Wall clock time and date at job start Sat Mar 6 2021 11:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38053 * 119.80778 * 299.72925 * 4 2 1 6 6 C 1.38708 * 120.08601 * 179.76567 * 5 4 2 7 7 O 1.35654 * 120.15217 * 180.27033 * 6 5 4 8 8 C 1.40141 * 119.69993 * 0.51069 * 6 5 4 9 9 C 1.47532 * 120.19193 * 179.77465 * 8 6 5 10 10 O 1.21585 * 120.00194 * 359.96463 * 9 8 6 11 11 N 1.34781 * 120.00113 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00050 * 179.97438 * 11 9 8 13 13 H 1.09006 * 112.85041 * 23.80846 * 12 11 9 14 14 C 1.53785 * 113.61005 * 154.99687 * 12 11 9 15 15 C 1.53790 * 87.07723 * 89.12065 * 14 12 11 16 16 H 1.09000 * 113.61193 * 270.79775 * 15 14 12 17 17 C 1.50705 * 113.61042 * 139.98008 * 15 14 12 18 18 C 1.38239 * 119.99125 * 299.72315 * 17 15 14 19 19 C 1.38217 * 120.00737 * 179.73191 * 18 17 15 20 20 C 1.38322 * 119.98852 * 0.54555 * 19 18 17 21 21 Br 1.89105 * 120.00654 * 179.70504 * 20 19 18 22 22 C 1.38321 * 119.98095 * 359.72866 * 20 19 18 23 23 C 1.38214 * 119.99342 * 0.02562 * 22 20 19 24 24 C 1.53776 * 113.61696 * 252.49831 * 12 11 9 25 25 C 1.39705 * 119.61431 * 359.73892 * 8 6 5 26 26 C 1.37788 * 119.91094 * 0.02562 * 25 8 6 27 27 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 29 29 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 30 30 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 31 31 H 1.08003 * 119.95920 * 0.02562 * 5 4 2 32 32 H 0.96698 * 114.00339 * 270.23336 * 7 6 5 33 33 H 0.97002 * 119.99616 * 359.97438 * 11 9 8 34 34 H 1.08998 * 113.61263 * 203.66297 * 14 12 11 35 35 H 1.08998 * 113.61873 * 334.48660 * 14 12 11 36 36 H 1.07998 * 119.99206 * 359.97438 * 18 17 15 37 37 H 1.08004 * 120.00301 * 180.24828 * 19 18 17 38 38 H 1.08007 * 120.00148 * 179.97438 * 22 20 19 39 39 H 1.07995 * 119.99601 * 179.97438 * 23 22 20 40 40 H 1.08998 * 113.61371 * 25.43165 * 24 12 11 41 41 H 1.08998 * 113.61550 * 156.34110 * 24 12 11 42 42 H 1.08002 * 120.04512 * 180.02562 * 25 8 6 43 43 H 1.08001 * 119.84807 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6000 -2.0338 -1.4420 6 6 2.0552 -2.6920 -2.5750 7 8 1.7259 -3.9907 -2.7871 8 6 2.8610 -2.0106 -3.4972 9 6 3.3553 -2.7015 -4.7034 10 8 3.0643 -3.8656 -4.8994 11 7 4.1296 -2.0423 -5.5879 12 6 4.6208 -2.7286 -6.7854 13 1 3.9999 -3.5776 -7.0714 14 6 4.9409 -1.7789 -7.9518 15 6 6.3596 -1.6677 -7.3687 16 1 6.4699 -0.8663 -6.6382 17 6 7.4436 -1.6586 -8.4156 18 6 7.5892 -2.7364 -9.2690 19 6 8.5797 -2.7261 -10.2329 20 6 9.4325 -1.6419 -10.3363 21 35 10.7931 -1.6308 -11.6495 22 6 9.2900 -0.5662 -9.4785 23 6 8.2960 -0.5752 -8.5182 24 6 6.1238 -3.0504 -6.7380 25 6 3.1929 -0.6730 -3.2679 26 6 2.7279 -0.0334 -2.1396 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5139 0.8900 29 1 1.5879 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 0.9821 -2.5562 -0.7267 32 1 2.3517 -4.6223 -2.4069 33 1 4.3616 -1.1135 -5.4317 34 1 4.9071 -2.2607 -8.9290 35 1 4.3802 -0.8447 -7.9209 36 1 6.9264 -3.5850 -9.1849 37 1 8.6908 -3.5664 -10.9022 38 1 9.9560 0.2803 -9.5586 39 1 8.1850 0.2645 -7.8482 40 1 6.5191 -3.1420 -5.7264 41 1 6.4133 -3.8797 -7.3834 42 1 3.8131 -0.1411 -3.9742 43 1 2.9855 1.0005 -1.9632 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10390340_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:13:45 Heat of formation + Delta-G solvation = -18.529289 kcal Electronic energy + Delta-G solvation = -28121.977330 eV Core-core repulsion = 23953.114271 eV Total energy + Delta-G solvation = -4168.863059 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.046 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87531 -41.11114 -39.96409 -38.86148 -38.32318 -37.23006 -34.79983 -33.28069 -32.38195 -32.00658 -31.09817 -30.29807 -27.62825 -26.68608 -25.81935 -24.01435 -23.88133 -23.50540 -22.37429 -21.73888 -20.21091 -19.39164 -18.81903 -18.28703 -17.91647 -17.29808 -16.72736 -16.53344 -16.38362 -16.19973 -16.07315 -16.00518 -15.82351 -15.33613 -15.07088 -14.90455 -14.68977 -14.49604 -14.40439 -14.16886 -13.73894 -13.54306 -13.42385 -13.23239 -12.91921 -12.83638 -12.39998 -12.36434 -12.15825 -12.03435 -11.83564 -11.61415 -11.39854 -11.27295 -11.19550 -10.97300 -10.65840 -10.22063 -10.00790 -9.97202 -9.76868 -9.49207 -4.89754 -0.40775 0.07336 0.16273 0.34253 0.67192 1.29004 1.63499 1.71006 2.00675 2.02099 2.56532 2.59066 3.13605 3.37987 3.45757 3.50036 3.66315 3.69052 3.73137 3.79265 3.85253 3.97019 3.98407 4.09706 4.22105 4.28856 4.37932 4.43297 4.45619 4.61970 4.66661 4.73023 4.77130 4.79524 4.85814 4.92109 5.03860 5.04064 5.07280 5.12928 5.18682 5.25445 5.25706 5.26522 5.51344 5.61227 5.66910 5.86120 6.44981 6.48276 6.72217 7.17917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.095 4.095 3 Si 0.782 3.218 4 C -0.070 4.070 5 C -0.141 4.141 6 C 0.152 3.848 7 O -0.500 6.500 8 C -0.180 4.180 9 C 0.558 3.442 10 O -0.564 6.564 11 N -0.694 5.694 12 C 0.114 3.886 13 H 0.082 0.918 14 C -0.126 4.126 15 C -0.064 4.064 16 H 0.122 0.878 17 C -0.056 4.056 18 C -0.116 4.116 19 C -0.101 4.101 20 C -0.110 4.110 21 Br -0.065 7.065 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.142 4.142 25 C -0.052 4.052 26 C -0.131 4.131 27 H 0.388 0.612 28 H 0.128 0.872 29 H -0.273 1.273 30 H -0.308 1.308 31 H 0.133 0.867 32 H 0.407 0.593 33 H 0.415 0.585 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.171 0.829 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 5.973 1.860 7.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.203 4.203 3 Si 0.687 3.313 4 C -0.071 4.071 5 C -0.160 4.160 6 C 0.106 3.894 7 O -0.313 6.313 8 C -0.183 4.183 9 C 0.347 3.653 10 O -0.443 6.443 11 N -0.347 5.347 12 C 0.009 3.991 13 H 0.100 0.900 14 C -0.163 4.163 15 C -0.083 4.083 16 H 0.140 0.860 17 C -0.057 4.057 18 C -0.134 4.134 19 C -0.120 4.120 20 C -0.190 4.190 21 Br 0.020 6.980 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.180 4.180 25 C -0.070 4.070 26 C -0.148 4.148 27 H 0.237 0.763 28 H 0.146 0.854 29 H -0.199 1.199 30 H -0.237 1.237 31 H 0.150 0.850 32 H 0.267 0.733 33 H 0.254 0.746 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.188 0.812 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.551 5.872 1.447 7.013 hybrid contribution -1.013 -0.559 -0.017 1.157 sum 2.539 5.313 1.430 6.059 Atomic orbital electron populations 1.86598 1.18478 1.80488 1.50223 1.25504 0.83573 1.12768 0.98434 0.94035 0.89802 0.70810 0.76684 1.20504 0.96388 0.93486 0.96739 1.21337 1.02003 0.95623 0.97014 1.18768 0.92889 0.85667 0.92113 1.84721 1.52647 1.13486 1.80416 1.20438 1.03724 0.96879 0.97307 1.18312 0.77889 0.85953 0.83195 1.90815 1.58636 1.18138 1.76754 1.45432 1.51114 1.16002 1.22170 1.21851 0.95248 0.96605 0.85423 0.89962 1.23388 0.94883 1.00439 0.97640 1.21663 0.91878 0.98997 0.95721 0.86028 1.20024 0.96025 0.93600 0.96011 1.21247 0.98072 0.99350 0.94772 1.21285 0.94579 0.97221 0.98944 1.21982 0.98385 0.99551 0.99055 1.96755 1.49368 1.99044 1.52788 1.21342 0.98901 0.97221 0.94443 1.21371 0.94133 0.99156 0.98240 1.23554 0.95051 0.97444 1.01960 1.21505 0.96864 0.91324 0.97293 1.21247 0.98428 1.01240 0.93901 0.76308 0.85389 1.19915 1.23712 0.84954 0.73278 0.74577 0.88270 0.89084 0.83802 0.84679 0.84295 0.82749 0.91004 0.88580 0.81178 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.34 12.77 -148.98 -1.90 -2.25 16 2 C -0.10 0.37 2.81 71.24 0.20 0.57 16 3 Si 0.78 -5.13 29.77 68.60 2.04 -3.08 16 4 C -0.07 0.24 5.39 -19.83 -0.11 0.13 16 5 C -0.14 -0.15 9.53 22.34 0.21 0.06 16 6 C 0.15 0.59 6.72 22.84 0.15 0.74 16 7 O -0.50 -3.61 11.58 -68.78 -0.80 -4.41 16 8 C -0.18 -0.10 5.89 -20.01 -0.12 -0.22 16 9 C 0.56 2.04 7.76 86.69 0.67 2.71 16 10 O -0.56 -7.24 14.76 16.94 0.25 -6.99 16 11 N -0.69 2.94 5.21 -443.20 -2.31 0.63 16 12 C 0.11 -0.40 4.32 45.52 0.20 -0.21 16 13 H 0.08 0.17 7.46 -2.38 -0.02 0.16 16 14 C -0.13 0.98 7.29 31.12 0.23 1.21 16 15 C -0.06 0.54 3.86 -11.01 -0.04 0.50 16 16 H 0.12 -1.50 8.09 -2.39 -0.02 -1.52 16 17 C -0.06 0.26 5.29 -19.86 -0.11 0.16 16 18 C -0.12 0.33 8.62 22.27 0.19 0.52 16 19 C -0.10 0.00 9.79 22.28 0.22 0.22 16 20 C -0.11 -0.17 6.22 22.31 0.14 -0.03 16 21 Br -0.06 -0.19 33.70 -20.37 -0.69 -0.88 16 22 C -0.10 0.11 9.79 22.28 0.22 0.32 16 23 C -0.11 0.49 9.71 22.27 0.22 0.71 16 24 C -0.14 0.75 7.25 31.12 0.23 0.98 16 25 C -0.05 0.37 9.53 22.52 0.21 0.58 16 26 C -0.13 0.98 8.64 22.24 0.19 1.17 16 27 H 0.39 -1.94 8.70 -74.06 -0.64 -2.59 16 28 H 0.13 -0.68 7.96 -2.38 -0.02 -0.69 16 29 H -0.27 1.06 7.11 99.48 0.71 1.77 16 30 H -0.31 -0.79 7.11 99.48 0.71 -0.08 16 31 H 0.13 0.25 8.06 -2.91 -0.02 0.22 16 32 H 0.41 0.05 9.06 -74.06 -0.67 -0.63 16 33 H 0.42 -4.74 6.73 -92.71 -0.62 -5.36 16 34 H 0.10 -0.71 7.73 -2.39 -0.02 -0.72 16 35 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H 0.14 -0.84 6.64 -2.91 -0.02 -0.86 16 37 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 38 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 39 H 0.15 -1.49 8.05 -2.91 -0.02 -1.51 16 40 H 0.07 -0.28 8.14 -2.39 -0.02 -0.29 16 41 H 0.10 -0.49 6.29 -2.39 -0.02 -0.50 16 42 H 0.17 -2.60 6.40 -2.91 -0.02 -2.61 16 43 H 0.16 -2.14 4.85 -2.91 -0.01 -2.15 16 Total: 0.00 -24.50 378.87 -1.30 -25.80 By element: Atomic # 1 Polarization: -18.15 SS G_CDS: -0.80 Total: -18.95 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 2.91 Total: 10.13 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -2.31 Total: 0.63 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -2.45 Total: -13.65 kcal Atomic # 14 Polarization: -5.13 SS G_CDS: 2.04 Total: -3.08 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.69 Total: -0.88 kcal Total: -24.50 -1.30 -25.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10390340_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.266 kcal (2) G-P(sol) polarization free energy of solvation -24.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds