Wall clock time and date at job start Sat Mar 6 2021 16:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37653 * 125.67697 * 2 1 4 4 C 1.46678 * 126.22952 * 359.97438 * 3 2 1 5 5 O 1.21692 * 120.00418 * 354.45836 * 4 3 2 6 6 N 1.34776 * 119.99690 * 174.45538 * 4 3 2 7 7 C 1.46502 * 120.00388 * 185.06664 * 6 4 3 8 8 H 1.09004 * 112.84493 * 334.66884 * 7 6 4 9 9 C 1.53779 * 113.61252 * 105.86252 * 7 6 4 10 10 C 1.54056 * 86.98405 * 89.16695 * 9 7 6 11 11 H 1.09003 * 113.68478 * 270.86858 * 10 9 7 12 12 C 1.50698 * 113.61637 * 139.97684 * 10 9 7 13 13 C 1.38247 * 119.97967 * 322.22446 * 12 10 9 14 14 C 1.38193 * 120.02732 * 179.76547 * 13 12 10 15 15 C 1.38461 * 119.97413 * 0.51805 * 14 13 12 16 16 F 1.35097 * 120.02516 * 179.76607 * 15 14 13 17 17 C 1.38455 * 119.94667 * 359.73617 * 15 14 13 18 18 C 1.38194 * 119.97881 * 0.02562 * 17 15 14 19 19 C 1.53774 * 113.61655 * 203.47341 * 7 6 4 20 20 C 1.37867 * 107.53505 * 179.97438 * 3 2 1 21 21 C 1.39840 * 107.08325 * 359.97438 * 20 3 2 22 22 C 1.35447 * 107.86703 * 0.02562 * 21 20 3 23 23 C 1.50703 * 125.56899 * 179.97438 * 22 21 20 24 24 O 1.42890 * 109.47531 * 210.04397 * 23 22 21 25 25 Si 1.86301 * 109.46844 * 330.04302 * 23 22 21 26 26 H 1.09003 * 109.46986 * 94.57707 * 1 2 3 27 27 H 1.08999 * 109.47019 * 214.57604 * 1 2 3 28 28 H 1.08994 * 109.47162 * 334.57620 * 1 2 3 29 29 H 0.97010 * 119.99974 * 5.07142 * 6 4 3 30 30 H 1.09002 * 113.61280 * 203.67060 * 9 7 6 31 31 H 1.08996 * 113.61895 * 334.56837 * 9 7 6 32 32 H 1.08004 * 119.98023 * 0.02767 * 13 12 10 33 33 H 1.08001 * 120.01453 * 180.25389 * 14 13 12 34 34 H 1.08010 * 120.01264 * 179.97438 * 17 15 14 35 35 H 1.07999 * 119.99281 * 180.02562 * 18 17 15 36 36 H 1.09004 * 113.61924 * 25.42787 * 19 7 6 37 37 H 1.09005 * 113.61767 * 156.25031 * 19 7 6 38 38 H 1.07998 * 126.45846 * 179.73606 * 20 3 2 39 39 H 1.07997 * 126.06577 * 179.97438 * 21 20 3 40 40 H 1.09001 * 109.46581 * 90.03709 * 23 22 21 41 41 H 0.96701 * 113.99990 * 59.99817 * 24 23 22 42 42 H 1.48500 * 110.00045 * 179.97438 * 25 23 22 43 43 H 1.48498 * 110.00350 * 301.31948 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8123 2.5124 -0.0005 5 8 0.6263 2.7651 -0.1028 6 7 2.7073 3.5138 0.1123 7 6 2.2459 4.8997 0.2236 8 1 1.2625 5.0553 -0.2202 9 6 2.3815 5.4823 1.6403 10 6 3.7978 5.9306 1.2323 11 1 4.5665 5.1822 1.4250 12 6 4.1699 7.2975 1.7462 13 6 3.2211 8.3022 1.7865 14 6 3.5600 9.5547 2.2622 15 6 4.8531 9.8062 2.6885 16 9 5.1867 11.0316 3.1493 17 6 5.8038 8.8007 2.6428 18 6 5.4614 7.5476 2.1714 19 6 3.2927 5.9351 -0.2202 20 6 3.5780 0.6889 0.0006 21 6 3.5521 -0.7093 0.0015 22 6 2.2555 -1.1009 0.0009 23 6 1.7709 -2.5279 0.0011 24 8 0.5138 -2.6041 -0.6741 25 14 3.0126 -3.6055 -0.8751 26 1 -0.3633 -0.0820 -1.0244 27 1 -0.3633 -0.8461 0.5832 28 1 -0.3633 0.9281 0.4412 29 1 3.6572 3.3168 0.1198 30 1 1.7015 6.3107 1.8387 31 1 2.3705 4.7269 2.4259 32 1 2.2136 8.1069 1.4500 33 1 2.8176 10.3383 2.2974 34 1 6.8129 8.9958 2.9747 35 1 6.2027 6.7630 2.1360 36 1 4.0168 5.5450 -0.9355 37 1 2.8613 6.8867 -0.5309 38 1 4.4583 1.3145 -0.0033 39 1 4.4132 -1.3611 0.0018 40 1 1.6528 -2.8713 1.0288 41 1 0.5441 -2.3131 -1.5958 42 1 2.5466 -5.0155 -0.8813 43 1 3.2064 -3.1280 -2.2678 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466350_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:06:37 Heat of formation + Delta-G solvation = -4.384454 kcal Electronic energy + Delta-G solvation = -27166.970511 eV Core-core repulsion = 23095.029648 eV Total energy + Delta-G solvation = -4071.940863 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.90948 -42.60410 -41.40123 -40.02917 -38.57898 -37.86501 -34.85700 -33.64987 -32.11163 -31.77309 -30.88782 -27.52491 -27.15537 -26.68499 -25.67698 -24.09583 -23.35108 -22.55253 -21.54161 -20.56078 -20.08541 -18.92790 -18.71058 -18.21790 -17.45788 -17.20122 -17.00077 -16.64762 -16.61096 -16.24282 -16.08146 -15.59098 -15.48826 -15.21086 -14.91179 -14.75620 -14.45622 -14.41600 -14.23836 -14.16013 -13.90831 -13.78646 -13.63661 -13.42880 -13.28782 -12.96739 -12.89247 -12.41883 -12.17927 -11.96497 -11.83899 -11.66680 -11.25453 -11.19153 -10.86654 -10.17163 -10.05019 -9.73763 -9.47018 -9.08936 -4.86838 0.13459 0.28499 0.36566 1.19490 1.52975 1.73672 1.78107 2.02773 2.30867 2.34554 2.57260 3.19663 3.31494 3.46682 3.58102 3.66630 3.68103 3.78362 3.83959 3.95306 3.97286 3.98507 4.22822 4.26380 4.34142 4.37445 4.43591 4.50067 4.55133 4.62558 4.67708 4.79033 4.86218 4.91468 5.03482 5.05700 5.06819 5.10954 5.16080 5.19793 5.20926 5.30061 5.49950 5.65944 5.75325 5.94004 6.00367 6.13586 6.32067 6.48977 7.13075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.409 5.409 3 C -0.085 4.085 4 C 0.588 3.412 5 O -0.588 6.588 6 N -0.686 5.686 7 C 0.116 3.884 8 H 0.085 0.915 9 C -0.144 4.144 10 C -0.061 4.061 11 H 0.119 0.881 12 C -0.081 4.081 13 C -0.092 4.092 14 C -0.161 4.161 15 C 0.064 3.936 16 F -0.156 7.156 17 C -0.160 4.160 18 C -0.087 4.087 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.201 4.201 22 C 0.006 3.994 23 C -0.068 4.068 24 O -0.549 6.549 25 Si 0.817 3.183 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.418 0.582 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.132 0.868 41 H 0.384 0.616 42 H -0.299 1.299 43 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -2.924 -0.255 6.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.082 5.082 3 C -0.198 4.198 4 C 0.378 3.622 5 O -0.470 6.470 6 N -0.337 5.337 7 C 0.010 3.990 8 H 0.103 0.897 9 C -0.182 4.182 10 C -0.079 4.079 11 H 0.137 0.863 12 C -0.081 4.081 13 C -0.109 4.109 14 C -0.179 4.179 15 C 0.045 3.955 16 F -0.135 7.135 17 C -0.178 4.178 18 C -0.104 4.104 19 C -0.162 4.162 20 C -0.150 4.150 21 C -0.225 4.225 22 C -0.112 4.112 23 C -0.175 4.175 24 O -0.356 6.356 25 Si 0.719 3.281 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.256 0.744 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.195 0.805 39 H 0.202 0.798 40 H 0.149 0.851 41 H 0.234 0.766 42 H -0.227 1.227 43 H -0.218 1.218 Dipole moment (debyes) X Y Z Total from point charges 4.604 -3.389 -0.373 5.729 hybrid contribution -0.944 1.019 -0.439 1.457 sum 3.660 -2.369 -0.812 4.435 Atomic orbital electron populations 1.22202 0.76073 1.04561 1.03907 1.43906 1.07032 1.04749 1.52514 1.20203 0.91599 0.87105 1.20872 1.17228 0.85283 0.84399 0.75330 1.90778 1.18199 1.85369 1.52685 1.45149 1.10091 1.04934 1.73548 1.21873 0.99281 0.80152 0.97654 0.89710 1.23629 0.96901 1.01017 0.96675 1.21648 0.97373 0.93158 0.95771 0.86269 1.19964 0.93463 0.95846 0.98841 1.21114 1.00709 0.91266 0.97851 1.21353 0.95014 0.99639 1.01941 1.18131 0.95292 0.80711 1.01386 1.91470 1.93229 1.41945 1.86878 1.21405 1.00089 0.93380 1.02954 1.21242 0.96680 0.96146 0.96372 1.23383 0.97635 0.98992 0.96172 1.21741 0.94265 0.95832 1.03119 1.21023 0.95347 0.95638 1.10475 1.21495 0.91630 0.89209 1.08822 1.25256 0.93483 0.94257 1.04552 1.86569 1.30605 1.88669 1.29780 0.93342 0.82761 0.73238 0.78714 0.90578 0.88733 0.89989 0.74372 0.88370 0.91389 0.83422 0.84158 0.83830 0.82523 0.89026 0.87970 0.80476 0.79829 0.85062 0.76637 1.22651 1.21845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 9.27 127.77 1.18 1.48 16 2 N -0.41 -1.65 3.16 -519.71 -1.64 -3.30 16 3 C -0.08 -0.28 6.88 40.35 0.28 0.00 16 4 C 0.59 3.05 7.77 86.45 0.67 3.72 16 5 O -0.59 -7.59 14.24 -4.32 -0.06 -7.65 16 6 N -0.69 1.76 5.25 -444.01 -2.33 -0.57 16 7 C 0.12 -0.33 4.33 45.51 0.20 -0.13 16 8 H 0.08 0.18 7.45 -2.38 -0.02 0.16 16 9 C -0.14 0.61 7.27 31.21 0.23 0.84 16 10 C -0.06 0.45 3.87 -10.92 -0.04 0.41 16 11 H 0.12 -1.27 8.09 -2.39 -0.02 -1.29 16 12 C -0.08 0.31 5.29 -19.86 -0.11 0.21 16 13 C -0.09 0.21 8.60 22.26 0.19 0.40 16 14 C -0.16 -0.18 10.03 22.31 0.22 0.04 16 15 C 0.06 0.26 7.30 22.37 0.16 0.42 16 16 F -0.16 -1.23 17.27 44.97 0.78 -0.45 16 17 C -0.16 -0.05 10.03 22.31 0.22 0.17 16 18 C -0.09 0.30 9.71 22.26 0.22 0.52 16 19 C -0.12 0.91 7.28 31.12 0.23 1.14 16 20 C -0.12 0.34 10.35 22.57 0.23 0.58 16 21 C -0.20 0.69 9.37 22.01 0.21 0.90 16 22 C 0.01 0.00 6.14 41.34 0.25 0.25 16 23 C -0.07 0.16 2.90 71.24 0.21 0.37 16 24 O -0.55 -0.27 10.50 -148.98 -1.56 -1.83 16 25 Si 0.82 -3.85 31.10 68.60 2.13 -1.72 16 26 H 0.08 0.21 8.14 -2.39 -0.02 0.20 16 27 H 0.09 0.24 7.10 -2.39 -0.02 0.22 16 28 H 0.08 0.64 6.19 -2.39 -0.01 0.63 16 29 H 0.42 -3.68 7.61 -92.70 -0.71 -4.39 16 30 H 0.10 -0.45 6.33 -2.39 -0.02 -0.47 16 31 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.15 -0.87 6.67 -2.91 -0.02 -0.89 16 33 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 34 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 35 H 0.16 -1.38 8.05 -2.91 -0.02 -1.41 16 36 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.10 -0.74 7.72 -2.38 -0.02 -0.76 16 38 H 0.18 -1.80 7.45 -2.91 -0.02 -1.82 16 39 H 0.18 -1.92 6.85 -2.91 -0.02 -1.94 16 40 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 41 H 0.38 -1.37 8.70 -74.06 -0.64 -2.01 16 42 H -0.30 -0.78 7.11 99.48 0.71 -0.07 16 43 H -0.29 -0.30 7.11 99.48 0.71 0.40 16 Total: 0.00 -21.34 358.85 1.62 -19.72 By element: Atomic # 1 Polarization: -15.26 SS G_CDS: -0.25 Total: -15.51 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 4.56 Total: 11.31 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -3.97 Total: -3.87 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -1.63 Total: -9.49 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.78 Total: -0.45 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.13 Total: -1.72 kcal Total: -21.34 1.62 -19.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466350_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.337 kcal (2) G-P(sol) polarization free energy of solvation -21.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds