Wall clock time and date at job start Sat Mar 6 2021 11:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.32763 * 124.71458 * 64.72109 * 4 2 1 6 6 C 1.44429 * 113.08410 * 179.81670 * 5 4 2 7 7 C 1.47193 * 123.46368 * 180.21852 * 6 5 4 8 8 O 1.21638 * 119.99612 * 0.29616 * 7 6 5 9 9 N 1.34768 * 120.00004 * 180.29723 * 7 6 5 10 10 C 1.46498 * 119.99946 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85086 * 336.19429 * 10 9 7 12 12 C 1.53789 * 113.61705 * 107.50094 * 10 9 7 13 13 C 1.53787 * 87.07944 * 89.11591 * 12 10 9 14 14 H 1.08995 * 113.61658 * 270.88771 * 13 12 10 15 15 C 1.50696 * 113.68752 * 139.99599 * 13 12 10 16 16 C 1.38244 * 119.98980 * 322.18385 * 15 13 12 17 17 C 1.38220 * 120.01078 * 179.77201 * 16 15 13 18 18 C 1.38332 * 119.98683 * 0.50939 * 17 16 15 19 19 Br 1.89100 * 120.01026 * 179.77038 * 18 17 16 20 20 C 1.38328 * 119.97925 * 359.74537 * 18 17 16 21 21 C 1.38217 * 119.98952 * 0.02562 * 20 18 17 22 22 C 1.53783 * 113.61503 * 204.99884 * 10 9 7 23 23 C 1.36010 * 113.07685 * 0.46308 * 6 5 4 24 24 S 1.70452 * 110.81852 * 359.75305 * 23 6 5 25 25 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 26 26 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 27 27 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 28 28 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 29 29 H 1.08004 * 123.45929 * 359.96690 * 5 4 2 30 30 H 0.97000 * 120.00526 * 0.02562 * 9 7 6 31 31 H 1.08993 * 113.61712 * 203.66653 * 12 10 9 32 32 H 1.08998 * 113.61074 * 334.57333 * 12 10 9 33 33 H 1.08004 * 119.99453 * 0.02648 * 16 15 13 34 34 H 1.08000 * 120.00721 * 180.23717 * 17 16 15 35 35 H 1.07997 * 120.00359 * 180.02562 * 20 18 17 36 36 H 1.07998 * 119.99171 * 180.02562 * 21 20 18 37 37 H 1.08994 * 113.61628 * 25.43278 * 22 10 9 38 38 H 1.08999 * 113.61401 * 156.25323 * 22 10 9 39 39 H 1.07998 * 124.58935 * 179.77379 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 1.7440 -1.9992 1.4886 6 6 2.3364 -2.4185 2.7373 7 6 2.2702 -3.7989 3.2440 8 8 1.6983 -4.6568 2.5987 9 7 2.8433 -4.1121 4.4229 10 6 2.7770 -5.4859 4.9275 11 1 1.9361 -6.0466 4.5193 12 6 4.1168 -6.2366 4.8483 13 6 4.4214 -5.6801 6.2493 14 1 4.9203 -4.7111 6.2353 15 6 5.0957 -6.6723 7.1614 16 6 4.7296 -8.0049 7.1242 17 6 5.3510 -8.9161 7.9572 18 6 6.3321 -8.4926 8.8357 19 35 7.1781 -9.7375 9.9803 20 6 6.6943 -7.1582 8.8763 21 6 6.0756 -6.2486 8.0395 22 6 2.9005 -5.5870 6.4570 23 6 2.9571 -1.4055 3.3995 24 16 2.8389 0.0524 2.5244 25 1 -0.3934 0.4418 -0.7650 26 1 1.7923 -0.5137 -0.8901 27 1 1.5616 2.4678 1.2086 28 1 3.5346 1.7703 -0.0322 29 1 1.2060 -2.6663 0.8312 30 1 3.2990 -3.4279 4.9377 31 1 4.0090 -7.3209 4.8232 32 1 4.7841 -5.8585 4.0738 33 1 3.9607 -8.3347 6.4411 34 1 5.0676 -9.9577 7.9254 35 1 7.4605 -6.8272 9.5617 36 1 6.3587 -5.2068 8.0709 37 1 2.5859 -4.6846 6.9811 38 1 2.4589 -6.4931 6.8717 39 1 3.4574 -1.5108 4.3508 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10390340_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 11:16:45 Heat of formation + Delta-G solvation = 27.627224 kcal Electronic energy + Delta-G solvation = -24220.001853 eV Core-core repulsion = 20460.974729 eV Total energy + Delta-G solvation = -3759.027124 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.003 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74587 -40.63496 -39.17943 -38.49423 -37.18754 -34.87431 -33.15677 -32.07753 -31.84344 -30.32031 -27.01979 -26.75076 -26.58797 -25.17702 -23.87715 -22.49120 -22.10032 -20.61280 -20.26526 -18.69237 -18.47904 -18.33247 -17.86260 -16.96624 -16.49991 -16.34961 -16.18633 -16.09079 -15.70875 -15.22761 -15.14142 -14.69718 -14.52018 -14.36071 -14.25503 -13.96605 -13.93841 -13.84288 -13.48590 -13.44597 -12.94602 -12.68546 -12.45160 -12.38281 -12.10374 -12.09176 -11.89064 -11.44875 -11.30617 -11.26043 -11.16823 -10.46662 -10.25849 -10.04827 -10.02655 -9.62280 -9.53120 -5.19512 -0.46548 0.03114 0.27402 0.30144 0.61516 0.63630 0.72978 1.19114 1.59775 1.87737 1.97025 2.15408 2.54048 3.32190 3.40014 3.61312 3.64079 3.69464 3.79504 3.80673 3.92110 3.93088 3.94420 4.15909 4.17558 4.33679 4.38981 4.41336 4.58855 4.60137 4.68649 4.74145 4.79358 4.85405 4.90540 4.97829 5.01513 5.06198 5.09665 5.21475 5.21788 5.44881 5.60753 5.81605 6.37400 6.83480 7.05985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.050 4.050 3 Si 0.758 3.242 4 C -0.211 4.211 5 C -0.071 4.071 6 C -0.178 4.178 7 C 0.581 3.419 8 O -0.578 6.578 9 N -0.692 5.692 10 C 0.113 3.887 11 H 0.087 0.913 12 C -0.142 4.142 13 C -0.066 4.066 14 H 0.117 0.883 15 C -0.057 4.057 16 C -0.115 4.115 17 C -0.099 4.099 18 C -0.110 4.110 19 Br -0.063 7.063 20 C -0.099 4.099 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.182 4.182 24 S 0.184 5.816 25 H 0.406 0.594 26 H 0.100 0.900 27 H -0.270 1.270 28 H -0.263 1.263 29 H 0.143 0.857 30 H 0.415 0.585 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 6.614 -1.284 6.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.162 4.162 3 Si 0.659 3.341 4 C -0.328 4.328 5 C -0.100 4.100 6 C -0.196 4.196 7 C 0.368 3.632 8 O -0.459 6.459 9 N -0.344 5.344 10 C 0.007 3.993 11 H 0.105 0.895 12 C -0.180 4.180 13 C -0.084 4.084 14 H 0.135 0.865 15 C -0.057 4.057 16 C -0.133 4.133 17 C -0.119 4.119 18 C -0.189 4.189 19 Br 0.022 6.978 20 C -0.119 4.119 21 C -0.131 4.131 22 C -0.161 4.161 23 C -0.319 4.319 24 S 0.450 5.550 25 H 0.257 0.743 26 H 0.118 0.882 27 H -0.196 1.196 28 H -0.188 1.188 29 H 0.160 0.840 30 H 0.252 0.748 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.310 7.283 -0.064 7.641 hybrid contribution -0.449 -1.861 -0.048 1.915 sum 1.861 5.422 -0.112 5.734 Atomic orbital electron populations 1.86471 1.17018 1.82530 1.51459 1.24314 0.85986 1.10997 0.94865 0.93603 0.79018 0.75251 0.86188 1.23798 1.09143 0.97277 1.02540 1.21073 0.98263 0.94855 0.95778 1.20165 1.07373 0.94124 0.97959 1.17762 0.77557 0.86871 0.81032 1.90795 1.45368 1.50929 1.58758 1.45363 1.56590 1.11555 1.20876 1.21911 0.99006 0.82510 0.95837 0.89508 1.23568 0.96566 1.01319 0.96596 1.21644 0.95354 0.98187 0.93207 0.86524 1.19997 0.95475 0.94265 0.95964 1.21252 1.00337 0.92651 0.99098 1.21300 0.94824 1.01086 0.94670 1.21988 1.01796 0.94504 1.00629 1.96755 1.79468 1.57991 1.63559 1.21331 0.99932 0.91145 0.99463 1.21347 0.95947 1.00647 0.95131 1.23385 0.94556 1.04589 0.93597 1.26144 1.03261 0.97025 1.05503 1.83215 1.50558 1.10138 1.11072 0.74258 0.88196 1.19626 1.18849 0.83960 0.74757 0.88202 0.91305 0.83645 0.84478 0.84302 0.83061 0.89187 0.87832 0.77503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.03 12.85 -148.98 -1.92 -1.95 16 2 C -0.05 0.05 2.93 71.23 0.21 0.26 16 3 Si 0.76 -3.11 30.92 68.60 2.12 -0.99 16 4 C -0.21 -0.87 5.69 24.51 0.14 -0.73 16 5 C -0.07 -0.51 9.95 22.67 0.23 -0.29 16 6 C -0.18 -0.84 5.98 -19.87 -0.12 -0.96 16 7 C 0.58 4.01 7.79 86.60 0.67 4.68 16 8 O -0.58 -9.20 16.40 -4.15 -0.07 -9.27 16 9 N -0.69 0.92 5.23 -443.51 -2.32 -1.40 16 10 C 0.11 -0.18 4.32 45.52 0.20 0.02 16 11 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 12 C -0.14 0.47 7.26 31.13 0.23 0.70 16 13 C -0.07 0.42 3.85 -11.01 -0.04 0.38 16 14 H 0.12 -1.12 8.09 -2.39 -0.02 -1.14 16 15 C -0.06 0.18 5.29 -19.86 -0.11 0.08 16 16 C -0.11 0.22 8.60 22.27 0.19 0.41 16 17 C -0.10 -0.07 9.79 22.29 0.22 0.15 16 18 C -0.11 -0.26 6.22 22.31 0.14 -0.12 16 19 Br -0.06 -0.23 33.70 -20.37 -0.69 -0.91 16 20 C -0.10 -0.01 9.79 22.29 0.22 0.21 16 21 C -0.11 0.32 9.71 22.26 0.22 0.54 16 22 C -0.12 0.77 7.29 31.12 0.23 1.00 16 23 C -0.18 0.29 10.38 67.30 0.70 0.99 16 24 S 0.18 0.13 20.20 -56.49 -1.14 -1.01 16 25 H 0.41 -4.41 8.74 -74.05 -0.65 -5.06 16 26 H 0.10 -0.45 7.96 -2.38 -0.02 -0.47 16 27 H -0.27 -0.52 7.11 99.48 0.71 0.19 16 28 H -0.26 0.03 7.11 99.48 0.71 0.74 16 29 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.41 -3.35 7.20 -92.71 -0.67 -4.02 16 31 H 0.10 -0.37 6.33 -2.39 -0.02 -0.39 16 32 H 0.07 -0.09 8.14 -2.39 -0.02 -0.10 16 33 H 0.15 -0.75 6.68 -2.91 -0.02 -0.76 16 34 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 35 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 36 H 0.15 -1.15 8.05 -2.91 -0.02 -1.17 16 37 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.10 -0.65 7.72 -2.39 -0.02 -0.67 16 39 H 0.21 -2.09 7.01 -2.91 -0.02 -2.12 16 Total: 0.00 -21.94 364.08 -0.86 -22.80 By element: Atomic # 1 Polarization: -14.40 SS G_CDS: -0.16 Total: -14.56 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 3.31 Total: 7.30 kcal Atomic # 7 Polarization: 0.92 SS G_CDS: -2.32 Total: -1.40 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.98 Total: -11.22 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.12 Total: -0.99 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.14 Total: -1.01 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.91 kcal Total: -21.94 -0.86 -22.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10390340_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.423 kcal (2) G-P(sol) polarization free energy of solvation -21.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds