Wall clock time and date at job start Sat Mar 6 2021 16:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.46782 * 2 1 4 4 C 1.50704 * 109.46940 * 240.00701 * 2 1 3 5 5 C 1.38241 * 119.97460 * 120.01609 * 4 2 1 6 6 C 1.38285 * 120.11238 * 179.97438 * 5 4 2 7 7 C 1.38122 * 120.05532 * 359.67966 * 6 5 4 8 8 C 1.38755 * 119.94014 * 0.59774 * 7 6 5 9 9 O 1.35905 * 120.05256 * 179.69555 * 8 7 6 10 10 C 1.42897 * 117.00209 * 359.72888 * 9 8 7 11 11 C 1.53000 * 109.47185 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47135 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47283 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99733 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99797 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99418 * 180.02562 * 15 13 12 17 17 H 1.09000 * 112.85288 * 23.80409 * 16 15 13 18 18 C 1.53783 * 113.61007 * 154.99668 * 16 15 13 19 19 C 1.53786 * 87.08050 * 89.11544 * 18 16 15 20 20 H 1.09002 * 113.61357 * 270.88070 * 19 18 16 21 21 C 1.50697 * 113.61519 * 140.06465 * 19 18 16 22 22 C 1.38246 * 119.97437 * 301.25080 * 21 19 18 23 23 C 1.38200 * 120.02774 * 179.77228 * 22 21 19 24 24 C 1.38453 * 119.97215 * 0.50366 * 23 22 21 25 25 F 1.35100 * 120.02602 * 179.77164 * 24 23 22 26 26 C 1.38462 * 119.95015 * 359.74961 * 24 23 22 27 27 C 1.38197 * 119.97164 * 359.97438 * 26 24 23 28 28 C 1.53781 * 87.17350 * 25.47154 * 19 18 16 29 29 C 1.38166 * 119.96792 * 299.99551 * 4 2 1 30 30 H 0.96698 * 114.00202 * 59.99707 * 1 2 3 31 31 H 1.08997 * 109.47456 * 120.00184 * 2 1 3 32 32 H 1.48496 * 110.00245 * 298.68572 * 3 2 1 33 33 H 1.48504 * 109.99990 * 60.00506 * 3 2 1 34 34 H 1.08005 * 119.94472 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.97118 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.03157 * 180.32126 * 7 6 5 37 37 H 1.09000 * 109.46978 * 59.99813 * 10 9 8 38 38 H 1.09001 * 109.46936 * 299.99681 * 10 9 8 39 39 H 1.09000 * 109.46988 * 60.00220 * 11 10 9 40 40 H 1.09001 * 109.47251 * 299.99890 * 11 10 9 41 41 H 1.08994 * 109.47311 * 59.99911 * 12 11 10 42 42 H 1.09004 * 109.46981 * 300.00592 * 12 11 10 43 43 H 0.96995 * 120.00261 * 359.97438 * 15 13 12 44 44 H 1.08992 * 113.61796 * 334.56401 * 18 16 15 45 45 H 1.09005 * 113.68996 * 203.67012 * 18 16 15 46 46 H 1.08000 * 119.98631 * 0.02562 * 22 21 19 47 47 H 1.07998 * 120.01469 * 180.25720 * 23 22 21 48 48 H 1.08000 * 120.01171 * 180.02562 * 26 24 23 49 49 H 1.08000 * 119.98795 * 180.02562 * 27 26 24 50 50 H 1.08999 * 113.61567 * 89.07405 * 28 19 18 51 51 H 1.08998 * 113.61196 * 219.97759 * 28 19 18 52 52 H 1.07999 * 120.02988 * 0.04218 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7263 -0.0379 -2.1400 6 6 3.1892 -0.6871 -3.2699 7 6 2.8636 -2.0113 -3.4891 8 6 2.0610 -2.6867 -2.5808 9 8 1.7341 -3.9879 -2.7974 10 6 2.2468 -4.5967 -3.9842 11 6 1.7771 -6.0512 -4.0551 12 6 2.3255 -6.7028 -5.3261 13 6 1.8624 -8.1352 -5.3962 14 8 1.1631 -8.5901 -4.5160 15 7 2.2263 -8.9108 -6.4366 16 6 1.7756 -10.3032 -6.5050 17 1 0.8648 -10.4819 -5.9334 18 6 1.7250 -10.8646 -7.9358 19 6 3.1885 -11.2923 -7.7355 20 1 3.9101 -10.5268 -8.0210 21 6 3.5077 -12.6443 -8.3197 22 6 2.8152 -13.7621 -7.8929 23 6 3.1037 -15.0017 -8.4313 24 6 4.0940 -15.1255 -9.3910 25 9 4.3801 -16.3376 -9.9147 26 6 4.7905 -14.0061 -9.8140 27 6 4.4963 -12.7666 -9.2783 28 6 2.8922 -11.3274 -6.2270 29 6 1.5972 -2.0331 -1.4487 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5138 0.8899 32 1 1.5877 2.4587 -1.2241 33 1 1.5615 2.4679 1.2086 34 1 2.9863 0.9961 -1.9677 35 1 3.8098 -0.1595 -3.9791 36 1 3.2296 -2.5194 -4.3690 37 1 3.3362 -4.5676 -3.9660 38 1 1.8832 -4.0543 -4.8570 39 1 0.6877 -6.0807 -4.0731 40 1 2.1410 -6.5934 -3.1823 41 1 3.4149 -6.6732 -5.3086 42 1 1.9613 -6.1604 -6.1986 43 1 2.7859 -8.5471 -7.1404 44 1 1.5945 -10.0993 -8.7008 45 1 1.0375 -11.7023 -8.0535 46 1 2.0456 -13.6659 -7.1414 47 1 2.5598 -15.8742 -8.1007 48 1 5.5629 -14.1015 -10.5628 49 1 5.0391 -11.8933 -9.6083 50 1 2.5230 -12.2914 -5.8768 51 1 3.7033 -10.9355 -5.6134 52 1 0.9758 -2.5578 -0.7381 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10466350_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:09:50 Heat of formation + Delta-G solvation = -76.078266 kcal Electronic energy + Delta-G solvation = -32642.758092 eV Core-core repulsion = 27875.150692 eV Total energy + Delta-G solvation = -4767.607399 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.173 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -49.92584 -41.58450 -41.24795 -40.34400 -39.22967 -38.66053 -37.41296 -34.89418 -34.45171 -32.45776 -32.12964 -31.49615 -31.09026 -28.40364 -26.86587 -26.68003 -25.87790 -24.16548 -23.73549 -23.52156 -22.54206 -21.88930 -21.44362 -20.15665 -19.22978 -18.77690 -18.24421 -17.90738 -17.46966 -17.39035 -17.19447 -17.00981 -16.78986 -16.65042 -16.62709 -16.37166 -16.14255 -15.53669 -15.44898 -15.39581 -14.90511 -14.72978 -14.63641 -14.46853 -14.21473 -14.12735 -14.10518 -13.94075 -13.72449 -13.46098 -13.27892 -13.19139 -13.07367 -12.88500 -12.72286 -12.31091 -12.27367 -12.19250 -11.93842 -11.85111 -11.65647 -11.58877 -11.54911 -11.22241 -10.95692 -10.67918 -10.10258 -10.03896 -9.90905 -9.48608 -9.23116 -4.90645 0.11582 0.22917 0.26363 0.42511 1.29891 1.61308 1.62380 1.91018 1.99651 2.39041 2.55248 2.69249 3.29663 3.39891 3.48129 3.61608 3.66716 3.67363 3.73032 3.82857 3.86461 3.90008 3.95454 3.98308 3.99896 4.12877 4.21132 4.22768 4.26772 4.32146 4.36591 4.41837 4.43897 4.46438 4.56540 4.63425 4.67701 4.71356 4.78398 4.88712 4.91318 5.00557 5.02056 5.03189 5.04838 5.05326 5.15725 5.17929 5.20748 5.28444 5.30694 5.40279 5.46803 5.53052 5.67839 5.76378 5.92068 6.44742 6.46229 6.55686 7.27541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.093 4.093 3 Si 0.782 3.218 4 C -0.082 4.082 5 C -0.160 4.160 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.340 6.340 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.127 4.127 13 C 0.510 3.490 14 O -0.590 6.590 15 N -0.700 5.700 16 C 0.112 3.888 17 H 0.079 0.921 18 C -0.126 4.126 19 C -0.061 4.061 20 H 0.121 0.879 21 C -0.082 4.082 22 C -0.092 4.092 23 C -0.161 4.161 24 C 0.064 3.936 25 F -0.156 7.156 26 C -0.159 4.159 27 C -0.087 4.087 28 C -0.145 4.145 29 C -0.153 4.153 30 H 0.386 0.614 31 H 0.120 0.880 32 H -0.278 1.278 33 H -0.304 1.304 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.419 0.581 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.158 0.842 50 H 0.093 0.907 51 H 0.069 0.931 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 4.879 -6.909 10.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.200 4.200 3 Si 0.687 3.313 4 C -0.083 4.083 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.223 4.223 8 C 0.071 3.929 9 O -0.254 6.254 10 C -0.017 4.017 11 C -0.141 4.141 12 C -0.166 4.166 13 C 0.299 3.701 14 O -0.470 6.470 15 N -0.352 5.352 16 C 0.006 3.994 17 H 0.097 0.903 18 C -0.164 4.164 19 C -0.079 4.079 20 H 0.139 0.861 21 C -0.082 4.082 22 C -0.110 4.110 23 C -0.180 4.180 24 C 0.045 3.955 25 F -0.135 7.135 26 C -0.178 4.178 27 C -0.104 4.104 28 C -0.183 4.183 29 C -0.172 4.172 30 H 0.235 0.765 31 H 0.138 0.862 32 H -0.204 1.204 33 H -0.233 1.233 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.257 0.743 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.164 0.836 47 H 0.158 0.842 48 H 0.162 0.838 49 H 0.175 0.825 50 H 0.111 0.889 51 H 0.088 0.912 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.896 4.870 -5.669 9.519 hybrid contribution -1.094 -1.033 -0.693 1.657 sum 4.801 3.837 -6.362 8.846 Atomic orbital electron populations 1.86573 1.18666 1.80532 1.50122 1.25439 0.83443 1.12706 0.98462 0.93899 0.90105 0.70895 0.76437 1.20135 0.97859 0.93343 0.96947 1.21187 1.00318 1.00912 0.95335 1.21312 0.97429 0.93505 0.96784 1.21610 1.02583 0.96824 1.01316 1.19201 0.95218 0.83575 0.94924 1.86055 1.71692 1.22881 1.44821 1.23001 0.99751 0.93104 0.85803 1.21159 1.01515 0.93009 0.98396 1.21535 1.04728 0.90475 0.99866 1.21205 0.78910 0.89184 0.80834 1.90742 1.39833 1.76222 1.40171 1.45572 1.53332 1.11116 1.25191 1.21872 0.97756 0.81246 0.98512 0.90255 1.23376 0.95964 1.01555 0.95469 1.21604 0.97886 0.93539 0.94904 0.86142 1.19986 0.95989 0.95505 0.96716 1.21108 0.99714 0.90856 0.99323 1.21354 0.98518 1.00258 0.97848 1.18131 0.99150 0.80602 0.97640 1.91472 1.92989 1.43336 1.85705 1.21410 1.01628 0.92069 1.02698 1.21240 0.96736 0.97126 0.95343 1.23608 0.98841 0.99848 0.96015 1.20322 1.04214 0.94926 0.97721 0.76476 0.86195 1.20403 1.23302 0.83480 0.82288 0.82809 0.89665 0.89878 0.92348 0.92219 0.85234 0.85322 0.74275 0.89055 0.88477 0.83574 0.84193 0.83798 0.82484 0.88899 0.91179 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.83 12.77 -148.98 -1.90 -4.73 16 2 C -0.09 -0.13 2.82 71.24 0.20 0.07 16 3 Si 0.78 -1.46 29.79 68.60 2.04 0.58 16 4 C -0.08 -0.18 5.39 -19.88 -0.11 -0.28 16 5 C -0.16 0.27 8.67 22.28 0.19 0.47 16 6 C -0.07 0.24 10.04 22.25 0.22 0.47 16 7 C -0.20 0.30 9.04 22.37 0.20 0.50 16 8 C 0.12 0.50 6.69 22.51 0.15 0.65 16 9 O -0.34 -1.88 10.14 -92.49 -0.94 -2.82 16 10 C 0.06 -0.19 4.74 71.98 0.34 0.15 16 11 C -0.10 0.10 4.87 30.59 0.15 0.25 16 12 C -0.13 1.04 5.70 29.85 0.17 1.21 16 13 C 0.51 -0.26 7.83 87.66 0.69 0.42 16 14 O -0.59 -6.50 15.58 -3.02 -0.05 -6.55 16 15 N -0.70 4.51 5.26 -439.59 -2.31 2.19 16 16 C 0.11 -0.44 4.33 45.61 0.20 -0.25 16 17 H 0.08 0.15 7.47 -2.39 -0.02 0.13 16 18 C -0.13 1.00 7.29 31.12 0.23 1.22 16 19 C -0.06 0.50 3.85 -11.01 -0.04 0.45 16 20 H 0.12 -1.44 8.09 -2.39 -0.02 -1.46 16 21 C -0.08 0.34 5.29 -19.86 -0.11 0.23 16 22 C -0.09 0.21 8.54 22.26 0.19 0.40 16 23 C -0.16 -0.19 10.03 22.31 0.22 0.03 16 24 C 0.06 0.25 7.30 22.37 0.16 0.41 16 25 F -0.16 -1.21 17.27 44.97 0.78 -0.44 16 26 C -0.16 -0.01 10.03 22.31 0.22 0.22 16 27 C -0.09 0.34 9.70 22.26 0.22 0.55 16 28 C -0.14 0.71 7.27 31.21 0.23 0.93 16 29 C -0.15 -0.93 9.55 22.37 0.21 -0.71 16 30 H 0.39 -0.32 8.70 -74.06 -0.64 -0.97 16 31 H 0.12 0.08 7.96 -2.39 -0.02 0.06 16 32 H -0.28 -0.30 7.11 99.48 0.71 0.41 16 33 H -0.30 -1.84 7.11 99.48 0.71 -1.13 16 34 H 0.15 -0.91 4.87 -2.91 -0.01 -0.92 16 35 H 0.16 -1.49 8.06 -2.91 -0.02 -1.52 16 36 H 0.15 -1.10 6.30 -2.91 -0.02 -1.12 16 37 H 0.09 -0.64 7.65 -2.39 -0.02 -0.66 16 38 H 0.08 -0.60 7.67 -2.39 -0.02 -0.62 16 39 H 0.06 0.23 8.10 -2.39 -0.02 0.21 16 40 H 0.06 0.23 8.10 -2.39 -0.02 0.21 16 41 H 0.13 -1.80 8.14 -2.39 -0.02 -1.82 16 42 H 0.13 -1.77 8.14 -2.38 -0.02 -1.79 16 43 H 0.42 -5.73 8.70 -92.71 -0.81 -6.53 16 44 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.10 -0.69 7.66 -2.38 -0.02 -0.71 16 46 H 0.15 -0.81 6.72 -2.91 -0.02 -0.83 16 47 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 48 H 0.14 -0.37 8.06 -2.91 -0.02 -0.39 16 49 H 0.16 -1.48 8.05 -2.91 -0.02 -1.50 16 50 H 0.09 -0.41 6.38 -2.39 -0.02 -0.42 16 51 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 52 H 0.11 0.99 8.06 -2.91 -0.02 0.97 16 Total: 0.00 -27.20 431.21 1.11 -26.08 By element: Atomic # 1 Polarization: -21.28 SS G_CDS: -0.45 Total: -21.73 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 3.94 Total: 7.41 kcal Atomic # 7 Polarization: 4.51 SS G_CDS: -2.31 Total: 2.19 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -2.89 Total: -14.09 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.78 Total: -0.44 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.04 Total: 0.58 kcal Total: -27.20 1.11 -26.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10466350_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.996 kcal (2) G-P(sol) polarization free energy of solvation -27.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds