Wall clock time and date at job start Sat Mar 6 2021 11:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99826 * 2 1 4 4 H 1.08997 * 112.85102 * 341.19475 * 3 2 1 5 5 C 1.53789 * 113.61310 * 112.50476 * 3 2 1 6 6 C 1.53782 * 87.07873 * 139.97652 * 5 3 2 7 7 H 1.08998 * 113.61421 * 89.11831 * 6 5 3 8 8 N 1.46500 * 113.68929 * 220.00708 * 6 5 3 9 9 C 1.46500 * 120.00052 * 43.65564 * 8 6 5 10 10 C 1.34780 * 119.99702 * 223.65757 * 8 6 5 11 11 O 1.21278 * 120.00313 * 359.97438 * 10 8 6 12 12 C 1.50704 * 119.99745 * 179.97438 * 10 8 6 13 13 C 1.52993 * 109.47007 * 180.02562 * 12 10 8 14 14 O 1.42904 * 109.47374 * 180.02562 * 13 12 10 15 15 C 1.35901 * 117.00261 * 179.97438 * 14 13 12 16 16 C 1.38714 * 120.05320 * 179.97438 * 15 14 13 17 17 C 1.38159 * 119.94099 * 180.02562 * 16 15 14 18 18 C 1.50705 * 119.97135 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.46610 * 299.99360 * 18 17 16 20 20 Si 1.86301 * 109.47028 * 179.97438 * 18 17 16 21 21 C 1.38252 * 120.05970 * 359.97438 * 17 16 15 22 22 C 1.38290 * 120.10483 * 359.97438 * 21 17 16 23 23 C 1.38120 * 120.05788 * 359.76630 * 22 21 17 24 24 C 1.53779 * 87.08279 * 334.56805 * 6 5 3 25 25 H 1.08999 * 109.46938 * 59.99582 * 1 2 3 26 26 H 1.09006 * 109.47221 * 300.00163 * 1 2 3 27 27 H 1.08998 * 109.47323 * 180.02562 * 1 2 3 28 28 H 1.08997 * 113.60857 * 254.52435 * 5 3 2 29 29 H 1.08998 * 113.61172 * 25.42996 * 5 3 2 30 30 H 1.08993 * 109.46962 * 94.23601 * 9 8 6 31 31 H 1.09005 * 109.46848 * 214.23412 * 9 8 6 32 32 H 1.08995 * 109.46831 * 334.23219 * 9 8 6 33 33 H 1.09008 * 109.46758 * 299.99999 * 12 10 8 34 34 H 1.08999 * 109.47137 * 59.99895 * 12 10 8 35 35 H 1.09008 * 109.47135 * 299.99492 * 13 12 10 36 36 H 1.08999 * 109.47483 * 59.99831 * 13 12 10 37 37 H 1.07997 * 120.02879 * 0.02562 * 16 15 14 38 38 H 1.08997 * 109.47175 * 59.99277 * 18 17 16 39 39 H 0.96701 * 114.00324 * 299.99894 * 19 18 17 40 40 H 1.48498 * 110.00129 * 58.67947 * 20 18 17 41 41 H 1.48496 * 109.99971 * 179.97438 * 20 18 17 42 42 H 1.07990 * 119.94440 * 180.02562 * 21 17 16 43 43 H 1.08002 * 119.96437 * 180.02562 * 22 21 17 44 44 H 1.08001 * 120.02620 * 180.27557 * 23 22 21 45 45 H 1.08999 * 113.61307 * 270.88466 * 24 6 5 46 46 H 1.09002 * 113.61647 * 139.98469 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7535 1.6488 1.3018 6 6 3.8228 2.3180 0.4222 7 1 3.6223 3.3692 0.2149 8 7 5.1942 2.0797 0.8790 9 6 5.6007 0.7394 1.3085 10 6 6.0818 3.0936 0.9041 11 8 5.7454 4.2031 0.5481 12 6 7.4925 2.8486 1.3745 13 6 8.2871 4.1542 1.3053 14 8 9.6249 3.9218 1.7508 15 6 10.4689 4.9870 1.7511 16 6 11.7817 4.8329 2.1718 17 6 12.6377 5.9174 2.1716 18 6 14.0643 5.7507 2.6279 19 8 14.0809 5.2974 3.9830 20 14 14.9496 7.3855 2.5083 21 6 12.1869 7.1553 1.7523 22 6 10.8788 7.3111 1.3315 23 6 10.0207 6.2289 1.3247 24 6 3.3755 1.3718 -0.7045 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2141 2.3477 1.9411 29 1 3.1167 0.7739 1.8410 30 1 6.0525 0.2105 0.4694 31 1 6.3253 0.8217 2.1187 32 1 4.7269 0.1890 1.6570 33 1 7.4750 2.4883 2.4031 34 1 7.9639 2.1016 0.7358 35 1 8.3046 4.5149 0.2768 36 1 7.8156 4.9009 1.9442 37 1 12.1345 3.8660 2.4990 38 1 14.5654 5.0192 1.9940 39 1 13.6511 5.9005 4.6048 40 1 14.2576 8.4001 3.3431 41 1 16.3574 7.2347 2.9561 42 1 12.8576 8.0016 1.7526 43 1 10.5292 8.2791 1.0040 44 1 9.0005 6.3502 0.9918 45 1 3.9088 0.4212 -0.7137 46 1 3.3384 1.8470 -1.6848 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10122440_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:29:56 Heat of formation + Delta-G solvation = -82.119628 kcal Electronic energy + Delta-G solvation = -26431.112246 eV Core-core repulsion = 22482.456838 eV Total energy + Delta-G solvation = -3948.655408 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68465 -41.22847 -39.99265 -39.14183 -37.55344 -37.37016 -35.25951 -33.17977 -32.48793 -30.84530 -28.27384 -27.72634 -27.10294 -26.77405 -26.10755 -24.17932 -23.67843 -22.05379 -20.95579 -20.07907 -19.37916 -18.55018 -18.05940 -17.64573 -17.59575 -17.11940 -17.02376 -16.79694 -16.54892 -16.18924 -16.10460 -15.91343 -15.51849 -15.07855 -14.88139 -14.54860 -14.48267 -14.34027 -14.13373 -13.94805 -13.62294 -13.39808 -13.18780 -13.02576 -12.94537 -12.84401 -12.68358 -12.40745 -12.23390 -11.99730 -11.96688 -11.83207 -11.79989 -11.58455 -11.03459 -10.68241 -10.50378 -9.94687 -9.74441 -9.28735 -4.90228 0.18626 0.38150 1.29522 1.41015 1.58098 1.62678 1.95941 2.27396 2.64931 2.90026 3.36031 3.40643 3.47836 3.48926 3.61862 3.75615 3.76517 3.83756 3.84683 3.88844 4.08014 4.16833 4.22492 4.25293 4.28715 4.36495 4.49453 4.52428 4.53477 4.55275 4.60810 4.66090 4.66945 4.69145 4.73495 4.81640 4.88069 4.91008 4.96944 4.97653 5.06313 5.24891 5.36925 5.42776 5.44956 5.69061 6.20166 6.25339 6.32174 6.46811 6.96510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.063 3.937 4 H 0.102 0.898 5 C -0.161 4.161 6 C 0.117 3.883 7 H 0.109 0.891 8 N -0.599 5.599 9 C 0.061 3.939 10 C 0.519 3.481 11 O -0.582 6.582 12 C -0.131 4.131 13 C 0.076 3.924 14 O -0.324 6.324 15 C 0.116 3.884 16 C -0.140 4.140 17 C -0.082 4.082 18 C -0.087 4.087 19 O -0.548 6.548 20 Si 0.776 3.224 21 C -0.156 4.156 22 C -0.075 4.075 23 C -0.211 4.211 24 C -0.144 4.144 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.386 0.614 40 H -0.282 1.282 41 H -0.302 1.302 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.136 0.864 45 H 0.097 0.903 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 -1.301 -1.432 3.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.005 3.995 4 H 0.119 0.881 5 C -0.199 4.199 6 C 0.013 3.987 7 H 0.127 0.873 8 N -0.330 5.330 9 C -0.080 4.080 10 C 0.308 3.692 11 O -0.463 6.463 12 C -0.170 4.170 13 C 0.000 4.000 14 O -0.238 6.238 15 C 0.071 3.929 16 C -0.159 4.159 17 C -0.082 4.082 18 C -0.195 4.195 19 O -0.356 6.356 20 Si 0.681 3.319 21 C -0.174 4.174 22 C -0.093 4.093 23 C -0.230 4.230 24 C -0.182 4.182 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.235 0.765 40 H -0.208 1.208 41 H -0.230 1.230 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.154 0.846 45 H 0.115 0.885 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.962 -1.008 -1.399 2.612 hybrid contribution -1.071 -0.030 1.020 1.479 sum -3.033 -1.037 -0.379 3.228 Atomic orbital electron populations 1.22962 0.79771 1.03744 1.00793 1.87904 1.21211 1.27646 1.94673 1.23523 0.93987 0.85638 0.96401 0.88056 1.23954 0.96629 1.01522 0.97790 1.22283 0.80461 1.00119 0.95812 0.87317 1.47798 1.10470 1.10523 1.64198 1.22160 1.02562 0.81826 1.01455 1.20682 0.87652 0.83839 0.77003 1.90709 1.80502 1.24807 1.50240 1.21476 0.90473 0.98811 1.06275 1.22423 0.79370 0.98018 1.00154 1.85951 1.22180 1.33788 1.81894 1.19151 0.90422 0.86712 0.96622 1.20315 0.90831 1.00284 1.04492 1.20176 0.96163 0.93140 0.98765 1.25349 0.96042 1.13431 0.84658 1.86569 1.81310 1.50526 1.17221 0.93906 0.74824 0.72877 0.90342 1.21175 0.96774 0.96862 1.02574 1.21246 0.92767 0.99132 0.96166 1.21550 1.02043 0.92811 1.06562 1.23661 0.95497 1.00525 0.98557 0.93151 0.93220 0.88848 0.90213 0.87982 0.90896 0.88861 0.89507 0.85687 0.85716 0.91577 0.91734 0.85415 0.85632 0.76457 1.20836 1.23027 0.83433 0.82943 0.84633 0.88474 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 10.85 113.37 1.23 1.17 16 2 O -0.40 -0.73 10.71 -148.98 -1.60 -2.33 16 3 C 0.06 -0.08 4.31 31.12 0.13 0.05 16 4 H 0.10 -0.35 7.87 -2.39 -0.02 -0.37 16 5 C -0.16 0.34 7.41 31.12 0.23 0.57 16 6 C 0.12 0.00 4.23 45.52 0.19 0.19 16 7 H 0.11 0.37 7.17 -2.39 -0.02 0.36 16 8 N -0.60 0.52 3.09 -819.65 -2.53 -2.01 16 9 C 0.06 -0.44 9.17 127.77 1.17 0.73 16 10 C 0.52 1.49 7.67 87.66 0.67 2.16 16 11 O -0.58 -6.34 15.44 -3.02 -0.05 -6.39 16 12 C -0.13 0.29 4.68 29.85 0.14 0.43 16 13 C 0.08 0.17 4.03 71.98 0.29 0.46 16 14 O -0.32 -1.67 10.14 -92.43 -0.94 -2.60 16 15 C 0.12 0.66 6.69 22.51 0.15 0.81 16 16 C -0.14 -0.73 9.55 22.36 0.21 -0.52 16 17 C -0.08 -0.18 5.39 -19.88 -0.11 -0.28 16 18 C -0.09 -0.06 2.82 71.24 0.20 0.15 16 19 O -0.55 -2.13 12.77 -148.98 -1.90 -4.03 16 20 Si 0.78 -1.27 29.79 68.60 2.04 0.77 16 21 C -0.16 0.00 8.67 22.29 0.19 0.20 16 22 C -0.08 -0.04 10.04 22.25 0.22 0.19 16 23 C -0.21 -0.72 9.04 22.36 0.20 -0.52 16 24 C -0.14 0.17 7.50 31.12 0.23 0.40 16 25 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 27 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.10 -0.28 5.99 -2.39 -0.01 -0.30 16 30 H 0.07 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.09 -0.96 6.61 -2.38 -0.02 -0.98 16 32 H 0.09 -0.66 5.79 -2.39 -0.01 -0.67 16 33 H 0.13 -0.72 7.41 -2.38 -0.02 -0.74 16 34 H 0.12 -0.69 8.11 -2.39 -0.02 -0.71 16 35 H 0.07 0.22 7.60 -2.38 -0.02 0.21 16 36 H 0.06 0.23 7.64 -2.39 -0.02 0.21 16 37 H 0.13 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 39 H 0.39 -0.65 8.70 -74.06 -0.64 -1.29 16 40 H -0.28 -0.56 7.11 99.48 0.71 0.15 16 41 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 42 H 0.15 -0.67 4.87 -2.92 -0.01 -0.69 16 43 H 0.15 -0.68 8.06 -2.91 -0.02 -0.71 16 44 H 0.14 0.28 6.30 -2.91 -0.02 0.26 16 45 H 0.10 -0.12 7.46 -2.39 -0.02 -0.14 16 46 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: 0.00 -18.93 372.65 0.78 -18.15 By element: Atomic # 1 Polarization: -8.13 SS G_CDS: 0.38 Total: -7.75 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.37 Total: 6.19 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -2.53 Total: -2.01 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -4.48 Total: -15.35 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.04 Total: 0.77 kcal Total: -18.93 0.78 -18.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.974 kcal (2) G-P(sol) polarization free energy of solvation -18.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds