Wall clock time and date at job start Sat Mar 6 2021 16:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.46988 * 2 1 4 4 C 1.50699 * 109.46961 * 119.99726 * 2 1 3 5 5 C 1.34715 * 125.66255 * 65.00474 * 4 2 1 6 6 C 1.40962 * 107.02840 * 180.27741 * 5 4 2 7 7 C 1.35942 * 106.74352 * 359.60560 * 6 5 4 8 8 C 1.47813 * 125.93090 * 180.16317 * 7 6 5 9 9 C 1.39175 * 119.99931 * 180.02562 * 8 7 6 10 10 C 1.39468 * 119.75943 * 179.75004 * 9 8 7 11 11 C 1.47561 * 120.12195 * 180.27575 * 10 9 8 12 12 O 1.21588 * 119.99666 * 180.25409 * 11 10 9 13 13 N 1.34780 * 120.00234 * 0.24978 * 11 10 9 14 14 C 1.46492 * 119.99971 * 180.02562 * 13 11 10 15 15 H 1.08995 * 112.85452 * 23.80060 * 14 13 11 16 16 C 1.53781 * 113.61630 * 154.99958 * 14 13 11 17 17 C 1.53780 * 87.08108 * 89.11457 * 16 14 13 18 18 H 1.09007 * 113.61535 * 270.80318 * 17 16 14 19 19 C 1.50701 * 113.61376 * 139.98405 * 17 16 14 20 20 C 1.38240 * 119.97630 * 299.72418 * 19 17 16 21 21 C 1.38194 * 120.02755 * 179.72781 * 20 19 17 22 22 C 1.38460 * 119.97609 * 0.52509 * 21 20 19 23 23 F 1.35091 * 120.02962 * 179.72696 * 22 21 20 24 24 C 1.38470 * 119.94374 * 359.75135 * 22 21 20 25 25 C 1.38196 * 119.97218 * 359.97438 * 24 22 21 26 26 C 1.53776 * 87.08125 * 25.43384 * 17 16 14 27 27 C 1.40213 * 119.75535 * 0.52094 * 10 9 8 28 28 O 1.35644 * 120.00253 * 179.76638 * 27 10 9 29 29 C 1.38824 * 119.99426 * 359.75359 * 27 10 9 30 30 C 1.37769 * 120.24123 * 359.97315 * 29 27 10 31 31 O 1.34335 * 125.66757 * 245.04484 * 4 2 1 32 32 H 0.96700 * 114.00156 * 300.00401 * 1 2 3 33 33 H 1.08996 * 109.47167 * 239.99839 * 2 1 3 34 34 H 1.48494 * 110.00192 * 299.99569 * 3 2 1 35 35 H 1.48497 * 110.00190 * 61.31890 * 3 2 1 36 36 H 1.08002 * 126.48277 * 0.02562 * 5 4 2 37 37 H 1.08002 * 126.62963 * 179.76094 * 6 5 4 38 38 H 1.08001 * 120.12176 * 0.02601 * 9 8 7 39 39 H 0.97002 * 119.99805 * 359.97438 * 13 11 10 40 40 H 1.09000 * 113.61824 * 203.66479 * 16 14 13 41 41 H 1.08999 * 113.61355 * 334.56547 * 16 14 13 42 42 H 1.08004 * 119.98410 * 359.97438 * 20 19 17 43 43 H 1.07999 * 120.01272 * 180.29677 * 21 20 19 44 44 H 1.07995 * 120.00958 * 179.97438 * 24 22 21 45 45 H 1.08007 * 119.98339 * 180.02562 * 25 24 22 46 46 H 1.09005 * 113.61625 * 220.01870 * 26 17 16 47 47 H 1.08999 * 113.61236 * 89.12118 * 26 17 16 48 48 H 0.96693 * 114.00807 * 269.98295 * 28 27 10 49 49 H 1.07997 * 119.87625 * 179.97438 * 29 27 10 50 50 H 1.08001 * 119.87081 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7571 -2.0168 1.5093 6 6 2.3761 -2.2597 2.7522 7 6 2.9070 -1.0776 3.1631 8 6 3.6569 -0.8526 4.4168 9 6 4.1476 0.4148 4.7163 10 6 4.8500 0.6226 5.9031 11 6 5.3685 1.9646 6.2315 12 8 5.9846 2.1421 7.2646 13 7 5.1594 2.9933 5.3862 14 6 5.6747 4.3254 5.7120 15 1 6.5212 4.2957 6.3979 16 6 5.9120 5.2127 4.4787 17 6 4.4551 5.6803 4.6323 18 1 3.7384 5.0604 4.0936 19 6 4.2637 7.1530 4.3765 20 6 4.9262 8.0816 5.1574 21 6 4.7558 9.4323 4.9201 22 6 3.9126 9.8557 3.9068 23 9 3.7409 11.1759 3.6775 24 6 3.2450 8.9247 3.1290 25 6 3.4214 7.5745 3.3645 26 6 4.5811 5.3253 6.1233 27 6 5.0661 -0.4494 6.7807 28 8 5.7526 -0.2539 7.9341 29 6 4.5770 -1.7107 6.4691 30 6 3.8783 -1.9145 5.2994 31 8 2.6265 -0.1459 2.2318 32 1 -0.3933 0.4417 0.7650 33 1 1.7923 -0.5138 -0.8899 34 1 1.5616 2.4679 -1.2085 35 1 1.5879 2.4586 1.2242 36 1 1.2375 -2.7400 0.8983 37 1 2.4222 -3.2033 3.2757 38 1 3.9812 1.2355 4.0342 39 1 4.6683 2.8515 4.5618 40 1 6.6441 6.0032 4.6438 41 1 6.0955 4.6490 3.5640 42 1 5.5805 7.7512 5.9507 43 1 5.2773 10.1575 5.5272 44 1 2.5867 9.2538 2.3386 45 1 2.9011 6.8482 2.7576 46 1 3.6901 4.8524 6.5363 47 1 4.9492 6.1466 6.7381 48 1 6.7068 -0.3870 7.8513 49 1 4.7449 -2.5351 7.1462 50 1 3.5002 -2.8982 5.0631 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466350_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:08:25 Heat of formation + Delta-G solvation = -44.867433 kcal Electronic energy + Delta-G solvation = -37570.616236 eV Core-core repulsion = 32412.076864 eV Total energy + Delta-G solvation = -5158.539372 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.141 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.93489 -43.68242 -41.83641 -40.97996 -39.71095 -38.52837 -38.17366 -37.80198 -34.74758 -34.13177 -32.76515 -32.42440 -32.13804 -31.11912 -30.02472 -26.69758 -26.39732 -26.34546 -25.12747 -24.09903 -23.57522 -23.00852 -22.55333 -21.87786 -21.20761 -20.28402 -19.54951 -19.17281 -18.76852 -18.37545 -17.76029 -17.47391 -17.37756 -17.10158 -16.93656 -16.63936 -16.58982 -16.37928 -16.22555 -15.91112 -15.77911 -15.51093 -15.39337 -15.15923 -14.54355 -14.49875 -14.41736 -14.34141 -14.18928 -13.95188 -13.93378 -13.77048 -13.66770 -13.54938 -13.39452 -13.21444 -13.10529 -12.92353 -12.85918 -12.21553 -12.11265 -11.89518 -11.84253 -11.67544 -11.23163 -11.05227 -10.91773 -10.77112 -10.46953 -10.30574 -10.10321 -10.03412 -9.49785 -8.89206 -4.94110 -0.54710 -0.19597 0.10558 0.25184 0.78472 1.17739 1.49142 1.50199 1.72593 1.87356 1.94516 2.00014 2.54024 2.64098 3.12704 3.22955 3.28435 3.31780 3.44334 3.50850 3.64345 3.66324 3.72231 3.81409 3.91346 3.94377 3.96572 4.03254 4.07661 4.18553 4.22844 4.30648 4.36775 4.40335 4.46662 4.62388 4.66078 4.69115 4.78147 4.80575 4.85844 4.88523 4.90692 5.01123 5.02068 5.04193 5.04406 5.12780 5.16262 5.17979 5.22422 5.26876 5.45667 5.49197 5.52303 5.64318 5.90691 5.99614 6.35861 6.42673 6.74578 7.13264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.041 4.041 3 Si 0.771 3.229 4 C -0.053 4.053 5 C -0.183 4.183 6 C -0.191 4.191 7 C 0.025 3.975 8 C -0.041 4.041 9 C -0.050 4.050 10 C -0.179 4.179 11 C 0.560 3.440 12 O -0.557 6.557 13 N -0.699 5.699 14 C 0.116 3.884 15 H 0.091 0.909 16 C -0.123 4.123 17 C -0.066 4.066 18 H 0.112 0.888 19 C -0.080 4.080 20 C -0.090 4.090 21 C -0.158 4.158 22 C 0.065 3.935 23 F -0.156 7.156 24 C -0.160 4.160 25 C -0.090 4.090 26 C -0.145 4.145 27 C 0.164 3.836 28 O -0.495 6.495 29 C -0.148 4.148 30 C -0.045 4.045 31 O -0.171 6.171 32 H 0.389 0.611 33 H 0.151 0.849 34 H -0.287 1.287 35 H -0.281 1.281 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.151 0.849 39 H 0.411 0.589 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.152 0.848 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.411 0.589 49 H 0.163 0.837 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -5.096 -3.904 6.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.150 4.150 3 Si 0.674 3.326 4 C -0.102 4.102 5 C -0.202 4.202 6 C -0.210 4.210 7 C -0.025 4.025 8 C -0.042 4.042 9 C -0.068 4.068 10 C -0.183 4.183 11 C 0.348 3.652 12 O -0.436 6.436 13 N -0.351 5.351 14 C 0.010 3.990 15 H 0.109 0.891 16 C -0.161 4.161 17 C -0.085 4.085 18 H 0.130 0.870 19 C -0.080 4.080 20 C -0.108 4.108 21 C -0.177 4.177 22 C 0.046 3.954 23 F -0.134 7.134 24 C -0.178 4.178 25 C -0.108 4.108 26 C -0.184 4.184 27 C 0.118 3.882 28 O -0.309 6.309 29 C -0.166 4.166 30 C -0.063 4.063 31 O -0.069 6.069 32 H 0.239 0.761 33 H 0.168 0.832 34 H -0.214 1.214 35 H -0.206 1.206 36 H 0.178 0.822 37 H 0.191 0.809 38 H 0.168 0.832 39 H 0.249 0.751 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.168 0.832 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.170 0.830 46 H 0.082 0.918 47 H 0.119 0.881 48 H 0.272 0.728 49 H 0.180 0.820 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.711 -3.950 -3.477 5.533 hybrid contribution -1.133 0.101 0.099 1.142 sum 0.578 -3.848 -3.378 5.153 Atomic orbital electron populations 1.86645 1.17435 1.80472 1.50007 1.24581 0.83475 1.12853 0.94075 0.93710 0.90163 0.71353 0.77378 1.23029 1.01050 0.93941 0.92227 1.21799 1.04037 0.96031 0.98300 1.22153 1.02212 0.99156 0.97455 1.20417 1.03492 0.87729 0.90841 1.17687 1.00403 0.94517 0.91560 1.21409 0.93733 0.97230 0.94468 1.20244 1.06650 0.94163 0.97212 1.18232 0.79141 0.84617 0.83181 1.90813 1.41956 1.84855 1.25994 1.45514 1.57401 1.07998 1.24206 1.21874 0.97236 0.80960 0.98911 0.89127 1.23399 0.95973 0.98801 0.97915 1.21611 0.98592 0.91202 0.97060 0.87009 1.19941 0.96734 0.95749 0.95603 1.21121 0.99104 0.91074 0.99463 1.21366 0.99964 0.98072 0.98295 1.18116 1.00838 0.77406 0.99066 1.91470 1.94502 1.33238 1.94236 1.21380 1.01727 0.93561 1.01168 1.21200 0.97512 0.94673 0.97378 1.23595 0.99353 0.99224 0.96219 1.18894 0.93517 0.91473 0.84362 1.84703 1.25119 1.92425 1.28649 1.21572 1.00455 0.96512 0.98037 1.21413 0.94226 0.99281 0.91402 1.83898 1.58132 1.38187 1.26673 0.76066 0.83156 1.21386 1.20645 0.82193 0.80943 0.83174 0.75068 0.87657 0.88910 0.83177 0.83930 0.83968 0.83049 0.91764 0.88117 0.72831 0.81973 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.52 12.88 -148.98 -1.92 -1.40 16 2 C -0.04 0.16 2.98 71.24 0.21 0.37 16 3 Si 0.77 -3.78 32.11 68.60 2.20 -1.57 16 4 C -0.05 0.09 6.20 24.88 0.15 0.24 16 5 C -0.18 0.25 10.78 22.13 0.24 0.48 16 6 C -0.19 0.47 10.26 22.40 0.23 0.69 16 7 C 0.02 -0.03 7.03 24.27 0.17 0.14 16 8 C -0.04 0.10 5.87 -20.13 -0.12 -0.02 16 9 C -0.05 0.12 9.20 22.79 0.21 0.33 16 10 C -0.18 -0.28 5.88 -20.04 -0.12 -0.40 16 11 C 0.56 2.48 7.76 86.70 0.67 3.16 16 12 O -0.56 -6.78 14.74 17.00 0.25 -6.53 16 13 N -0.70 1.52 5.21 -443.19 -2.31 -0.79 16 14 C 0.12 -0.31 4.32 45.52 0.20 -0.11 16 15 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 16 C -0.12 0.88 7.29 31.12 0.23 1.11 16 17 C -0.07 0.41 3.86 -11.02 -0.04 0.37 16 18 H 0.11 -0.95 8.09 -2.38 -0.02 -0.97 16 19 C -0.08 0.24 5.29 -19.86 -0.11 0.13 16 20 C -0.09 0.18 8.62 22.26 0.19 0.37 16 21 C -0.16 -0.21 10.03 22.31 0.22 0.02 16 22 C 0.06 0.29 7.30 22.38 0.16 0.45 16 23 F -0.16 -1.27 17.27 44.97 0.78 -0.49 16 24 C -0.16 -0.19 10.03 22.31 0.22 0.03 16 25 C -0.09 0.20 9.71 22.26 0.22 0.42 16 26 C -0.15 0.48 7.25 31.12 0.23 0.70 16 27 C 0.16 0.30 6.72 22.89 0.15 0.45 16 28 O -0.50 -2.09 11.55 -68.59 -0.79 -2.88 16 29 C -0.15 0.46 9.96 22.30 0.22 0.69 16 30 C -0.05 0.22 9.54 22.55 0.22 0.43 16 31 O -0.17 0.18 8.80 -6.51 -0.06 0.12 16 32 H 0.39 -2.37 8.70 -74.06 -0.64 -3.01 16 33 H 0.15 -1.05 7.96 -2.39 -0.02 -1.07 16 34 H -0.29 -0.44 7.11 99.48 0.71 0.27 16 35 H -0.28 0.17 7.11 99.48 0.71 0.88 16 36 H 0.16 -0.51 8.06 -2.91 -0.02 -0.53 16 37 H 0.17 -1.24 7.25 -2.91 -0.02 -1.26 16 38 H 0.15 -1.00 6.24 -2.91 -0.02 -1.01 16 39 H 0.41 -3.06 6.73 -92.71 -0.62 -3.68 16 40 H 0.11 -0.80 7.73 -2.39 -0.02 -0.81 16 41 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.15 -0.88 6.64 -2.91 -0.02 -0.90 16 43 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 44 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 45 H 0.15 -1.04 8.05 -2.91 -0.02 -1.06 16 46 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 47 H 0.10 -0.41 6.29 -2.39 -0.02 -0.43 16 48 H 0.41 -1.25 9.06 -74.06 -0.67 -1.92 16 49 H 0.16 -1.13 8.06 -2.91 -0.02 -1.16 16 50 H 0.16 -1.64 6.96 -2.91 -0.02 -1.66 16 Total: 0.00 -24.08 428.33 1.07 -23.01 By element: Atomic # 1 Polarization: -18.66 SS G_CDS: -0.85 Total: -19.51 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 3.76 Total: 10.05 kcal Atomic # 7 Polarization: 1.52 SS G_CDS: -2.31 Total: -0.79 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -2.52 Total: -10.69 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.78 Total: -0.49 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.20 Total: -1.57 kcal Total: -24.08 1.07 -23.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466350_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.858 kcal (2) G-P(sol) polarization free energy of solvation -24.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds