Wall clock time and date at job start Sat Mar 6 2021 11:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86309 * 109.46848 * 2 1 4 4 C 1.50702 * 109.47416 * 119.99590 * 2 1 3 5 5 C 1.34708 * 125.65939 * 64.97928 * 4 2 1 6 6 C 1.40972 * 107.02335 * 179.78539 * 5 4 2 7 7 C 1.35936 * 106.74391 * 0.34979 * 6 5 4 8 8 C 1.47813 * 125.92912 * 179.91255 * 7 6 5 9 9 C 1.39177 * 120.00195 * 179.97438 * 8 7 6 10 10 C 1.39464 * 119.76053 * 180.22978 * 9 8 7 11 11 C 1.47558 * 120.11959 * 179.74857 * 10 9 8 12 12 O 1.21595 * 119.99591 * 179.72729 * 11 10 9 13 13 N 1.34772 * 120.00462 * 359.72815 * 11 10 9 14 14 C 1.46506 * 120.00033 * 180.02562 * 13 11 10 15 15 H 1.08992 * 112.90684 * 336.24748 * 14 13 11 16 16 C 1.54049 * 113.61276 * 107.61836 * 14 13 11 17 17 C 1.53781 * 87.08031 * 89.07129 * 16 14 13 18 18 H 1.08999 * 113.61181 * 270.87794 * 17 16 14 19 19 C 1.50696 * 113.69134 * 139.98880 * 17 16 14 20 20 C 1.38241 * 119.99122 * 322.18863 * 19 17 16 21 21 C 1.38220 * 120.01234 * 179.72968 * 20 19 17 22 22 C 1.38328 * 119.98490 * 0.54507 * 21 20 19 23 23 Br 1.89105 * 120.00611 * 179.70443 * 22 21 20 24 24 C 1.38315 * 119.98127 * 359.72868 * 22 21 20 25 25 C 1.38217 * 119.99637 * 0.02562 * 24 22 21 26 26 C 1.53781 * 87.08070 * 25.42738 * 17 16 14 27 27 C 1.40209 * 119.75387 * 359.47682 * 10 9 8 28 28 O 1.35650 * 120.00224 * 180.25503 * 27 10 9 29 29 C 1.38817 * 119.99666 * 0.26933 * 27 10 9 30 30 C 1.37775 * 120.24560 * 0.02562 * 29 27 10 31 31 O 1.34336 * 125.66533 * 244.98245 * 4 2 1 32 32 H 0.96698 * 114.00628 * 299.99335 * 1 2 3 33 33 H 1.09000 * 109.47501 * 240.00249 * 2 1 3 34 34 H 1.48500 * 109.99956 * 178.68158 * 3 2 1 35 35 H 1.48498 * 109.99573 * 300.00054 * 3 2 1 36 36 H 1.07992 * 126.49012 * 0.02562 * 5 4 2 37 37 H 1.08007 * 126.62614 * 180.25228 * 6 5 4 38 38 H 1.08007 * 120.11884 * 0.02562 * 9 8 7 39 39 H 0.97002 * 120.00078 * 359.97438 * 13 11 10 40 40 H 1.09005 * 113.62125 * 334.52173 * 16 14 13 41 41 H 1.08996 * 113.68970 * 203.62749 * 16 14 13 42 42 H 1.08003 * 119.99094 * 359.97438 * 20 19 17 43 43 H 1.08001 * 120.00652 * 180.25329 * 21 20 19 44 44 H 1.08005 * 120.00537 * 179.97438 * 24 22 21 45 45 H 1.07998 * 120.00299 * 179.97438 * 25 24 22 46 46 H 1.09002 * 113.61445 * 89.11830 * 26 17 16 47 47 H 1.09002 * 113.61408 * 219.93560 * 26 17 16 48 48 H 0.96702 * 114.00200 * 89.99698 * 28 27 10 49 49 H 1.08005 * 119.88004 * 179.97438 * 29 27 10 50 50 H 1.07994 * 119.87542 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.7568 -2.0166 1.5095 6 6 2.3860 -2.2620 2.7469 7 6 2.9085 -1.0777 3.1623 8 6 3.6598 -0.8530 4.4152 9 6 4.1421 0.4166 4.7194 10 6 4.8544 0.6219 5.9006 11 6 5.3741 1.9635 6.2282 12 8 5.9907 2.1410 7.2611 13 7 5.1655 2.9920 5.3827 14 6 5.6820 4.3239 5.7078 15 1 5.8375 4.4694 6.7767 16 6 6.8853 4.7469 4.8439 17 6 5.8664 5.3255 3.8479 18 1 5.5326 4.6079 3.0984 19 6 6.2857 6.6437 3.2500 20 6 6.9433 7.5777 4.0286 21 6 7.3330 8.7847 3.4792 22 6 7.0548 9.0625 2.1529 23 35 7.5803 10.7170 1.4029 24 6 6.3918 8.1300 1.3758 25 6 6.0070 6.9212 1.9246 26 6 4.9023 5.4675 5.0375 27 6 5.0700 -0.4500 6.7784 28 8 5.7578 -0.2548 7.9312 29 6 4.5799 -1.7110 6.4676 30 6 3.8814 -1.9150 5.2977 31 8 2.6276 -0.1460 2.2312 32 1 -0.3934 0.4416 0.7650 33 1 1.7924 -0.5138 -0.8900 34 1 3.5345 1.7705 0.0321 35 1 1.5613 2.4679 -1.2085 36 1 1.2368 -2.7398 0.8989 37 1 2.4409 -3.2078 3.2655 38 1 3.9681 1.2392 4.0414 39 1 4.6740 2.8504 4.5586 40 1 7.4550 3.9065 4.4471 41 1 7.5161 5.5027 5.3117 42 1 7.1561 7.3627 5.0654 43 1 7.8503 9.5127 4.0865 44 1 6.1741 8.3466 0.3403 45 1 5.4890 6.1932 1.3180 46 1 4.9901 6.4204 5.5593 47 1 3.8708 5.2102 4.7966 48 1 5.2026 -0.0077 8.6835 49 1 4.7474 -2.5354 7.1449 50 1 3.5031 -2.8986 5.0616 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10390340_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:13:00 Heat of formation + Delta-G solvation = 3.176898 kcal Electronic energy + Delta-G solvation = -37200.182803 eV Core-core repulsion = 32173.362763 eV Total energy + Delta-G solvation = -5026.820040 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 470.061 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.68585 -41.84075 -41.02714 -39.81690 -38.65716 -38.07498 -37.75482 -34.86216 -34.16433 -33.23454 -32.70389 -32.15776 -31.99799 -30.29573 -29.99876 -26.69445 -26.37945 -26.27281 -25.08303 -23.92485 -23.54226 -22.97715 -22.39237 -21.85859 -21.20859 -20.24469 -19.53245 -19.14345 -18.39691 -17.97129 -17.59836 -17.42992 -17.06832 -16.71546 -16.61773 -16.32632 -16.22713 -16.09251 -15.88193 -15.70253 -15.44000 -15.13497 -14.94564 -14.56881 -14.47597 -14.43366 -14.30798 -14.20190 -13.95298 -13.86870 -13.61498 -13.44598 -13.41260 -13.17211 -13.10328 -12.90465 -12.75501 -12.41009 -12.19495 -12.05722 -11.91160 -11.82471 -11.41645 -11.29093 -11.21609 -11.04950 -10.91907 -10.64039 -10.45288 -10.30522 -10.06210 -10.00048 -9.51368 -8.89354 -5.01813 -0.54893 -0.19538 0.05086 0.31768 0.65001 0.78479 1.17924 1.44759 1.51302 1.77810 1.87203 1.93263 1.99939 2.55896 2.64063 3.12617 3.25419 3.40793 3.44115 3.52044 3.64285 3.66525 3.71459 3.82990 3.91626 3.94691 3.96190 4.02472 4.07515 4.18917 4.22566 4.32848 4.35535 4.41008 4.41408 4.62246 4.65846 4.68983 4.70922 4.78315 4.79755 4.85827 4.88949 4.90086 5.02265 5.02909 5.04671 5.12834 5.16737 5.22216 5.23246 5.24075 5.44709 5.49414 5.52111 5.64437 5.83389 5.99973 6.43074 6.63885 6.74450 7.13500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.032 4.032 3 Si 0.780 3.220 4 C -0.055 4.055 5 C -0.185 4.185 6 C -0.192 4.192 7 C 0.025 3.975 8 C -0.041 4.041 9 C -0.049 4.049 10 C -0.179 4.179 11 C 0.560 3.440 12 O -0.558 6.558 13 N -0.698 5.698 14 C 0.116 3.884 15 H 0.090 0.910 16 C -0.145 4.145 17 C -0.070 4.070 18 H 0.114 0.886 19 C -0.055 4.055 20 C -0.114 4.114 21 C -0.099 4.099 22 C -0.110 4.110 23 Br -0.064 7.064 24 C -0.099 4.099 25 C -0.113 4.113 26 C -0.122 4.122 27 C 0.164 3.836 28 O -0.495 6.495 29 C -0.148 4.148 30 C -0.045 4.045 31 O -0.169 6.169 32 H 0.399 0.601 33 H 0.133 0.867 34 H -0.284 1.284 35 H -0.283 1.283 36 H 0.159 0.841 37 H 0.173 0.827 38 H 0.153 0.847 39 H 0.412 0.588 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.150 0.850 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.411 0.589 49 H 0.162 0.838 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -2.511 0.347 6.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.142 4.142 3 Si 0.684 3.316 4 C -0.105 4.105 5 C -0.204 4.204 6 C -0.210 4.210 7 C -0.025 4.025 8 C -0.042 4.042 9 C -0.068 4.068 10 C -0.183 4.183 11 C 0.348 3.652 12 O -0.437 6.437 13 N -0.351 5.351 14 C 0.011 3.989 15 H 0.109 0.891 16 C -0.184 4.184 17 C -0.088 4.088 18 H 0.132 0.868 19 C -0.056 4.056 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.189 4.189 23 Br 0.022 6.978 24 C -0.119 4.119 25 C -0.132 4.132 26 C -0.160 4.160 27 C 0.118 3.882 28 O -0.309 6.309 29 C -0.166 4.166 30 C -0.064 4.064 31 O -0.066 6.066 32 H 0.250 0.750 33 H 0.150 0.850 34 H -0.211 1.211 35 H -0.210 1.210 36 H 0.177 0.823 37 H 0.190 0.810 38 H 0.170 0.830 39 H 0.250 0.750 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.168 0.832 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.272 0.728 49 H 0.180 0.820 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.968 -1.279 -0.476 4.196 hybrid contribution -0.316 -0.964 -0.214 1.036 sum -4.284 -2.243 -0.690 4.885 Atomic orbital electron populations 1.86536 1.16109 1.82178 1.50305 1.24549 0.85344 1.11758 0.92562 0.93441 0.78152 0.74901 0.85150 1.23101 1.00847 0.94102 0.92404 1.21789 1.04092 0.96044 0.98461 1.22148 1.02262 0.99121 0.97511 1.20413 1.03436 0.87669 0.90933 1.17681 1.00453 0.94531 0.91502 1.21425 0.93514 0.97299 0.94532 1.20245 1.05636 0.93710 0.98716 1.18228 0.79064 0.84573 0.83288 1.90816 1.41639 1.84614 1.26606 1.45504 1.57216 1.08066 1.24289 1.21915 0.95415 0.81685 0.99935 0.89149 1.23629 0.96698 1.01043 0.96985 1.21662 0.97248 0.93390 0.96477 0.86804 1.20000 0.96220 0.95715 0.93617 1.21250 0.98316 0.92601 1.01097 1.21299 0.99165 0.98179 0.93179 1.21977 1.06263 0.93783 0.96922 1.96754 1.90800 1.26059 1.84221 1.21318 0.96946 0.93307 1.00328 1.21348 0.99986 0.96649 0.95226 1.23380 0.99320 0.98255 0.94994 1.18892 0.89720 0.91769 0.87852 1.84708 1.36437 1.91085 1.18689 1.21569 0.98924 0.96994 0.99129 1.21413 0.94511 0.99225 0.91206 1.83885 1.58030 1.38121 1.26604 0.75011 0.85017 1.21091 1.20977 0.82343 0.80982 0.82966 0.74988 0.91771 0.88233 0.83543 0.84458 0.84405 0.83202 0.87749 0.88786 0.72824 0.82007 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.84 12.88 -148.98 -1.92 -0.08 16 2 C -0.03 0.12 2.98 71.24 0.21 0.33 16 3 Si 0.78 -3.87 32.11 68.60 2.20 -1.67 16 4 C -0.05 0.08 6.20 24.88 0.15 0.23 16 5 C -0.18 0.17 10.78 22.13 0.24 0.41 16 6 C -0.19 0.42 10.26 22.41 0.23 0.65 16 7 C 0.03 -0.03 7.03 24.27 0.17 0.14 16 8 C -0.04 0.10 5.87 -20.13 -0.12 -0.02 16 9 C -0.05 0.13 9.20 22.79 0.21 0.34 16 10 C -0.18 -0.25 5.88 -20.04 -0.12 -0.37 16 11 C 0.56 2.38 7.76 86.70 0.67 3.06 16 12 O -0.56 -6.76 14.74 16.98 0.25 -6.51 16 13 N -0.70 1.74 5.21 -442.73 -2.31 -0.57 16 14 C 0.12 -0.33 4.34 45.61 0.20 -0.13 16 15 H 0.09 0.12 7.46 -2.39 -0.02 0.10 16 16 C -0.15 0.49 7.27 31.21 0.23 0.72 16 17 C -0.07 0.45 3.85 -11.01 -0.04 0.41 16 18 H 0.11 -1.03 8.09 -2.39 -0.02 -1.05 16 19 C -0.06 0.18 5.29 -19.86 -0.11 0.08 16 20 C -0.11 0.25 8.60 22.27 0.19 0.44 16 21 C -0.10 -0.05 9.79 22.29 0.22 0.17 16 22 C -0.11 -0.26 6.22 22.31 0.14 -0.12 16 23 Br -0.06 -0.23 33.70 -20.37 -0.69 -0.91 16 24 C -0.10 -0.02 9.79 22.28 0.22 0.19 16 25 C -0.11 0.30 9.71 22.27 0.22 0.52 16 26 C -0.12 0.91 7.28 31.12 0.23 1.13 16 27 C 0.16 0.29 6.72 22.89 0.15 0.45 16 28 O -0.50 -2.09 11.55 -68.66 -0.79 -2.89 16 29 C -0.15 0.46 9.96 22.30 0.22 0.68 16 30 C -0.05 0.22 9.54 22.55 0.22 0.43 16 31 O -0.17 0.21 8.80 -6.51 -0.06 0.16 16 32 H 0.40 -4.48 8.70 -74.06 -0.64 -5.12 16 33 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 34 H -0.28 -0.16 7.11 99.48 0.71 0.55 16 35 H -0.28 -0.33 7.11 99.48 0.71 0.38 16 36 H 0.16 -0.41 8.06 -2.91 -0.02 -0.43 16 37 H 0.17 -1.19 7.25 -2.91 -0.02 -1.21 16 38 H 0.15 -1.11 6.24 -2.91 -0.02 -1.12 16 39 H 0.41 -3.29 6.73 -92.71 -0.62 -3.92 16 40 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 41 H 0.10 -0.39 6.33 -2.39 -0.02 -0.41 16 42 H 0.15 -0.82 6.68 -2.91 -0.02 -0.84 16 43 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 44 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 45 H 0.15 -1.07 8.05 -2.91 -0.02 -1.09 16 46 H 0.10 -0.80 7.71 -2.39 -0.02 -0.82 16 47 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 48 H 0.41 -1.26 9.06 -74.06 -0.67 -1.93 16 49 H 0.16 -1.12 8.06 -2.91 -0.02 -1.14 16 50 H 0.16 -1.61 6.96 -2.91 -0.02 -1.63 16 Total: 0.00 -23.93 443.28 -0.43 -24.36 By element: Atomic # 1 Polarization: -20.79 SS G_CDS: -0.85 Total: -21.64 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 3.73 Total: 9.74 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -2.31 Total: -0.57 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -2.52 Total: -9.31 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.20 Total: -1.67 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.91 kcal Total: -23.93 -0.43 -24.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10390340_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.535 kcal (2) G-P(sol) polarization free energy of solvation -23.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds