Wall clock time and date at job start Sat Mar 6 2021 10:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35894 * 116.99969 * 2 1 4 4 C 1.38738 * 120.05462 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94553 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.05230 * 0.28402 * 5 4 3 7 7 C 1.50698 * 119.94148 * 179.70090 * 6 5 4 8 8 N 1.46500 * 109.47336 * 89.99376 * 7 6 5 9 9 C 1.34772 * 120.00329 * 270.00187 * 8 7 6 10 10 O 1.21696 * 119.99975 * 359.63152 * 9 8 7 11 11 C 1.46674 * 120.00190 * 179.63676 * 9 8 7 12 12 C 1.37875 * 126.23200 * 204.60583 * 11 9 8 13 13 C 1.39843 * 107.08299 * 179.97438 * 12 11 9 14 14 C 1.35448 * 107.86509 * 359.97438 * 13 12 11 15 15 C 1.50700 * 125.56313 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47414 * 215.02800 * 15 14 13 17 17 Si 1.86292 * 109.47229 * 335.03068 * 15 14 13 18 18 H 1.48506 * 109.47392 * 59.99694 * 17 15 14 19 19 H 1.48505 * 109.47279 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47173 * 299.99659 * 17 15 14 21 21 N 1.35536 * 108.87313 * 359.76914 * 14 13 12 22 22 C 1.46497 * 125.67907 * 180.26142 * 21 14 13 23 23 C 1.46504 * 119.99782 * 90.00051 * 8 7 6 24 24 C 1.42394 * 131.99960 * 189.67466 * 22 21 14 25 25 C 1.52998 * 109.46945 * 220.69872 * 23 8 7 26 26 C 1.31587 * 83.94537 * 237.94738 * 21 14 13 27 27 C 1.53000 * 117.49773 * 192.78761 * 25 23 8 28 28 C 1.38263 * 120.11396 * 359.44047 * 6 5 4 29 29 C 1.38145 * 120.05433 * 0.55295 * 28 6 5 30 30 H 1.08997 * 109.47076 * 59.99410 * 1 2 3 31 31 H 1.09000 * 109.47518 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47001 * 299.99658 * 1 2 3 33 33 H 1.07996 * 120.02566 * 0.02562 * 4 3 2 34 34 H 1.07994 * 119.97533 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47084 * 209.99857 * 7 6 5 36 36 H 1.09001 * 109.47186 * 329.99630 * 7 6 5 37 37 H 1.07993 * 126.46245 * 359.92518 * 12 11 9 38 38 H 1.08001 * 126.06827 * 179.97438 * 13 12 11 39 39 H 1.09005 * 109.47202 * 95.03151 * 15 14 13 40 40 H 0.96705 * 113.99747 * 59.99752 * 16 15 14 41 41 H 1.09003 * 109.47213 * 269.92504 * 22 21 14 42 42 H 1.08997 * 109.47346 * 29.92220 * 22 21 14 43 43 H 0.92257 * 49.94858 * 291.48294 * 24 22 21 44 44 H 1.08999 * 109.46888 * 340.70092 * 23 8 7 45 45 H 0.72656 * 73.64542 * 279.22683 * 41 22 21 46 46 H 1.09007 * 74.66914 * 192.62541 * 24 22 21 47 47 H 1.08998 * 158.77077 * 88.22100 * 24 22 21 48 48 H 1.09004 * 115.55184 * 47.12098 * 25 23 8 49 49 H 0.94395 * 44.66269 * 5.98136 * 22 21 14 50 50 H 1.09000 * 91.13567 * 33.81870 * 26 21 14 51 51 H 1.08999 * 117.50214 * 214.97693 * 27 25 23 52 52 H 1.09000 * 117.50038 * 0.02562 * 27 25 23 53 53 H 1.07993 * 119.97415 * 180.26082 * 28 6 5 54 54 H 1.08000 * 120.03038 * 179.69812 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0070 7 6 3.9862 5.0184 0.0144 8 7 4.2085 5.4608 -1.3644 9 6 5.3507 5.1344 -2.0010 10 8 6.2003 4.4778 -1.4283 11 6 5.5698 5.5707 -3.3842 12 6 6.3966 4.9670 -4.3077 13 6 6.3027 5.7085 -5.4897 14 6 5.4390 6.7290 -5.2725 15 6 5.0460 7.7750 -6.2837 16 8 4.8490 9.0265 -5.6227 17 14 6.3975 7.9494 -7.5539 18 1 6.6021 6.6488 -8.2409 19 1 6.0099 8.9797 -8.5508 20 1 7.6575 8.3585 -6.8830 21 7 4.9824 6.6534 -3.9986 22 6 4.0255 7.5728 -3.3778 23 6 3.1892 6.2581 -2.0512 24 6 3.5941 7.7321 -2.0302 25 6 3.0628 5.7849 -3.5007 26 6 3.8006 6.5882 -4.5737 27 6 2.2769 6.6728 -4.4676 28 6 1.9212 3.6048 0.0007 29 6 1.2916 2.3751 0.0001 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0209 0.3799 0.0005 34 1 5.1346 2.5749 0.0019 35 1 3.3580 5.7434 0.5319 36 1 4.9439 4.9353 0.5282 37 1 7.0031 4.0878 -4.1483 38 1 6.8259 5.5038 -6.4120 39 1 4.1210 7.4748 -6.7762 40 1 5.6330 9.3555 -5.1618 41 1 4.5645 8.3962 -2.9091 42 1 3.3527 7.9660 -4.1399 43 1 3.4475 7.0402 -2.6226 44 1 2.2316 6.1376 -1.5448 45 1 4.5970 7.8392 -2.4437 46 1 2.8907 8.3114 -2.6284 47 1 3.5839 8.0967 -1.0030 48 1 2.9933 4.7059 -3.6386 49 1 4.3760 7.4540 -4.2462 50 1 4.2175 6.0380 -5.4173 51 1 1.6907 6.1779 -5.2420 52 1 1.8502 7.5941 -4.0712 53 1 1.3344 4.5113 0.0011 54 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10331786_10803936.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:42:26 Heat of formation + Delta-G solvation = 1319.588754 kcal Electronic energy + Delta-G solvation = -38220.443780 eV Core-core repulsion = 33876.417891 eV Total energy + Delta-G solvation = -4344.025889 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 372.201 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -54.95620 -44.24972 -41.31421 -40.60180 -38.65618 -37.78218 -37.02134 -35.67197 -34.32807 -32.55131 -32.14946 -31.57022 -29.05748 -28.46371 -27.48164 -26.03059 -25.00336 -23.96757 -23.59172 -22.91688 -22.39219 -21.62405 -20.88723 -20.44563 -19.36693 -19.22840 -18.48418 -17.78180 -17.35962 -17.23230 -17.07889 -16.75393 -16.55772 -16.39600 -16.24059 -15.75731 -15.61705 -15.34556 -15.22227 -14.92029 -14.71191 -14.67692 -14.56071 -14.39457 -13.95564 -13.80654 -13.62888 -13.28931 -13.09771 -12.91020 -12.70484 -12.57972 -12.41950 -12.13408 -12.03843 -12.00868 -11.81888 -11.74356 -11.63342 -11.24798 -10.93630 -10.68732 -10.23444 -10.08133 -9.88591 -9.23207 -9.10544 -8.39907 -7.32978 -7.11490 -0.22544 0.22599 0.27422 1.07706 1.40722 1.49541 1.53631 1.66961 1.78274 1.90774 1.98352 2.27353 2.43267 2.72072 2.80611 2.93293 3.17990 3.35233 3.39870 3.53368 3.70996 3.76866 3.81115 3.86892 3.88360 3.91737 4.04005 4.09019 4.19115 4.20470 4.27444 4.30426 4.31711 4.31839 4.47121 4.50308 4.56415 4.61144 4.65400 4.69767 4.71298 4.74666 4.79289 4.85134 4.92339 4.96443 5.02374 5.16322 5.24400 5.25741 5.29404 5.32959 5.43378 5.53268 5.56627 5.71687 5.72763 5.80042 6.25328 6.33781 6.59421 7.08627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.116 3.884 4 C -0.179 4.179 5 C -0.072 4.072 6 C -0.150 4.150 7 C 0.155 3.845 8 N -0.586 5.586 9 C 0.587 3.413 10 O -0.582 6.582 11 C -0.160 4.160 12 C -0.112 4.112 13 C -0.245 4.245 14 C 0.044 3.956 15 C -0.068 4.068 16 O -0.533 6.533 17 Si 0.992 3.008 18 H -0.268 1.268 19 H -0.258 1.258 20 H -0.264 1.264 21 N -0.465 5.465 22 C -0.234 4.234 23 C 0.084 3.916 24 C -0.262 4.262 25 C -0.271 4.271 26 C -0.026 4.026 27 C -0.222 4.222 28 C -0.060 4.060 29 C -0.212 4.212 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.393 0.607 41 H 0.136 0.864 42 H 0.084 0.916 43 H 0.362 0.638 44 H 0.130 0.870 45 H 0.236 0.764 46 H 0.128 0.872 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.270 0.730 50 H 0.060 0.940 51 H 0.089 0.911 52 H 0.129 0.871 53 H 0.161 0.839 54 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 9.662 -0.515 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.071 3.929 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.151 4.151 7 C 0.034 3.966 8 N -0.316 5.316 9 C 0.379 3.621 10 O -0.462 6.462 11 C -0.254 4.254 12 C -0.134 4.134 13 C -0.265 4.265 14 C -0.044 4.044 15 C -0.179 4.179 16 O -0.340 6.340 17 Si 0.816 3.184 18 H -0.193 1.193 19 H -0.182 1.182 20 H -0.188 1.188 21 N -0.184 5.184 22 C -0.308 4.308 23 C -0.019 4.019 24 C -0.310 4.310 25 C -0.293 4.293 26 C -0.095 4.095 27 C -0.263 4.263 28 C -0.078 4.078 29 C -0.230 4.230 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.242 0.758 41 H 0.151 0.849 42 H 0.099 0.901 43 H 0.368 0.632 44 H 0.147 0.853 45 H 0.249 0.751 46 H 0.144 0.856 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.273 0.727 50 H 0.076 0.924 51 H 0.107 0.893 52 H 0.146 0.854 53 H 0.178 0.822 54 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.469 9.438 -0.757 12.059 hybrid contribution 0.906 -2.482 0.012 2.642 sum -6.563 6.956 -0.745 9.592 Atomic orbital electron populations 1.23347 0.76239 1.05547 1.02419 1.86056 1.23687 1.27230 1.88588 1.19273 0.92318 0.85173 0.96173 1.20570 0.92299 0.98838 1.08057 1.21021 0.99878 0.91848 0.96362 1.20276 0.94320 0.95530 1.05022 1.20532 1.01556 0.92425 0.82065 1.47900 1.16636 1.53046 1.14001 1.17588 0.81272 0.78057 0.85163 1.90769 1.45733 1.41486 1.68244 1.23477 1.02310 1.05904 0.93700 1.21961 0.97001 1.00418 0.94012 1.21031 1.04940 1.00490 1.00077 1.21207 0.90066 0.99615 0.93478 1.25443 1.12106 0.82586 0.97788 1.86510 1.41683 1.34045 1.71736 0.85043 0.76082 0.80036 0.77274 1.19312 1.18183 1.18779 1.75480 1.16721 1.18332 1.07894 1.33424 0.99085 1.02653 0.95626 1.22558 0.94495 0.92697 0.92180 1.22888 1.19432 0.83531 1.05172 1.23871 1.17159 0.97989 0.90311 1.18669 0.83935 1.10880 0.96016 1.24856 1.01046 0.99556 1.00888 1.21181 0.93240 0.98135 0.95229 1.21534 1.01210 0.91872 1.08431 0.91677 0.86718 0.91235 0.86051 0.86644 0.85116 0.90256 0.87174 0.83283 0.83085 0.75756 0.84931 0.90145 0.63190 0.85266 0.75122 0.85620 0.91060 0.91742 0.72667 0.92417 0.89294 0.85353 0.82174 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.34 -2.78 10.50 -92.36 -0.97 -3.75 16 3 C 0.12 0.99 6.69 22.51 0.15 1.14 16 4 C -0.18 -1.97 9.99 22.37 0.22 -1.75 16 5 C -0.07 -0.74 9.69 22.26 0.22 -0.52 16 6 C -0.15 -0.64 5.46 -19.85 -0.11 -0.75 16 7 C 0.16 0.05 5.48 85.63 0.47 0.52 16 8 N -0.59 -0.73 2.41 ******* -2.79 -3.52 16 9 C 0.59 6.15 7.26 86.45 0.63 6.78 16 10 O -0.58 -11.06 16.08 -4.33 -0.07 -11.13 16 11 C -0.16 -1.31 5.06 40.35 0.20 -1.11 16 12 C -0.11 -1.26 10.74 22.57 0.24 -1.02 16 13 C -0.25 -1.27 9.04 22.01 0.20 -1.07 16 14 C 0.04 -0.03 3.11 12.39 0.04 0.01 16 15 C -0.07 0.45 2.02 71.24 0.14 0.60 16 16 O -0.53 5.44 10.76 -148.98 -1.60 3.84 16 17 Si 0.99 -3.85 26.36 68.60 1.81 -2.04 16 18 H -0.27 0.17 6.84 99.48 0.68 0.85 16 19 H -0.26 0.56 7.11 99.48 0.71 1.27 16 20 H -0.26 0.36 7.11 99.48 0.71 1.06 16 21 N -0.46 0.50 1.55 ******* -10.20 -9.70 16 22 C -0.23 2.29 1.63 36.39 0.06 2.35 16 23 C 0.08 -0.54 3.06 42.20 0.13 -0.41 16 24 C -0.26 3.58 6.76 27.43 0.19 3.76 16 25 C -0.27 0.40 4.20 -14.76 -0.06 0.34 16 26 C -0.03 0.09 1.94 -21.61 -0.04 0.05 16 27 C -0.22 1.44 9.18 30.59 0.28 1.72 16 28 C -0.06 -0.02 9.69 22.25 0.22 0.20 16 29 C -0.21 -0.59 9.04 22.37 0.20 -0.39 16 30 H 0.06 -0.21 7.66 -2.39 -0.02 -0.23 16 31 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.07 -0.27 7.66 -2.39 -0.02 -0.29 16 33 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.12 1.53 7.58 -2.91 -0.02 1.51 16 35 H 0.13 -1.09 8.02 -2.39 -0.02 -1.11 16 36 H 0.08 0.36 7.36 -2.39 -0.02 0.34 16 37 H 0.11 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.15 0.44 6.48 -2.91 -0.02 0.42 16 39 H 0.15 -1.39 7.24 -2.38 -0.02 -1.40 16 40 H 0.39 -6.13 8.70 -74.05 -0.64 -6.78 16 41 H 0.14 -2.12 5.25 -71.31 -0.37 -2.50 16 42 H 0.08 -1.01 2.79 -81.22 -0.23 -1.24 16 43 H 0.36 -3.60 0.00 0.00 0.00 -3.60 16 44 H 0.13 -1.41 7.99 -2.39 -0.02 -1.42 16 45 H 0.24 -2.77 2.84 -102.22 -0.29 -3.06 16 46 H 0.13 -2.42 5.20 -58.44 -0.30 -2.73 16 47 H 0.07 -1.18 8.14 -2.39 -0.02 -1.19 16 48 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 49 H 0.27 -1.98 0.02 -332.82 -0.01 -1.99 16 50 H 0.06 0.06 4.05 -103.14 -0.42 -0.35 16 51 H 0.09 -0.39 8.14 -2.39 -0.02 -0.40 16 52 H 0.13 -1.65 6.23 -2.39 -0.01 -1.67 16 53 H 0.16 -1.22 8.06 -2.91 -0.02 -1.24 16 54 H 0.15 -0.39 6.30 -2.91 -0.02 -0.41 16 Total: 0.00 -28.28 376.69 -9.83 -38.11 By element: Atomic # 1 Polarization: -22.84 SS G_CDS: -0.50 Total: -23.34 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.49 Total: 11.52 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -12.99 Total: -13.21 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -2.64 Total: -11.04 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 1.81 Total: -2.04 kcal Total: -28.28 -9.83 -38.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10331786_10803936.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1357.699 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1329.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 1319.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds