Wall clock time and date at job start Sat Mar 6 2021 12:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38335 * 119.85232 * 2 1 4 4 C 1.37979 * 120.14369 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.07498 * 179.97438 * 4 3 2 6 6 C 1.39562 * 119.85385 * 359.95356 * 4 3 2 7 7 C 1.47844 * 120.14334 * 179.97438 * 6 4 3 8 8 O 1.21552 * 119.99998 * 6.29108 * 7 6 4 9 9 N 1.34779 * 119.99488 * 186.29633 * 7 6 4 10 10 C 1.46502 * 119.99668 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47148 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47148 * 180.02562 * 11 10 9 13 13 C 1.34697 * 126.73839 * 124.99956 * 12 11 10 14 14 N 1.30518 * 108.35209 * 179.97438 * 13 12 11 15 15 C 1.34191 * 109.79714 * 0.02562 * 14 13 12 16 16 C 1.43197 * 125.67473 * 180.02562 * 15 14 13 17 17 N 8.60738 * 164.97560 * 327.23264 * 7 1 2 18 18 N 1.31730 * 108.64651 * 359.75326 * 15 14 13 19 19 C 1.39594 * 119.71053 * 0.04655 * 6 4 3 20 20 C 1.37940 * 119.85184 * 359.97264 * 19 6 4 21 21 C 1.50696 * 119.92577 * 179.97438 * 20 19 6 22 22 O 1.42898 * 109.47258 * 255.00143 * 21 20 19 23 23 Si 1.86300 * 109.47404 * 15.00135 * 21 20 19 24 24 H 1.48494 * 109.47119 * 300.00441 * 23 21 20 25 25 H 1.48500 * 109.46890 * 60.00124 * 23 21 20 26 26 H 1.48496 * 109.47584 * 179.97438 * 23 21 20 27 27 H 1.09003 * 109.46597 * 270.02394 * 1 2 3 28 28 H 1.08999 * 109.47190 * 30.02739 * 1 2 3 29 29 H 1.08998 * 109.47136 * 150.02546 * 1 2 3 30 30 H 1.08001 * 119.92951 * 359.96901 * 3 2 1 31 31 H 1.08997 * 109.47238 * 96.58761 * 5 4 3 32 32 H 1.08999 * 109.47209 * 216.59538 * 5 4 3 33 33 H 1.09003 * 109.46707 * 336.59038 * 5 4 3 34 34 H 0.96991 * 120.00605 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47244 * 299.99878 * 10 9 7 36 36 H 1.09003 * 109.47258 * 59.99549 * 10 9 7 37 37 H 1.08998 * 109.47377 * 299.99762 * 11 10 9 38 38 H 1.09003 * 109.47238 * 59.99747 * 11 10 9 39 39 H 1.07999 * 125.81980 * 359.94650 * 13 12 11 40 40 H 1.07998 * 120.07204 * 180.25819 * 19 6 4 41 41 H 1.09000 * 109.47237 * 135.00202 * 21 20 19 42 42 H 0.96700 * 114.00489 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1998 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.3240 2.5148 -0.0001 6 6 4.2763 -0.0001 0.0021 7 6 5.7547 0.0000 0.0021 8 8 6.3624 1.0465 0.1161 9 7 6.4285 -1.1604 -0.1245 10 6 7.8936 -1.1604 -0.1239 11 6 8.4036 -2.5944 -0.2798 12 7 9.8686 -2.5946 -0.2786 13 6 10.6736 -3.3059 0.5340 14 7 11.9124 -3.0352 0.2249 15 6 11.9463 -2.1511 -0.7840 16 6 13.1303 -1.6206 -1.3901 17 7 14.0674 -1.8763 1.2127 18 7 10.7092 -1.8568 -1.1279 19 6 3.5753 -1.2072 0.0020 20 6 2.1959 -1.2002 0.0011 21 6 1.4374 -2.5024 0.0005 22 8 0.8973 -2.7384 -1.3012 23 14 2.5906 -3.8929 0.4558 24 1 3.6959 -3.9634 -0.5333 25 1 3.1518 -3.6477 1.8086 26 1 1.8431 -5.1761 0.4559 27 1 -0.3632 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6521 2.1330 -0.0005 31 1 4.6064 2.7722 1.0207 32 1 5.2208 2.4199 -0.6123 33 1 3.6860 3.2982 -0.4091 34 1 5.9436 -1.9955 -0.2152 35 1 8.2573 -0.5530 -0.9527 36 1 8.2566 -0.7463 0.8167 37 1 8.0399 -3.2016 0.5492 38 1 8.0405 -3.0090 -1.2203 39 1 10.3492 -3.9842 1.3093 40 1 4.1117 -2.1445 0.0074 41 1 0.6261 -2.4506 0.7266 42 1 0.3954 -3.5616 -1.3755 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10153632_9599494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 12:05:22 Heat of formation + Delta-G solvation = 404.972278 kcal Electronic energy + Delta-G solvation = -26689.463897 eV Core-core repulsion = 22766.568437 eV Total energy + Delta-G solvation = -3922.895460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.140 amu Computer time = 17.91 seconds Orbital eigenvalues (eV) -43.80325 -41.78307 -40.13940 -37.76511 -37.33627 -35.42517 -34.48172 -33.55230 -33.34572 -31.09867 -29.35212 -28.59782 -27.31409 -25.55921 -24.72239 -23.73437 -23.49732 -23.05012 -22.42617 -21.07706 -20.89134 -18.96572 -18.47297 -18.21039 -17.63438 -17.34406 -16.91445 -16.67544 -16.45772 -16.33565 -16.06160 -15.64486 -15.38702 -14.95813 -14.75483 -14.65223 -14.34063 -14.18914 -13.99910 -13.77377 -13.41771 -13.12733 -13.06594 -12.86500 -12.81622 -12.72025 -12.63616 -12.14800 -11.90162 -11.86669 -11.79832 -11.71336 -11.58425 -10.94161 -10.52652 -10.28910 -9.94562 -9.66439 -8.78725 -7.93860 -1.90246 -1.45647 -0.33518 0.11686 0.17557 0.53755 0.77917 1.12516 1.43846 1.45311 1.48018 1.60704 1.83895 1.88158 2.54740 2.58013 2.87856 3.22561 3.31354 3.43951 3.49917 3.55976 3.61886 3.76204 3.88074 3.91154 4.08727 4.15402 4.18390 4.30738 4.43033 4.47818 4.49059 4.49936 4.54621 4.64774 4.71170 4.80673 4.86717 4.92163 5.03790 5.13767 5.18223 5.27035 5.41950 5.46444 5.76102 6.16353 6.18228 6.82833 6.91419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.028 4.028 3 C -0.137 4.137 4 C -0.027 4.027 5 C -0.119 4.119 6 C -0.162 4.162 7 C 0.561 3.439 8 O -0.558 6.558 9 N -0.715 5.715 10 C 0.114 3.886 11 C 0.109 3.891 12 N -0.344 5.344 13 C 0.274 3.726 14 N -0.510 5.510 15 C -0.029 4.029 16 C 0.690 3.310 17 N -0.528 5.528 18 N -0.220 5.220 19 C -0.079 4.079 20 C -0.102 4.102 21 C -0.084 4.084 22 O -0.558 6.558 23 Si 0.961 3.039 24 H -0.245 1.245 25 H -0.255 1.255 26 H -0.255 1.255 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.416 0.584 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.165 0.835 38 H 0.133 0.867 39 H 0.277 0.723 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 -6.322 -3.783 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.029 4.029 3 C -0.155 4.155 4 C -0.028 4.028 5 C -0.175 4.175 6 C -0.165 4.165 7 C 0.351 3.649 8 O -0.437 6.437 9 N -0.370 5.370 10 C -0.011 4.011 11 C -0.012 4.012 12 N -0.137 5.137 13 C -0.021 4.021 14 N -0.237 5.237 15 C -0.296 4.296 16 C 0.614 3.386 17 N -0.461 5.461 18 N -0.059 5.059 19 C -0.098 4.098 20 C -0.102 4.102 21 C -0.193 4.193 22 O -0.367 6.367 23 Si 0.784 3.216 24 H -0.169 1.169 25 H -0.179 1.179 26 H -0.179 1.179 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.182 0.818 38 H 0.151 0.849 39 H 0.292 0.708 40 H 0.160 0.840 41 H 0.112 0.888 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.080 -5.509 -3.116 11.902 hybrid contribution -1.796 -0.861 0.972 2.216 sum -11.876 -6.370 -2.144 13.646 Atomic orbital electron populations 1.21031 0.89043 1.04494 1.03654 1.20316 0.97807 0.91888 0.92849 1.21224 0.92705 0.99089 1.02471 1.20228 0.94169 0.94842 0.93518 1.21022 1.00396 0.93013 1.03042 1.19539 0.91755 0.94449 1.10753 1.18413 0.87575 0.83355 0.75573 1.90775 1.70590 1.32028 1.50330 1.45488 1.06344 1.09849 1.75283 1.21366 0.80119 0.96617 1.03022 1.22596 0.71065 0.97879 1.09634 1.51065 1.09218 1.29538 1.23910 1.27364 0.84063 0.95233 0.95434 1.71257 1.22690 1.17284 1.12456 1.27168 0.98863 1.03564 0.99972 1.84457 0.68788 0.21530 0.63818 1.99873 0.92527 1.04423 1.49317 1.78649 1.00108 1.14936 1.12179 1.21274 0.94113 0.97048 0.97320 1.19331 0.92711 0.94832 1.03370 1.24767 1.04108 1.00954 0.89519 1.86483 1.74073 1.47454 1.28715 0.85545 0.79483 0.76553 0.80056 1.16898 1.17908 1.17904 0.89353 0.90566 0.89678 0.83460 0.91149 0.90603 0.90625 0.74583 0.91469 0.91755 0.81791 0.84935 0.70751 0.84035 0.88820 0.75126 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 319. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.63 9.32 71.24 0.66 1.29 16 2 C -0.03 0.03 5.89 -19.81 -0.12 -0.09 16 3 C -0.14 -0.07 9.31 22.23 0.21 0.14 16 4 C -0.03 -0.10 5.91 -19.61 -0.12 -0.21 16 5 C -0.12 -0.52 8.73 71.24 0.62 0.10 16 6 C -0.16 -0.40 5.87 -20.09 -0.12 -0.52 16 7 C 0.56 2.01 7.70 86.79 0.67 2.68 16 8 O -0.56 -6.19 13.35 -3.88 -0.05 -6.24 16 9 N -0.71 3.50 5.51 -465.97 -2.57 0.93 16 10 C 0.11 -0.60 5.89 86.38 0.51 -0.09 16 11 C 0.11 -1.44 6.66 86.38 0.58 -0.86 16 12 N -0.34 1.92 3.70 -352.08 -1.30 0.62 16 13 C 0.27 -1.20 12.61 180.37 2.27 1.07 16 14 N -0.51 -2.53 9.36 -197.52 -1.85 -4.38 16 15 C -0.03 -0.05 7.36 135.86 1.00 0.95 16 16 C 0.69 -3.11 23.81 69.07 1.64 -1.47 16 17 N -0.53 -10.87 25.55 37.02 0.95 -9.92 16 18 N -0.22 -0.03 12.62 -55.96 -0.71 -0.73 16 19 C -0.08 0.15 8.13 22.53 0.18 0.33 16 20 C -0.10 0.18 5.29 -19.90 -0.11 0.07 16 21 C -0.08 0.56 1.87 71.23 0.13 0.69 16 22 O -0.56 3.32 11.89 -148.98 -1.77 1.55 16 23 Si 0.96 -8.10 25.48 68.60 1.75 -6.35 16 24 H -0.25 2.27 6.73 99.48 0.67 2.94 16 25 H -0.26 1.76 7.11 99.48 0.71 2.47 16 26 H -0.26 1.92 7.11 99.48 0.71 2.63 16 27 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H 0.08 -0.43 8.08 -2.39 -0.02 -0.45 16 29 H 0.08 -0.43 6.18 -2.39 -0.01 -0.45 16 30 H 0.15 -0.45 8.06 -2.91 -0.02 -0.48 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.65 5.86 -2.39 -0.01 0.63 16 33 H 0.07 0.06 8.04 -2.39 -0.02 0.04 16 34 H 0.42 -4.81 6.55 -92.71 -0.61 -5.42 16 35 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 -0.09 8.14 -2.39 -0.02 -0.10 16 37 H 0.16 -3.54 8.09 -2.39 -0.02 -3.56 16 38 H 0.13 -2.21 8.14 -2.39 -0.02 -2.23 16 39 H 0.28 -4.07 8.06 -2.91 -0.02 -4.09 16 40 H 0.14 -1.07 3.28 -2.91 -0.01 -1.08 16 41 H 0.09 -0.94 7.38 -2.39 -0.02 -0.95 16 42 H 0.40 -5.78 8.74 -74.06 -0.65 -6.43 16 Total: 0.00 -40.35 371.76 3.04 -37.31 By element: Atomic # 1 Polarization: -17.44 SS G_CDS: 0.57 Total: -16.87 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 8.02 Total: 4.08 kcal Atomic # 7 Polarization: -8.00 SS G_CDS: -5.48 Total: -13.48 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -1.82 Total: -4.70 kcal Atomic # 14 Polarization: -8.10 SS G_CDS: 1.75 Total: -6.35 kcal Total: -40.35 3.04 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10153632_9599494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 442.278 kcal (2) G-P(sol) polarization free energy of solvation -40.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 401.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 404.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.91 seconds