Wall clock time and date at job start Sat Mar 6 2021 13:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.46832 * 304.99800 * 3 2 1 5 5 C 1.53006 * 109.47127 * 64.99479 * 3 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 3 8 8 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 9 9 N 1.46499 * 109.46840 * 180.02562 * 7 6 5 10 10 C 1.34782 * 120.00074 * 155.00031 * 9 7 6 11 11 O 1.21588 * 119.99747 * 359.97438 * 10 9 7 12 12 C 1.47583 * 119.99949 * 180.02562 * 10 9 7 13 13 C 1.40195 * 119.83348 * 359.72077 * 12 10 9 14 14 C 1.36235 * 120.38096 * 179.76113 * 13 12 10 15 15 C 1.39875 * 119.95451 * 0.51504 * 14 13 12 16 16 C 1.46263 * 133.84311 * 179.74014 * 15 14 13 17 17 C 1.50700 * 126.48005 * 0.02562 * 16 15 14 18 18 O 1.42898 * 109.47125 * 75.00057 * 17 16 15 19 19 Si 1.86304 * 109.46945 * 194.99965 * 17 16 15 20 20 C 1.34454 * 107.03494 * 179.97438 * 16 15 14 21 21 N 1.36558 * 109.98558 * 0.02562 * 20 16 15 22 22 C 1.37830 * 109.86329 * 359.97438 * 21 20 16 23 23 C 1.38644 * 133.37800 * 180.02562 * 22 21 20 24 24 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 25 25 C 1.52997 * 109.47232 * 184.99601 * 3 2 1 26 26 H 1.09002 * 109.46818 * 59.99962 * 1 2 3 27 27 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47725 * 300.00215 * 1 2 3 29 29 H 1.09004 * 109.47242 * 239.99518 * 2 1 3 30 30 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 31 31 H 1.08998 * 109.46505 * 59.99871 * 5 3 2 32 32 H 1.08996 * 109.46884 * 300.00752 * 5 3 2 33 33 H 1.09002 * 109.47153 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.46832 * 60.00321 * 6 5 3 35 35 H 0.97002 * 120.00427 * 334.99530 * 9 7 6 36 36 H 1.08004 * 119.81028 * 359.97438 * 13 12 10 37 37 H 1.07996 * 120.02334 * 180.25903 * 14 13 12 38 38 H 1.08998 * 109.47520 * 314.99865 * 17 16 15 39 39 H 0.96704 * 113.99757 * 180.02562 * 18 17 16 40 40 H 1.48501 * 109.99884 * 299.99690 * 19 17 16 41 41 H 1.48495 * 110.00011 * 61.31839 * 19 17 16 42 42 H 1.08003 * 125.00144 * 180.02562 * 20 16 15 43 43 H 0.97006 * 125.06591 * 180.02562 * 21 20 16 44 44 H 1.07994 * 120.16605 * 0.02562 * 23 22 21 45 45 H 1.08992 * 109.47554 * 59.99639 * 24 7 6 46 46 H 1.09004 * 109.47108 * 179.97438 * 24 7 6 47 47 H 1.09002 * 109.47045 * 59.99942 * 25 3 2 48 48 H 1.09001 * 109.47375 * 299.99867 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5688 1.3076 7 6 3.6706 3.5700 1.1822 8 1 4.1049 3.0308 2.0241 9 7 4.1595 4.9510 1.1831 10 6 5.4183 5.2200 1.5827 11 8 6.1479 4.3166 1.9429 12 6 5.9106 6.6113 1.5841 13 6 5.0679 7.6498 1.1635 14 6 5.5092 8.9387 1.1649 15 6 6.8136 9.2298 1.5776 16 6 7.5874 10.4655 1.6939 17 6 7.1103 11.8560 1.3625 18 8 6.2290 12.3146 2.3896 19 14 8.5738 13.0026 1.2424 20 6 8.8046 10.1263 2.1535 21 7 8.8732 8.7752 2.3401 22 6 7.6714 8.1936 1.9977 23 6 7.2123 6.8854 1.9984 24 6 4.0754 2.8860 -0.1251 25 6 3.5648 1.4443 -0.1256 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0697 1.5875 2.1491 32 1 0.5489 2.1252 1.3968 33 1 1.8577 4.0561 2.2392 34 1 1.7115 4.1081 0.4657 35 1 3.5774 5.6719 0.8960 36 1 4.0619 7.4271 0.8398 37 1 4.8538 9.7346 0.8437 38 1 6.5812 11.8412 0.4097 39 1 5.8820 13.2051 2.2416 40 1 9.3036 13.0318 2.5353 41 1 9.4821 12.5546 0.1564 42 1 9.6095 10.8201 2.3465 43 1 9.6514 8.2964 2.6659 44 1 7.8602 6.0830 2.3187 45 1 3.6412 3.4252 -0.9669 46 1 5.1618 2.8873 -0.2146 47 1 3.8532 0.9569 -1.0570 48 1 3.9995 0.9052 0.7162 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_10466078_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:31:02 Heat of formation + Delta-G solvation = -28.682826 kcal Electronic energy + Delta-G solvation = -27528.222265 eV Core-core repulsion = 23741.832624 eV Total energy + Delta-G solvation = -3786.389641 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.47201 -41.05868 -39.53332 -37.80233 -37.45562 -36.04493 -33.48602 -33.33556 -31.80253 -30.82268 -30.71249 -28.95232 -26.47453 -25.28421 -24.07896 -23.60113 -23.44619 -21.70089 -21.32281 -20.75276 -20.54301 -19.20816 -18.37586 -18.24939 -17.55586 -16.95589 -16.35548 -15.97229 -15.69495 -15.63395 -15.51924 -15.27330 -15.05795 -15.03246 -14.79024 -14.73681 -14.53465 -14.38738 -14.15680 -13.80441 -13.74395 -13.22237 -13.18247 -12.85123 -12.70602 -12.58984 -12.52166 -12.11526 -12.08547 -12.06543 -11.90292 -11.78710 -11.45493 -11.25200 -11.02359 -10.75329 -10.74295 -10.23249 -9.97631 -9.33938 -8.81186 -5.04928 -0.24052 0.41253 1.26831 1.33281 1.62556 1.88094 1.93097 2.05833 2.27498 2.96125 3.52315 3.56804 3.66220 3.69776 3.70982 3.75887 3.88795 3.99525 4.05193 4.11154 4.16046 4.24382 4.34411 4.37878 4.40791 4.46543 4.48187 4.52571 4.54646 4.58165 4.65550 4.73138 4.76436 4.81632 4.97413 4.99919 5.08338 5.12815 5.13783 5.17652 5.19856 5.25736 5.29459 5.31937 5.44403 5.46421 5.47860 5.54726 5.60648 5.61613 5.99241 6.35364 6.57316 6.69746 7.31281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.112 4.112 6 C -0.127 4.127 7 C 0.146 3.854 8 H 0.089 0.911 9 N -0.723 5.723 10 C 0.564 3.436 11 O -0.538 6.538 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.070 4.070 15 C -0.063 4.063 16 C -0.163 4.163 17 C -0.034 4.034 18 O -0.547 6.547 19 Si 0.684 3.316 20 C 0.071 3.929 21 N -0.583 5.583 22 C 0.082 3.918 23 C -0.056 4.056 24 C -0.129 4.129 25 C -0.112 4.112 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.071 0.929 39 H 0.379 0.621 40 H -0.254 1.254 41 H -0.256 1.256 42 H 0.170 0.830 43 H 0.422 0.578 44 H 0.136 0.864 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 4.663 -2.378 5.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.108 4.108 4 H 0.089 0.911 5 C -0.150 4.150 6 C -0.165 4.165 7 C 0.042 3.958 8 H 0.107 0.893 9 N -0.374 5.374 10 C 0.352 3.648 11 O -0.416 6.416 12 C -0.125 4.125 13 C -0.133 4.133 14 C -0.089 4.089 15 C -0.068 4.068 16 C -0.171 4.171 17 C -0.145 4.145 18 O -0.353 6.353 19 Si 0.585 3.415 20 C -0.057 4.057 21 N -0.185 5.185 22 C -0.024 4.024 23 C -0.078 4.078 24 C -0.167 4.167 25 C -0.150 4.150 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.226 0.774 40 H -0.178 1.178 41 H -0.180 1.180 42 H 0.187 0.813 43 H 0.260 0.740 44 H 0.154 0.846 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.609 3.428 -1.770 3.906 hybrid contribution -0.015 -0.312 -0.015 0.313 sum -0.625 3.116 -1.785 3.645 Atomic orbital electron populations 1.21829 0.95817 1.01693 1.01887 1.21573 0.95966 0.96174 1.02134 1.21240 0.95450 0.96092 0.98018 0.91063 1.21586 1.01098 0.94419 0.97879 1.21819 0.93850 0.98199 1.02617 1.21033 0.94051 0.81710 0.99042 0.89285 1.45988 1.13932 1.09773 1.67720 1.18141 0.81695 0.88233 0.76752 1.90788 1.55965 1.47176 1.47655 1.19457 0.94560 0.92951 1.05482 1.20688 0.99288 0.92096 1.01215 1.20173 0.93643 0.96391 0.98672 1.19150 0.94114 0.91607 1.01888 1.19617 0.93693 0.92737 1.11047 1.23934 1.02403 0.95372 0.92773 1.86543 1.65490 1.36718 1.46528 0.95102 0.77894 0.87789 0.80714 1.21645 0.98918 0.84276 1.00900 1.41672 1.12973 1.06345 1.57557 1.18079 0.86732 0.93923 1.03649 1.20072 0.95232 0.93129 0.99332 1.21906 1.01588 0.96026 0.97223 1.21546 0.95046 0.96074 1.02366 0.92786 0.92803 0.92473 0.91951 0.91924 0.91584 0.91055 0.91168 0.91292 0.76457 0.85535 0.85133 0.91108 0.77361 1.17818 1.18043 0.81332 0.73972 0.84570 0.91756 0.91369 0.91588 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.13 9.67 37.16 0.36 0.49 16 2 C -0.12 0.08 5.40 -26.73 -0.14 -0.07 16 3 C -0.09 0.07 2.19 -90.62 -0.20 -0.13 16 4 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 5 C -0.11 0.12 4.96 -26.73 -0.13 -0.02 16 6 C -0.13 0.15 5.39 -26.73 -0.14 0.01 16 7 C 0.15 0.11 2.45 -67.93 -0.17 -0.06 16 8 H 0.09 0.25 7.58 -51.93 -0.39 -0.14 16 9 N -0.72 -0.55 5.03 -54.83 -0.28 -0.82 16 10 C 0.56 2.10 7.73 -12.45 -0.10 2.00 16 11 O -0.54 -3.88 15.97 5.29 0.08 -3.79 16 12 C -0.12 -0.34 5.87 -104.95 -0.62 -0.96 16 13 C -0.11 -0.11 9.46 -39.57 -0.37 -0.48 16 14 C -0.07 -0.12 10.03 -39.69 -0.40 -0.52 16 15 C -0.06 -0.21 6.35 -105.04 -0.67 -0.87 16 16 C -0.16 -0.40 5.60 -102.74 -0.58 -0.98 16 17 C -0.03 0.00 3.05 36.01 0.11 0.11 16 18 O -0.55 -0.16 12.86 -35.23 -0.45 -0.61 16 19 Si 0.68 -1.17 30.79 -169.99 -5.23 -6.41 16 20 C 0.07 0.10 10.43 -16.78 -0.18 -0.08 16 21 N -0.58 -0.59 6.07 -10.68 -0.06 -0.65 16 22 C 0.08 0.25 7.26 -84.00 -0.61 -0.36 16 23 C -0.06 -0.18 9.61 -39.03 -0.37 -0.56 16 24 C -0.13 -0.10 5.49 -26.76 -0.15 -0.25 16 25 C -0.11 -0.01 5.20 -26.76 -0.14 -0.15 16 26 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 27 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.06 -0.06 6.56 -51.93 -0.34 -0.40 16 29 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 31 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.07 -0.10 6.56 -51.93 -0.34 -0.44 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 35 H 0.40 -0.71 6.59 -40.82 -0.27 -0.97 16 36 H 0.13 -0.26 6.36 -52.48 -0.33 -0.59 16 37 H 0.13 -0.01 8.06 -52.49 -0.42 -0.43 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 39 H 0.38 -1.84 8.74 45.56 0.40 -1.45 16 40 H -0.25 -0.23 7.04 56.52 0.40 0.16 16 41 H -0.26 -0.23 7.11 56.52 0.40 0.17 16 42 H 0.17 -0.11 6.30 -52.48 -0.33 -0.44 16 43 H 0.42 -0.82 8.96 -40.82 -0.37 -1.19 16 44 H 0.14 0.41 7.62 -52.49 -0.40 0.01 16 45 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 48 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 LS Contribution 380.02 15.07 5.73 5.73 Total: 0.00 -8.71 380.02 -12.19 -20.91 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: -7.49 Total: -11.48 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -4.49 Total: -2.87 kcal Atomic # 7 Polarization: -1.13 SS G_CDS: -0.34 Total: -1.47 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.37 Total: -4.40 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -5.23 Total: -6.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -8.71 -12.19 -20.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466078_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.774 kcal (2) G-P(sol) polarization free energy of solvation -8.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds