Wall clock time and date at job start Sat Mar 6 2021 16:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.38053 * 119.80778 * 299.72925 * 4 2 1 6 6 C 1.38715 * 120.08405 * 179.72620 * 5 4 2 7 7 O 1.35654 * 120.14513 * 180.25606 * 6 5 4 8 8 C 1.40136 * 119.69985 * 0.54234 * 6 5 4 9 9 C 1.47534 * 120.19003 * 179.75204 * 8 6 5 10 10 O 1.21593 * 120.00039 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00099 * 179.97438 * 9 8 6 12 12 C 1.46495 * 120.00165 * 180.02562 * 11 9 8 13 13 H 1.09003 * 112.84784 * 23.80250 * 12 11 9 14 14 C 1.53772 * 113.61671 * 154.99915 * 12 11 9 15 15 C 1.53782 * 87.08127 * 89.11412 * 14 12 11 16 16 H 1.08998 * 113.61355 * 270.88307 * 15 14 12 17 17 C 1.50706 * 113.61310 * 139.98615 * 15 14 12 18 18 C 1.38248 * 119.96968 * 299.72481 * 17 15 14 19 19 C 1.38192 * 120.02240 * 179.73292 * 18 17 15 20 20 C 1.38469 * 119.97327 * 0.56540 * 19 18 17 21 21 F 1.35099 * 120.02222 * 179.69001 * 20 19 18 22 22 C 1.38455 * 119.94773 * 359.70703 * 20 19 18 23 23 C 1.38198 * 119.97459 * 359.97438 * 22 20 19 24 24 C 1.53773 * 87.08194 * 25.43535 * 15 14 12 25 25 C 1.39704 * 119.61816 * 359.73242 * 8 6 5 26 26 C 1.37793 * 119.90699 * 359.97438 * 25 8 6 27 27 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 28 28 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 29 29 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 30 30 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 31 31 H 1.08000 * 119.95357 * 359.97438 * 5 4 2 32 32 H 0.96700 * 113.99918 * 270.28484 * 7 6 5 33 33 H 0.96998 * 119.99635 * 359.97438 * 11 9 8 34 34 H 1.08999 * 113.62093 * 203.66289 * 14 12 11 35 35 H 1.09007 * 113.61731 * 334.56785 * 14 12 11 36 36 H 1.07994 * 119.98490 * 359.97438 * 18 17 15 37 37 H 1.08000 * 120.01458 * 180.25503 * 19 18 17 38 38 H 1.08004 * 120.01170 * 179.97438 * 22 20 19 39 39 H 1.07996 * 119.98710 * 179.97438 * 23 22 20 40 40 H 1.09002 * 113.61734 * 220.02024 * 24 15 14 41 41 H 1.08996 * 113.61554 * 89.11408 * 24 15 14 42 42 H 1.08002 * 120.04845 * 179.97438 * 25 8 6 43 43 H 1.08000 * 119.84578 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6000 -2.0338 -1.4420 6 6 2.0546 -2.6917 -2.5755 7 8 1.7255 -3.9906 -2.7873 8 6 2.8602 -2.0103 -3.4977 9 6 3.3542 -2.7011 -4.7040 10 8 3.0628 -3.8652 -4.9002 11 7 4.1284 -2.0419 -5.5887 12 6 4.6184 -2.7276 -6.7869 13 1 3.9968 -3.5761 -7.0730 14 6 4.9385 -1.7776 -7.9529 15 6 6.3575 -1.6677 -7.3706 16 1 6.4683 -0.8676 -6.6387 17 6 7.4409 -1.6585 -8.4181 18 6 7.5850 -2.7362 -9.2721 19 6 8.5745 -2.7266 -10.2366 20 6 9.4293 -1.6421 -10.3400 21 9 10.4010 -1.6345 -11.2785 22 6 9.2876 -0.5659 -9.4805 23 6 8.2931 -0.5749 -8.5210 24 6 6.1213 -3.0504 -6.7407 25 6 3.1926 -0.6729 -3.2682 26 6 2.7273 -0.0331 -2.1400 27 1 -0.3934 0.4417 -0.7651 28 1 1.7923 -0.5139 0.8900 29 1 1.5879 2.4585 -1.2243 30 1 1.5615 2.4679 1.2085 31 1 0.9828 -2.5563 -0.7262 32 1 2.3514 -4.6220 -2.4069 33 1 4.3604 -1.1131 -5.4324 34 1 4.9037 -2.2587 -8.9304 35 1 4.3794 -0.8424 -7.9203 36 1 6.9215 -3.5841 -9.1878 37 1 8.6843 -3.5667 -10.9063 38 1 9.9540 0.2803 -9.5600 39 1 8.1826 0.2642 -7.8502 40 1 6.5171 -3.1429 -5.7293 41 1 6.4098 -3.8796 -7.3866 42 1 3.8134 -0.1411 -3.9741 43 1 2.9845 1.0009 -1.9638 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466350_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:08:59 Heat of formation + Delta-G solvation = -67.191796 kcal Electronic energy + Delta-G solvation = -28459.342340 eV Core-core repulsion = 24158.733144 eV Total energy + Delta-G solvation = -4300.609196 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.90389 -41.85472 -41.05351 -39.85702 -38.73978 -38.25861 -37.22413 -34.65738 -32.71962 -32.10046 -31.16914 -31.09169 -27.64145 -26.66406 -25.90965 -24.14934 -23.87696 -23.57968 -22.54505 -21.73916 -20.23986 -19.39453 -18.86776 -18.61894 -18.28186 -17.44081 -17.27629 -16.93587 -16.61235 -16.55938 -16.28566 -16.17682 -16.09131 -15.82104 -15.43114 -15.31148 -15.01287 -14.73957 -14.44921 -14.36286 -14.16421 -13.91085 -13.73526 -13.62581 -13.42728 -13.26608 -12.89218 -12.84711 -12.37395 -12.19174 -12.12837 -11.82504 -11.63818 -11.60722 -11.19791 -10.96375 -10.65301 -10.21033 -10.05264 -9.97470 -9.76196 -9.46008 -4.89314 -0.40078 0.14281 0.16813 0.29227 1.29442 1.63937 1.71861 2.01212 2.03255 2.56848 2.59104 3.14217 3.32247 3.38472 3.47872 3.51026 3.68096 3.70385 3.74467 3.80289 3.85281 3.97995 4.00507 4.10357 4.23690 4.29496 4.34923 4.43997 4.46211 4.62814 4.67979 4.77765 4.80802 4.87436 4.92963 5.04429 5.04903 5.07375 5.07928 5.14640 5.19215 5.21906 5.26007 5.30963 5.52573 5.61825 5.68513 5.94807 6.45387 6.49565 6.72662 7.19106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.095 4.095 3 Si 0.783 3.217 4 C -0.071 4.071 5 C -0.141 4.141 6 C 0.151 3.849 7 O -0.499 6.499 8 C -0.179 4.179 9 C 0.558 3.442 10 O -0.564 6.564 11 N -0.694 5.694 12 C 0.114 3.886 13 H 0.082 0.918 14 C -0.127 4.127 15 C -0.061 4.061 16 H 0.122 0.878 17 C -0.081 4.081 18 C -0.092 4.092 19 C -0.161 4.161 20 C 0.063 3.937 21 F -0.157 7.157 22 C -0.160 4.160 23 C -0.086 4.086 24 C -0.143 4.143 25 C -0.052 4.052 26 C -0.131 4.131 27 H 0.388 0.612 28 H 0.128 0.872 29 H -0.273 1.273 30 H -0.309 1.309 31 H 0.132 0.868 32 H 0.407 0.593 33 H 0.416 0.584 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.171 0.829 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 6.010 2.030 7.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.203 4.203 3 Si 0.687 3.313 4 C -0.071 4.071 5 C -0.160 4.160 6 C 0.105 3.895 7 O -0.313 6.313 8 C -0.183 4.183 9 C 0.346 3.654 10 O -0.444 6.444 11 N -0.347 5.347 12 C 0.008 3.992 13 H 0.100 0.900 14 C -0.164 4.164 15 C -0.079 4.079 16 H 0.140 0.860 17 C -0.081 4.081 18 C -0.110 4.110 19 C -0.180 4.180 20 C 0.044 3.956 21 F -0.136 7.136 22 C -0.178 4.178 23 C -0.104 4.104 24 C -0.181 4.181 25 C -0.070 4.070 26 C -0.148 4.148 27 H 0.237 0.763 28 H 0.146 0.854 29 H -0.199 1.199 30 H -0.238 1.238 31 H 0.150 0.850 32 H 0.267 0.733 33 H 0.254 0.746 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.189 0.811 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.918 5.905 2.078 6.907 hybrid contribution -0.504 -0.567 -0.512 0.915 sum 2.414 5.338 1.567 6.064 Atomic orbital electron populations 1.86598 1.18482 1.80491 1.50223 1.25505 0.83572 1.12781 0.98433 0.94029 0.89794 0.70790 0.76668 1.20503 0.96406 0.93487 0.96742 1.21336 1.02002 0.95628 0.97005 1.18774 0.92919 0.85675 0.92128 1.84722 1.52639 1.13481 1.80411 1.20435 1.03683 0.96875 0.97298 1.18313 0.77900 0.85957 0.83204 1.90817 1.58629 1.18140 1.76767 1.45429 1.51122 1.16016 1.22122 1.21857 0.95281 0.96624 0.85423 0.89998 1.23401 0.95013 1.00407 0.97624 1.21612 0.91766 0.98921 0.95624 0.85999 1.19969 0.97070 0.93978 0.97086 1.21118 0.97079 0.99135 0.93656 1.21353 0.96766 0.98367 1.01524 1.18142 0.89381 0.97676 0.90372 1.91470 1.61424 1.96936 1.63729 1.21410 1.01393 0.98351 0.96694 1.21244 0.93006 0.98905 0.97209 1.23567 0.95019 0.97551 1.01977 1.21510 0.96861 0.91325 0.97291 1.21248 0.98431 1.01231 0.93902 0.76307 0.85414 1.19896 1.23758 0.84977 0.73298 0.74570 0.88259 0.89097 0.83503 0.84248 0.83830 0.82379 0.91015 0.88587 0.81144 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.33 12.77 -148.98 -1.90 -2.23 16 2 C -0.10 0.38 2.81 71.24 0.20 0.58 16 3 Si 0.78 -5.18 29.77 68.60 2.04 -3.13 16 4 C -0.07 0.24 5.39 -19.83 -0.11 0.14 16 5 C -0.14 -0.15 9.53 22.34 0.21 0.07 16 6 C 0.15 0.58 6.72 22.84 0.15 0.73 16 7 O -0.50 -3.58 11.58 -68.78 -0.80 -4.38 16 8 C -0.18 -0.09 5.89 -20.01 -0.12 -0.20 16 9 C 0.56 1.98 7.76 86.69 0.67 2.65 16 10 O -0.56 -7.18 14.76 16.91 0.25 -6.93 16 11 N -0.69 3.04 5.21 -443.20 -2.31 0.73 16 12 C 0.11 -0.42 4.32 45.52 0.20 -0.22 16 13 H 0.08 0.16 7.46 -2.39 -0.02 0.15 16 14 C -0.13 1.01 7.29 31.12 0.23 1.24 16 15 C -0.06 0.53 3.86 -11.01 -0.04 0.49 16 16 H 0.12 -1.55 8.09 -2.39 -0.02 -1.57 16 17 C -0.08 0.38 5.29 -19.86 -0.11 0.28 16 18 C -0.09 0.26 8.62 22.26 0.19 0.45 16 19 C -0.16 -0.12 10.03 22.31 0.22 0.10 16 20 C 0.06 0.22 7.30 22.38 0.16 0.39 16 21 F -0.16 -1.18 17.27 44.97 0.78 -0.40 16 22 C -0.16 0.07 10.03 22.31 0.22 0.29 16 23 C -0.09 0.39 9.71 22.26 0.22 0.60 16 24 C -0.14 0.78 7.25 31.12 0.23 1.01 16 25 C -0.05 0.37 9.54 22.52 0.21 0.59 16 26 C -0.13 0.99 8.64 22.24 0.19 1.18 16 27 H 0.39 -1.96 8.70 -74.06 -0.64 -2.60 16 28 H 0.13 -0.67 7.96 -2.38 -0.02 -0.69 16 29 H -0.27 1.09 7.11 99.48 0.71 1.79 16 30 H -0.31 -0.79 7.11 99.48 0.71 -0.08 16 31 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 32 H 0.41 0.04 9.06 -74.06 -0.67 -0.64 16 33 H 0.42 -4.81 6.73 -92.71 -0.62 -5.44 16 34 H 0.10 -0.73 7.73 -2.39 -0.02 -0.75 16 35 H 0.09 -0.90 8.14 -2.38 -0.02 -0.92 16 36 H 0.15 -0.90 6.64 -2.91 -0.02 -0.92 16 37 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 38 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 39 H 0.16 -1.61 8.05 -2.91 -0.02 -1.63 16 40 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.10 -0.51 6.29 -2.39 -0.02 -0.53 16 42 H 0.17 -2.63 6.40 -2.91 -0.02 -2.65 16 43 H 0.16 -2.15 4.85 -2.91 -0.01 -2.16 16 Total: 0.00 -25.55 363.98 0.20 -25.35 By element: Atomic # 1 Polarization: -18.55 SS G_CDS: -0.80 Total: -19.35 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 2.94 Total: 10.35 kcal Atomic # 7 Polarization: 3.04 SS G_CDS: -2.31 Total: 0.73 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -2.45 Total: -13.54 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.78 Total: -0.40 kcal Atomic # 14 Polarization: -5.18 SS G_CDS: 2.04 Total: -3.13 kcal Total: -25.55 0.20 -25.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466350_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.840 kcal (2) G-P(sol) polarization free energy of solvation -25.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds