Wall clock time and date at job start Sat Mar 6 2021 11:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00078 * 2 1 4 4 H 1.09001 * 112.90470 * 341.24822 * 3 2 1 5 5 C 1.53775 * 113.61550 * 112.49998 * 3 2 1 6 6 C 1.53776 * 87.08081 * 139.97864 * 5 3 2 7 7 H 1.09005 * 113.69023 * 89.13180 * 6 5 3 8 8 N 1.46506 * 113.61494 * 220.01577 * 6 5 3 9 9 C 1.46492 * 119.99800 * 37.50136 * 8 6 5 10 10 C 1.34773 * 119.99968 * 217.49680 * 8 6 5 11 11 O 1.21283 * 120.00360 * 359.73034 * 10 8 6 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 8 6 13 13 O 1.42894 * 109.47263 * 179.72605 * 12 10 8 14 14 C 1.35898 * 116.99879 * 179.97438 * 13 12 10 15 15 C 1.38717 * 120.05452 * 179.72693 * 14 13 12 16 16 N 1.48002 * 120.02813 * 0.02562 * 15 14 13 17 17 O 1.21804 * 119.99988 * 180.02562 * 16 15 14 18 18 O 1.21795 * 119.99928 * 0.02562 * 16 15 14 19 19 C 1.38172 * 119.94292 * 179.75036 * 15 14 13 20 20 C 1.38251 * 120.05191 * 0.52229 * 19 15 14 21 21 C 1.50695 * 119.94057 * 179.72714 * 20 19 15 22 22 O 1.42904 * 109.47165 * 300.02365 * 21 20 19 23 23 Si 1.86296 * 109.47132 * 180.02562 * 21 20 19 24 24 C 1.38283 * 120.11160 * 359.74684 * 20 19 15 25 25 C 1.38122 * 120.05949 * 359.97438 * 24 20 19 26 26 C 1.53772 * 87.08358 * 334.56948 * 6 5 3 27 27 H 1.08995 * 109.47667 * 300.00457 * 1 2 3 28 28 H 1.09005 * 109.47036 * 60.00179 * 1 2 3 29 29 H 1.09004 * 109.47581 * 180.02562 * 1 2 3 30 30 H 1.09007 * 113.61172 * 25.43300 * 5 3 2 31 31 H 1.09001 * 113.61693 * 254.53123 * 5 3 2 32 32 H 1.09001 * 109.47443 * 269.99328 * 9 8 6 33 33 H 1.08999 * 109.47479 * 30.00306 * 9 8 6 34 34 H 1.09006 * 109.47080 * 149.99714 * 9 8 6 35 35 H 1.09001 * 109.46564 * 299.73030 * 12 10 8 36 36 H 1.08998 * 109.47012 * 59.72084 * 12 10 8 37 37 H 1.07992 * 119.97274 * 180.27502 * 19 15 14 38 38 H 1.09001 * 109.47356 * 60.02256 * 21 20 19 39 39 H 0.96701 * 114.00014 * 300.00153 * 22 21 20 40 40 H 1.48490 * 110.00304 * 58.67973 * 23 21 20 41 41 H 1.48499 * 110.00239 * 180.02562 * 23 21 20 42 42 H 1.08007 * 119.96695 * 179.97438 * 24 20 19 43 43 H 1.07997 * 120.02979 * 180.02562 * 25 24 20 44 44 H 1.08992 * 113.61782 * 139.98357 * 26 6 5 45 45 H 1.09002 * 113.61405 * 270.79764 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 -0.3228 5 6 2.7534 1.6489 1.3017 6 6 3.8227 2.3181 0.4222 7 1 3.6236 3.3694 0.2143 8 7 5.1934 2.0785 0.8804 9 6 5.5625 0.7744 1.4364 10 6 6.1149 3.0579 0.7904 11 8 5.8106 4.1360 0.3255 12 6 7.5251 2.8114 1.2612 13 8 8.3082 3.9891 1.0572 14 6 9.6133 3.9348 1.4320 15 6 10.4329 5.0403 1.2573 16 7 9.8866 6.2807 0.6629 17 8 10.6068 7.2509 0.5092 18 8 8.7169 6.3314 0.3273 19 6 11.7582 4.9842 1.6439 20 6 12.2703 3.8241 2.1945 21 6 13.7177 3.7637 2.6097 22 8 14.5497 4.0043 1.4730 23 14 14.0935 2.0782 3.3086 24 6 11.4567 2.7189 2.3646 25 6 10.1297 2.7718 1.9850 26 6 3.3755 1.3719 -0.7045 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1165 0.7740 1.8410 31 1 2.2140 2.3477 1.9411 32 1 5.3974 0.7788 2.5138 33 1 4.9504 -0.0024 0.9781 34 1 6.6146 0.5764 1.2309 35 1 7.5153 2.5607 2.3220 36 1 7.9574 1.9853 0.6967 37 1 12.3956 5.8460 1.5122 38 1 13.9102 4.5227 3.3680 39 1 14.4314 3.3655 0.7567 40 1 13.8049 1.0321 2.2950 41 1 15.5178 2.0059 3.7224 42 1 11.8593 1.8137 2.7946 43 1 9.4947 1.9085 2.1184 44 1 3.3385 1.8470 -1.6847 45 1 3.9098 0.4218 -0.7146 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10122440_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:30:17 Heat of formation + Delta-G solvation = -70.663613 kcal Electronic energy + Delta-G solvation = -31378.410149 eV Core-core repulsion = 26754.772695 eV Total energy + Delta-G solvation = -4623.637454 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.29916 -41.91454 -41.30135 -40.09301 -39.28625 -37.63093 -37.57089 -37.37403 -35.26268 -33.47411 -32.26236 -30.07492 -28.20693 -27.82538 -27.61871 -26.73885 -26.63105 -25.08792 -23.85666 -22.81507 -21.24401 -20.57345 -20.15879 -19.78405 -19.21137 -18.64655 -18.36079 -18.32123 -17.96639 -17.71099 -17.18181 -16.91044 -16.43775 -16.34800 -16.18917 -16.04817 -15.79301 -15.56072 -15.12851 -14.81009 -14.63544 -14.29211 -14.01308 -13.85631 -13.68463 -13.50443 -13.28978 -13.20741 -13.08892 -12.71602 -12.71041 -12.40936 -12.38707 -12.28644 -12.24579 -12.21029 -11.92514 -11.82333 -11.79896 -10.96982 -10.83934 -10.75166 -10.48731 -9.81046 -9.74250 -4.91090 -1.31653 -0.24577 0.15509 0.35229 1.15251 1.27013 1.37677 1.61455 2.02409 2.05137 2.12897 2.89149 3.09694 3.15424 3.31493 3.40564 3.44240 3.49046 3.52045 3.71620 3.75992 3.77401 3.82698 3.85675 3.94808 4.23868 4.28344 4.30429 4.39369 4.50308 4.54720 4.55958 4.63540 4.65118 4.69026 4.70279 4.82949 4.83963 4.90118 4.93720 4.95890 5.06587 5.07496 5.18450 5.43506 5.75725 6.20331 6.25522 6.41406 6.45176 6.98958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.062 3.938 4 H 0.097 0.903 5 C -0.152 4.152 6 C 0.118 3.882 7 H 0.100 0.900 8 N -0.595 5.595 9 C 0.056 3.944 10 C 0.506 3.494 11 O -0.567 6.567 12 C 0.028 3.972 13 O -0.292 6.292 14 C 0.193 3.807 15 C -0.104 4.104 16 N 0.034 4.966 17 O -0.202 6.202 18 O -0.176 6.176 19 C -0.003 4.003 20 C -0.147 4.147 21 C -0.091 4.091 22 O -0.551 6.551 23 Si 0.790 3.210 24 C -0.003 4.003 25 C -0.189 4.189 26 C -0.145 4.145 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.389 0.611 40 H -0.260 1.260 41 H -0.310 1.310 42 H 0.190 0.810 43 H 0.206 0.794 44 H 0.072 0.928 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 -14.371 7.129 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.003 3.997 4 H 0.115 0.885 5 C -0.191 4.191 6 C 0.014 3.986 7 H 0.118 0.882 8 N -0.328 5.328 9 C -0.085 4.085 10 C 0.293 3.707 11 O -0.444 6.444 12 C -0.049 4.049 13 O -0.203 6.203 14 C 0.143 3.857 15 C -0.190 4.190 16 N 0.544 4.456 17 O -0.409 6.409 18 O -0.389 6.389 19 C -0.022 4.022 20 C -0.149 4.149 21 C -0.198 4.198 22 O -0.359 6.359 23 Si 0.693 3.307 24 C -0.020 4.020 25 C -0.207 4.207 26 C -0.184 4.184 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.238 0.762 40 H -0.186 1.186 41 H -0.238 1.238 42 H 0.207 0.793 43 H 0.223 0.777 44 H 0.091 0.909 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.136 -14.582 7.339 16.325 hybrid contribution -0.271 1.511 -1.735 2.316 sum -0.407 -13.070 5.605 14.227 Atomic orbital electron populations 1.22956 0.79832 1.03760 1.00722 1.87892 1.21118 1.27465 1.94684 1.23504 0.93913 0.85629 0.96651 0.88498 1.23895 0.96139 1.01526 0.97493 1.22239 0.80499 0.99817 0.96041 0.88204 1.47726 1.09091 1.13941 1.62026 1.22297 1.03555 0.82447 1.00221 1.20586 0.87505 0.83926 0.78636 1.90827 1.81247 1.26580 1.45790 1.23170 0.88157 0.87301 1.06225 1.86471 1.17746 1.38888 1.77148 1.18992 0.83393 0.92529 0.90765 1.20869 0.96417 0.84898 1.16793 1.43911 1.00618 1.02797 0.98283 1.94501 1.57796 1.28254 1.60397 1.94682 1.00782 1.90077 1.53353 1.20848 0.89927 1.00354 0.91083 1.20385 0.98296 0.92865 1.03321 1.25527 0.85359 1.16796 0.92117 1.86635 1.63601 1.56848 1.28861 0.94168 0.81353 0.70845 0.84382 1.21720 0.92005 0.98025 0.90290 1.21804 0.98116 0.96888 1.03893 1.23680 0.95604 1.00653 0.98416 0.93174 0.93418 0.88730 0.87324 0.90248 0.89971 0.89651 0.87757 0.83752 0.84049 0.83189 0.85499 0.76150 1.18596 1.23814 0.79348 0.77719 0.90931 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.39 -0.25 10.71 -148.98 -1.60 -1.84 16 3 C 0.06 -0.12 4.31 31.12 0.13 0.01 16 4 H 0.10 -0.30 7.87 -2.39 -0.02 -0.32 16 5 C -0.15 0.57 7.34 31.12 0.23 0.80 16 6 C 0.12 -0.06 4.21 45.51 0.19 0.13 16 7 H 0.10 0.49 7.23 -2.38 -0.02 0.47 16 8 N -0.59 1.97 3.08 -819.66 -2.53 -0.56 16 9 C 0.06 -0.73 8.85 127.77 1.13 0.40 16 10 C 0.51 1.45 7.75 87.66 0.68 2.13 16 11 O -0.57 -9.13 15.98 16.00 0.26 -8.87 16 12 C 0.03 -0.18 3.78 71.24 0.27 0.09 16 13 O -0.29 -1.45 7.68 -63.38 -0.49 -1.94 16 14 C 0.19 0.11 6.67 22.51 0.15 0.26 16 15 C -0.10 -0.73 6.87 36.48 0.25 -0.48 16 16 N 0.03 0.58 4.45 -46.24 -0.21 0.37 16 17 O -0.20 -3.81 18.45 18.88 0.35 -3.46 16 18 O -0.18 -3.88 17.24 25.61 0.44 -3.44 16 19 C 0.00 0.00 9.11 22.26 0.20 0.20 16 20 C -0.15 0.90 5.39 -19.85 -0.11 0.79 16 21 C -0.09 0.60 2.82 71.23 0.20 0.80 16 22 O -0.55 0.87 12.77 -148.98 -1.90 -1.03 16 23 Si 0.79 -8.25 29.78 68.60 2.04 -6.21 16 24 C 0.00 0.04 8.66 22.25 0.19 0.23 16 25 C -0.19 2.10 9.04 22.37 0.20 2.31 16 26 C -0.14 0.25 7.45 31.12 0.23 0.48 16 27 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 29 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.11 -0.64 6.72 -2.38 -0.02 -0.66 16 31 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.08 -1.29 8.14 -2.39 -0.02 -1.31 16 33 H 0.08 -1.08 6.34 -2.39 -0.02 -1.09 16 34 H 0.10 -2.02 6.43 -2.38 -0.02 -2.04 16 35 H 0.15 -2.19 7.63 -2.39 -0.02 -2.21 16 36 H 0.14 -2.11 6.91 -2.39 -0.02 -2.13 16 37 H 0.15 0.55 7.61 -2.91 -0.02 0.53 16 38 H 0.13 -0.91 7.96 -2.39 -0.02 -0.93 16 39 H 0.39 -3.07 8.70 -74.06 -0.64 -3.72 16 40 H -0.26 2.43 7.11 99.48 0.71 3.14 16 41 H -0.31 0.08 7.11 99.48 0.71 0.78 16 42 H 0.19 -3.76 4.87 -2.91 -0.01 -3.78 16 43 H 0.21 -4.37 6.30 -2.91 -0.02 -4.38 16 44 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.10 -0.32 6.92 -2.39 -0.02 -0.34 16 Total: 0.00 -38.98 377.81 2.00 -36.98 By element: Atomic # 1 Polarization: -19.75 SS G_CDS: 0.45 Total: -19.30 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.19 Total: 9.30 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: -2.73 Total: -0.18 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -2.94 Total: -20.59 kcal Atomic # 14 Polarization: -8.25 SS G_CDS: 2.04 Total: -6.21 kcal Total: -38.98 2.00 -36.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10122440_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.686 kcal (2) G-P(sol) polarization free energy of solvation -38.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds