Wall clock time and date at job start Sat Mar 6 2021 13:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08992 * 109.47514 * 305.00424 * 3 2 1 5 5 C 1.53002 * 109.46637 * 65.00295 * 3 2 1 6 6 C 1.52997 * 109.46817 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47452 * 300.00239 * 6 5 3 8 8 H 1.09002 * 109.46935 * 300.00125 * 7 6 5 9 9 N 1.46496 * 109.47414 * 180.02562 * 7 6 5 10 10 C 1.34778 * 120.00072 * 154.99744 * 9 7 6 11 11 O 1.21273 * 120.00144 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99935 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47166 * 179.97438 * 12 10 9 14 14 C 1.46891 * 111.00178 * 293.95603 * 13 12 10 15 15 C 1.39675 * 110.99994 * 169.99946 * 13 12 10 16 16 C 1.38890 * 120.07416 * 240.00233 * 15 13 12 17 17 C 1.50698 * 120.03896 * 359.97438 * 16 15 13 18 18 O 1.42902 * 109.47240 * 285.00195 * 17 16 15 19 19 Si 1.86301 * 109.47540 * 165.00125 * 17 16 15 20 20 C 1.38123 * 119.92558 * 179.97438 * 16 15 13 21 21 C 1.38260 * 120.07683 * 359.97438 * 20 16 15 22 22 C 1.50698 * 119.93166 * 179.97438 * 21 20 16 23 23 F 1.39901 * 109.47104 * 89.99667 * 22 21 20 24 24 F 1.39892 * 109.47754 * 210.00070 * 22 21 20 25 25 F 1.39904 * 109.46948 * 330.00222 * 22 21 20 26 26 C 1.38312 * 120.14550 * 0.02562 * 21 20 16 27 27 C 1.38082 * 120.07538 * 359.74985 * 26 21 20 28 28 C 1.52999 * 109.47159 * 59.99536 * 7 6 5 29 29 C 1.52997 * 109.47317 * 300.00546 * 28 7 6 30 30 H 1.09000 * 109.47476 * 59.99602 * 1 2 3 31 31 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47243 * 300.00091 * 1 2 3 33 33 H 1.09008 * 109.46970 * 240.00359 * 2 1 3 34 34 H 1.09000 * 109.47017 * 120.00667 * 2 1 3 35 35 H 1.08993 * 109.47662 * 299.99908 * 5 3 2 36 36 H 1.09002 * 109.47075 * 60.00414 * 5 3 2 37 37 H 1.09002 * 109.47153 * 60.00231 * 6 5 3 38 38 H 1.09001 * 109.47289 * 180.02562 * 6 5 3 39 39 H 0.97007 * 119.99693 * 334.99885 * 9 7 6 40 40 H 1.08999 * 109.47030 * 300.00189 * 12 10 9 41 41 H 1.09005 * 109.47169 * 59.99938 * 12 10 9 42 42 H 1.08995 * 109.47429 * 59.99708 * 14 13 12 43 43 H 1.08997 * 109.47538 * 179.97438 * 14 13 12 44 44 H 1.09008 * 109.47215 * 299.99967 * 14 13 12 45 45 H 1.08999 * 109.47626 * 44.99787 * 17 16 15 46 46 H 0.96705 * 113.99894 * 59.99440 * 18 17 16 47 47 H 1.48505 * 109.99731 * 300.00047 * 19 17 16 48 48 H 1.48496 * 109.99843 * 61.31258 * 19 17 16 49 49 H 1.08000 * 119.96323 * 179.97438 * 20 16 15 50 50 H 1.08001 * 119.95977 * 180.02562 * 26 21 20 51 51 H 1.07999 * 120.03387 * 180.27195 * 27 26 21 52 52 H 1.08996 * 109.46929 * 179.97438 * 28 7 6 53 53 H 1.09002 * 109.46716 * 60.00455 * 28 7 6 54 54 H 1.09002 * 109.47153 * 299.99641 * 29 28 7 55 55 H 1.09001 * 109.46832 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1264 1.3074 6 6 2.1457 3.5687 1.3078 7 6 3.6706 3.5701 1.1822 8 1 4.1050 3.0307 2.0240 9 7 4.1595 4.9510 1.1831 10 6 5.4183 5.2200 1.5827 11 8 6.1461 4.3189 1.9419 12 6 5.9214 6.6406 1.5831 13 7 7.3113 6.6677 2.0577 14 6 7.3937 6.2674 3.4686 15 6 7.8832 7.9267 1.8603 16 6 9.0103 8.0614 1.0601 17 6 9.6187 6.8490 0.4037 18 8 10.3259 6.0827 1.3808 19 14 10.7983 7.3922 -0.9322 20 6 9.5730 9.3079 0.8666 21 6 9.0152 10.4209 1.4680 22 6 9.6321 11.7792 1.2551 23 9 9.0532 12.3838 0.1341 24 9 9.4070 12.5757 2.3829 25 9 11.0090 11.6391 1.0505 26 6 7.8927 10.2902 2.2655 27 6 7.3224 9.0477 2.4594 28 6 4.0754 2.8860 -0.1251 29 6 3.5648 1.4437 -0.1255 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.5490 2.1251 1.3971 36 1 2.0699 1.5874 2.1492 37 1 1.7114 4.1081 0.4660 38 1 1.8578 4.0559 2.2394 39 1 3.5772 5.6718 0.8962 40 1 5.8747 7.0428 0.5711 41 1 5.3004 7.2458 2.2436 42 1 7.0052 5.2554 3.5825 43 1 8.4335 6.2957 3.7943 44 1 6.8035 6.9536 4.0761 45 1 8.8294 6.2386 -0.0349 46 1 9.7727 5.7661 2.1081 47 1 10.0750 8.1901 -1.9547 48 1 11.8969 8.1987 -0.3424 49 1 10.4497 9.4133 0.2448 50 1 7.4592 11.1617 2.7335 51 1 6.4434 8.9471 3.0787 52 1 5.1616 2.8874 -0.2147 53 1 3.6410 3.4254 -0.9669 54 1 3.9991 0.9044 0.7163 55 1 3.8528 0.9566 -1.0571 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466078_6406254.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:34:21 Heat of formation + Delta-G solvation = -187.511363 kcal Electronic energy + Delta-G solvation = -39221.491636 eV Core-core repulsion = 33809.692169 eV Total energy + Delta-G solvation = -5411.799466 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.196 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -51.38427 -48.90929 -48.84532 -41.88237 -40.95381 -39.55778 -37.75198 -37.59880 -36.01163 -33.51153 -33.11438 -32.23009 -31.76366 -30.10502 -28.50274 -27.68164 -27.00306 -25.31286 -24.56158 -23.60322 -23.37164 -22.19381 -21.64313 -21.42331 -20.65539 -19.73672 -19.68373 -19.57512 -18.50788 -18.18952 -17.87602 -17.21090 -16.98768 -16.54028 -16.30721 -16.08202 -15.81197 -15.76575 -15.72104 -15.55415 -15.45740 -15.27385 -15.10733 -15.04640 -15.00499 -15.00174 -14.82298 -14.73797 -14.38766 -14.26107 -14.07406 -13.99121 -13.75415 -13.64178 -13.35461 -13.19486 -13.08796 -12.89069 -12.76071 -12.66789 -12.52914 -12.31175 -12.10103 -12.05465 -11.75074 -11.46109 -11.41656 -11.23401 -11.08809 -10.99995 -10.78212 -10.37187 -10.20513 -10.03090 -9.68984 -4.90222 -0.49947 -0.13002 1.29943 1.41904 1.55155 1.62744 1.86359 1.91076 2.05556 2.47345 2.66754 2.77237 3.17702 3.39988 3.45463 3.61473 3.69253 3.74098 3.79746 3.86317 3.95539 3.96286 4.02922 4.10247 4.12405 4.18805 4.24756 4.33038 4.38544 4.40159 4.40955 4.45630 4.50952 4.53445 4.55589 4.56391 4.71645 4.78235 4.79796 4.84131 4.85135 4.96250 5.02927 5.05299 5.11934 5.15647 5.17520 5.20643 5.24827 5.26189 5.30679 5.35514 5.51395 5.53008 5.56935 5.61280 6.01112 6.57601 6.59089 7.28993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.112 4.112 6 C -0.118 4.118 7 C 0.151 3.849 8 H 0.064 0.936 9 N -0.717 5.717 10 C 0.515 3.485 11 O -0.558 6.558 12 C 0.039 3.961 13 N -0.502 5.502 14 C 0.023 3.977 15 C 0.136 3.864 16 C -0.099 4.099 17 C -0.071 4.071 18 O -0.544 6.544 19 Si 0.788 3.212 20 C -0.083 4.083 21 C -0.187 4.187 22 C 0.507 3.493 23 F -0.179 7.179 24 F -0.173 7.173 25 F -0.185 7.185 26 C -0.052 4.052 27 C -0.134 4.134 28 C -0.122 4.122 29 C -0.111 4.111 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.415 0.585 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.372 0.628 47 H -0.261 1.261 48 H -0.287 1.287 49 H 0.126 0.874 50 H 0.161 0.839 51 H 0.166 0.834 52 H 0.045 0.955 53 H 0.072 0.928 54 H 0.054 0.946 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -1.080 -0.280 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.102 4.102 4 H 0.093 0.907 5 C -0.150 4.150 6 C -0.156 4.156 7 C 0.047 3.953 8 H 0.082 0.918 9 N -0.370 5.370 10 C 0.301 3.699 11 O -0.435 6.435 12 C -0.091 4.091 13 N -0.224 5.224 14 C -0.123 4.123 15 C 0.042 3.958 16 C -0.100 4.100 17 C -0.180 4.180 18 O -0.351 6.351 19 Si 0.690 3.310 20 C -0.102 4.102 21 C -0.189 4.189 22 C 0.453 3.547 23 F -0.160 7.160 24 F -0.154 7.154 25 F -0.167 7.167 26 C -0.070 4.070 27 C -0.154 4.154 28 C -0.161 4.161 29 C -0.149 4.149 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.251 0.749 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.221 0.779 47 H -0.186 1.186 48 H -0.214 1.214 49 H 0.143 0.857 50 H 0.178 0.822 51 H 0.184 0.816 52 H 0.064 0.936 53 H 0.090 0.910 54 H 0.073 0.927 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.953 -1.269 -1.088 7.151 hybrid contribution -1.259 1.459 1.403 2.384 sum -8.212 0.189 0.316 8.220 Atomic orbital electron populations 1.21822 0.95526 1.01667 1.02126 1.21571 0.96194 0.96348 1.01805 1.21181 0.94641 0.96000 0.98384 0.90686 1.21582 1.01460 0.94660 0.97267 1.21755 0.92477 0.97995 1.03373 1.20892 0.94886 0.81852 0.97704 0.91794 1.45970 1.13686 1.09983 1.67321 1.20669 0.81706 0.91124 0.76412 1.90706 1.56364 1.48537 1.47914 1.22164 0.88276 0.94057 1.04554 1.59152 1.18013 1.23147 1.22050 1.22648 1.02943 1.02355 0.84366 1.18827 0.93187 0.89237 0.94586 1.20322 0.96094 0.94718 0.98877 1.25206 1.03885 0.91166 0.97739 1.86674 1.38866 1.71560 1.37993 0.92377 0.77897 0.83301 0.77466 1.20786 0.98942 0.92060 0.98379 1.19980 1.01404 0.91081 1.06409 1.18391 0.75924 0.86261 0.74114 1.93234 1.84219 1.85337 1.53201 1.93203 1.94293 1.76315 1.51636 1.93197 1.32645 1.95967 1.94870 1.21134 0.92096 0.99789 0.94024 1.21961 1.01679 0.91399 1.00354 1.21827 1.00094 0.96370 0.97788 1.21529 0.95682 0.95843 1.01854 0.92600 0.93048 0.92113 0.92235 0.92389 0.90389 0.92415 0.89997 0.90689 0.74882 0.86187 0.88184 0.89722 0.91013 0.93358 0.89287 0.77875 1.18631 1.21447 0.85662 0.82173 0.81629 0.93625 0.90955 0.92727 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 9.67 71.98 0.70 1.22 16 2 C -0.12 0.34 5.40 30.59 0.17 0.50 16 3 C -0.08 0.32 2.19 -10.79 -0.02 0.30 16 4 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 5 C -0.11 0.57 4.96 30.59 0.15 0.72 16 6 C -0.12 0.81 5.39 30.60 0.16 0.97 16 7 C 0.15 -0.46 2.45 44.99 0.11 -0.35 16 8 H 0.06 0.15 7.58 -2.39 -0.02 0.14 16 9 N -0.72 4.21 5.08 -442.54 -2.25 1.97 16 10 C 0.51 -0.77 7.52 87.66 0.66 -0.11 16 11 O -0.56 -4.05 13.97 -3.01 -0.04 -4.09 16 12 C 0.04 -0.25 5.03 85.56 0.43 0.18 16 13 N -0.50 1.20 3.22 -724.46 -2.33 -1.13 16 14 C 0.02 -0.06 8.63 127.69 1.10 1.05 16 15 C 0.14 -0.19 4.61 38.21 0.18 -0.01 16 16 C -0.10 -0.28 5.28 -19.74 -0.10 -0.39 16 17 C -0.07 -0.22 2.30 71.24 0.16 -0.05 16 18 O -0.54 -3.10 12.65 -148.98 -1.89 -4.99 16 19 Si 0.79 1.92 30.41 68.60 2.09 4.00 16 20 C -0.08 -0.41 8.01 22.25 0.18 -0.23 16 21 C -0.19 -0.57 5.46 -19.84 -0.11 -0.67 16 22 C 0.51 2.63 3.36 71.24 0.24 2.87 16 23 F -0.18 -1.10 17.30 44.97 0.78 -0.33 16 24 F -0.17 -0.79 16.46 44.97 0.74 -0.05 16 25 F -0.19 -1.54 16.46 44.97 0.74 -0.80 16 26 C -0.05 0.12 9.39 22.25 0.21 0.33 16 27 C -0.13 0.64 8.70 22.40 0.19 0.84 16 28 C -0.12 0.18 5.50 30.59 0.17 0.35 16 29 C -0.11 0.18 5.20 30.59 0.16 0.34 16 30 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.06 -0.25 6.57 -2.38 -0.02 -0.27 16 33 H 0.06 -0.12 8.14 -2.38 -0.02 -0.14 16 34 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.08 -0.47 6.56 -2.39 -0.02 -0.49 16 36 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.41 -4.96 8.60 -92.70 -0.80 -5.75 16 40 H 0.12 -1.05 8.06 -2.39 -0.02 -1.07 16 41 H 0.10 -1.19 7.46 -2.38 -0.02 -1.21 16 42 H 0.08 0.13 5.88 -2.39 -0.01 0.12 16 43 H 0.07 -0.14 7.53 -2.39 -0.02 -0.15 16 44 H 0.05 -0.28 7.49 -2.38 -0.02 -0.30 16 45 H 0.09 0.16 7.78 -2.39 -0.02 0.14 16 46 H 0.37 1.19 7.59 -74.05 -0.56 0.63 16 47 H -0.26 -1.16 7.11 99.48 0.71 -0.45 16 48 H -0.29 -2.47 6.81 99.48 0.68 -1.79 16 49 H 0.13 0.85 4.48 -2.91 -0.01 0.83 16 50 H 0.16 -1.00 7.60 -2.91 -0.02 -1.02 16 51 H 0.17 -1.76 7.16 -2.91 -0.02 -1.78 16 52 H 0.04 0.16 8.14 -2.39 -0.02 0.15 16 53 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 54 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 55 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: 0.00 -14.86 436.54 2.15 -12.71 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -0.42 Total: -15.13 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 4.73 Total: 7.83 kcal Atomic # 7 Polarization: 5.42 SS G_CDS: -4.58 Total: 0.84 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.93 Total: -9.08 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 2.26 Total: -1.17 kcal Atomic # 14 Polarization: 1.92 SS G_CDS: 2.09 Total: 4.00 kcal Total: -14.86 2.15 -12.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466078_6406254.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.801 kcal (2) G-P(sol) polarization free energy of solvation -14.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds