2.39 -0.02 -0.67 16 29 H 0.09 0.04 8.10 -2.39 -0.02 0.02 16 30 H 0.08 0.37 6.09 -2.39 -0.01 0.36 16 31 H 0.08 0.08 8.14 -2.38 -0.02 0.06 16 32 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 34 H 0.09 0.24 6.51 -2.39 -0.02 0.23 16 35 H 0.43 -3.22 8.96 -92.71 -0.83 -4.05 16 36 H 0.13 -0.91 7.96 -2.39 -0.02 -0.93 16 37 H 0.39 -2.19 8.70 -74.06 -0.64 -2.84 16 38 H -0.30 -0.82 7.11 99.48 0.71 -0.11 16 39 H -0.28 -0.06 7.11 99.48 0.71 0.65 16 40 H 0.17 -0.38 6.22 -2.91 -0.02 -0.39 16 41 H 0.10 -0.66 6.63 -2.39 -0.02 -0.68 16 42 H 0.13 -1.04 8.05 -2.39 -0.02 -1.06 16 Total: 0.00 -18.39 359.95 3.72 -14.67 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: -0.33 Total: -11.72 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.24 Total: 10.51 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -1.00 Total: 0.39 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -3.45 Total: -12.29 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 2.17 Total: -0.23 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.10 Total: -1.34 kcal Total: -18.39 3.72 -14.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_9864948_17321610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.009 kcal (2) G-P(sol) polarization free energy of solvation -18.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds