Wall clock time and date at job start Sat Mar 6 2021 16:11:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.33819 * 122.44895 * 2 1
4 4 C 1.50694 * 124.52372 * 359.94086 * 3 2 1
5 5 O 1.42903 * 109.47283 * 30.00208 * 4 3 2
6 6 Si 1.86301 * 109.47311 * 149.99990 * 4 3 2
7 7 S 1.70620 * 110.95136 * 179.69803 * 3 2 1
8 8 C 1.75826 * 91.56628 * 0.35357 * 7 3 2
9 9 C 1.46585 * 125.46089 * 179.90820 * 8 7 3
10 10 O 1.21703 * 119.99905 * 179.69058 * 9 8 7
11 11 N 1.34775 * 119.99753 * 359.70340 * 9 8 7
12 12 C 1.46499 * 119.99919 * 179.97438 * 11 9 8
13 13 H 1.09006 * 112.84942 * 23.79614 * 12 11 9
14 14 C 1.53781 * 113.61589 * 154.99300 * 12 11 9
15 15 C 1.53789 * 87.07831 * 89.11623 * 14 12 11
16 16 H 1.09000 * 113.60824 * 270.79861 * 15 14 12
17 17 C 1.50696 * 113.61383 * 139.98267 * 15 14 12
18 18 C 1.38241 * 119.97420 * 119.99471 * 17 15 14
19 19 C 1.38205 * 120.02377 * 179.71993 * 18 17 15
20 20 C 1.38455 * 119.97496 * 0.26259 * 19 18 17
21 21 F 1.35097 * 120.02448 * 179.97438 * 20 19 18
22 22 C 1.38464 * 119.95049 * 359.97438 * 20 19 18
23 23 C 1.38201 * 119.97214 * 0.02562 * 22 20 19
24 24 C 1.53777 * 113.61251 * 252.49224 * 12 11 9
25 25 C 1.36648 * 109.08187 * 359.65033 * 8 7 3
26 26 H 1.08998 * 109.47657 * 270.00426 * 1 2 3
27 27 H 1.09008 * 109.46987 * 30.00494 * 1 2 3
28 28 H 1.08996 * 109.47377 * 149.99922 * 1 2 3
29 29 H 1.08999 * 109.47032 * 269.99708 * 4 3 2
30 30 H 0.96697 * 113.99904 * 60.00143 * 5 4 3
31 31 H 1.48505 * 109.99724 * 58.67930 * 6 4 3
32 32 H 1.48494 * 110.00260 * 179.97438 * 6 4 3
33 33 H 0.96997 * 119.99884 * 359.97438 * 11 9 8
34 34 H 1.08991 * 113.61382 * 334.56674 * 14 12 11
35 35 H 1.09003 * 113.61277 * 203.66323 * 14 12 11
36 36 H 1.08002 * 119.99029 * 0.02562 * 18 17 15
37 37 H 1.08004 * 120.00758 * 180.23494 * 19 18 17
38 38 H 1.07994 * 120.01441 * 179.97438 * 22 20 19
39 39 H 1.07996 * 119.98812 * 180.02562 * 23 22 20
40 40 H 1.09000 * 113.61732 * 156.33485 * 24 12 11
41 41 H 1.09001 * 113.61444 * 25.43365 * 24 12 11
42 42 H 1.08001 * 123.35656 * 180.24487 * 25 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2249 1.1293 0.0000
4 6 1.6355 2.5161 -0.0013
5 8 0.3747 2.4985 0.6713
6 14 2.7917 3.6832 0.8773
7 16 3.8969 0.7892 0.0084
8 6 3.5937 -0.9427 0.0011
9 6 4.6231 -1.9863 0.0017
10 8 4.3001 -3.1597 0.0019
11 7 5.9273 -1.6463 0.0022
12 6 6.9561 -2.6892 0.0033
13 1 6.5993 -3.6363 -0.4017
14 6 8.2981 -2.2314 -0.5919
15 6 8.6820 -1.7765 0.8262
16 1 8.3896 -0.7505 1.0496
17 6 10.1160 -2.0680 1.1861
18 6 10.9692 -1.0320 1.5178
19 6 12.2830 -1.2987 1.8537
20 6 12.7460 -2.6036 1.8526
21 9 14.0303 -2.8653 2.1803
22 6 11.8919 -3.6399 1.5155
23 6 10.5786 -3.3708 1.1799
24 6 7.6897 -2.8293 1.3475
25 6 2.2446 -1.1601 0.0006
26 1 -0.3634 0.0001 1.0276
27 1 -0.3633 0.8900 -0.5140
28 1 -0.3634 -0.8899 -0.5138
29 1 1.4943 2.8499 -1.0292
30 1 0.4247 2.2106 1.5931
31 1 4.1165 3.6865 0.2063
32 1 2.2221 5.0545 0.8824
33 1 6.1846 -0.7111 0.0018
34 1 8.2031 -1.4108 -1.3029
35 1 8.9108 -3.0504 -0.9686
36 1 10.6076 -0.0143 1.5192
37 1 12.9483 -0.4895 2.1164
38 1 12.2521 -4.6580 1.5139
39 1 9.9121 -4.1790 0.9173
40 1 8.1362 -3.8117 1.5011
41 1 7.1036 -2.4914 2.2021
42 1 1.8018 -2.1451 0.0004
There are 60 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 60
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_10466350_6739946.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Mar 6 2021 16:11:04
Heat of formation + Delta-G solvation = -29.324314 kcal
Electronic energy + Delta-G solvation = -26660.152806 eV
Core-core repulsion = 22613.482487 eV
Total energy + Delta-G solvation = -4046.670319 eV
No. of doubly occupied orbitals = 60
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 348.098 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-49.80127 -41.69571 -40.54022 -39.83611 -38.67207 -37.35707 -34.62781 -32.27703
-32.18676 -31.27162 -30.29136 -27.06981 -26.87731 -25.72312 -24.55832 -24.06098
-22.67731 -21.96343 -20.49121 -20.04230 -19.52025 -18.72280 -17.78031 -17.58038
-17.31056 -17.05106 -16.68156 -16.51191 -16.48898 -16.06967 -15.97539 -15.51526
-15.40071 -14.92727 -14.66670 -14.57494 -14.49463 -14.21462 -14.03595 -13.98233
-13.80731 -13.61173 -13.47250 -13.13763 -13.09055 -12.91229 -12.49879 -12.35785
-12.27634 -11.95816 -11.82278 -11.80523 -11.38296 -11.11450 -10.77562 -10.24156
-10.12942 -9.72668 -9.51919 -9.48948 -5.24061 -0.66906 0.09197 0.20120
0.23113 0.65187 1.02678 1.28515 1.40446 1.77845 1.91894 2.12745
2.49582 3.18755 3.26854 3.30170 3.49080 3.51154 3.54283 3.67971
3.72002 3.81387 3.89187 4.02098 4.06139 4.20232 4.20625 4.32990
4.37788 4.48896 4.54550 4.57965 4.67490 4.75507 4.77351 4.83357
4.86453 4.89718 4.96735 4.99843 5.00559 5.12584 5.21289 5.35028
5.39179 5.42127 5.52605 5.86624 6.29571 6.33000 7.05214
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.096 4.096
2 C -0.091 4.091
3 C -0.235 4.235
4 C -0.028 4.028
5 O -0.529 6.529
6 Si 0.659 3.341
7 S 0.192 5.808
8 C -0.263 4.263
9 C 0.596 3.404
10 O -0.522 6.522
11 N -0.711 5.711
12 C 0.120 3.880
13 H 0.110 0.890
14 C -0.136 4.136
15 C -0.074 4.074
16 H 0.099 0.901
17 C -0.082 4.082
18 C -0.087 4.087
19 C -0.151 4.151
20 C 0.094 3.906
21 F -0.140 7.140
22 C -0.150 4.150
23 C -0.088 4.088
24 C -0.144 4.144
25 C -0.045 4.045
26 H 0.073 0.927
27 H 0.085 0.915
28 H 0.062 0.938
29 H 0.124 0.876
30 H 0.381 0.619
31 H -0.237 1.237
32 H -0.234 1.234
33 H 0.399 0.601
34 H 0.078 0.922
35 H 0.101 0.899
36 H 0.132 0.868
37 H 0.136 0.864
38 H 0.136 0.864
39 H 0.134 0.866
40 H 0.098 0.902
41 H 0.077 0.923
42 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.471 3.127 1.426 3.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.103 4.103
3 C -0.355 4.355
4 C -0.140 4.140
5 O -0.335 6.335
6 Si 0.558 3.442
7 S 0.460 5.540
8 C -0.383 4.383
9 C 0.382 3.618
10 O -0.399 6.399
11 N -0.362 5.362
12 C 0.015 3.985
13 H 0.128 0.872
14 C -0.174 4.174
15 C -0.092 4.092
16 H 0.118 0.882
17 C -0.082 4.082
18 C -0.105 4.105
19 C -0.170 4.170
20 C 0.075 3.925
21 F -0.118 7.118
22 C -0.169 4.169
23 C -0.106 4.106
24 C -0.182 4.182
25 C -0.078 4.078
26 H 0.091 0.909
27 H 0.103 0.897
28 H 0.081 0.919
29 H 0.141 0.859
30 H 0.229 0.771
31 H -0.161 1.161
32 H -0.157 1.157
33 H 0.233 0.767
34 H 0.097 0.903
35 H 0.120 0.880
36 H 0.150 0.850
37 H 0.154 0.846
38 H 0.154 0.846
39 H 0.152 0.848
40 H 0.116 0.884
41 H 0.096 0.904
42 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 0.978 4.112 0.800 4.301
hybrid contribution -0.953 -0.718 -0.424 1.266
sum 0.025 3.394 0.376 3.414
Atomic orbital electron populations
1.20648 0.88480 1.03414 1.02906 1.18729 0.98498 0.90466 1.02648
1.24470 0.98330 1.00966 1.11693 1.24470 0.92234 0.95289 1.02057
1.86535 1.27638 1.90061 1.29265 0.94815 0.78191 0.80796 0.90384
1.83006 1.03423 0.98324 1.69220 1.24538 0.97964 0.96974 1.18827
1.16925 0.81490 0.87444 0.75900 1.90864 1.81506 1.18167 1.49375
1.45520 1.05062 1.09731 1.75851 1.21886 0.86969 0.92415 0.97263
0.87244 1.23458 0.95504 1.02410 0.96055 1.21605 0.90737 1.00112
0.96734 0.88244 1.19737 0.95379 0.93176 0.99943 1.20936 0.92324
0.99410 0.97786 1.21194 0.97288 0.95371 1.03147 1.17781 0.79268
0.94165 1.01271 1.91521 1.35367 1.94832 1.90112 1.21189 0.94110
0.99174 1.02417 1.20894 0.94640 0.96630 0.98399 1.23587 0.96976
0.99815 0.97858 1.20753 0.90894 1.00199 0.95933 0.90871 0.89667
0.91894 0.85866 0.77081 1.16128 1.15719 0.76680 0.90319 0.88045
0.85009 0.84642 0.84591 0.84817 0.88383 0.90411 0.82672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 0.11 8.67 36.00 0.31 0.42 16
2 C -0.09 0.01 5.75 -106.45 -0.61 -0.60 16
3 C -0.24 0.22 5.54 -35.86 -0.20 0.02 16
4 C -0.03 0.05 2.76 36.00 0.10 0.15 16
5 O -0.53 0.96 9.85 -35.23 -0.35 0.61 16
6 Si 0.66 -1.60 31.31 -169.99 -5.32 -6.92 16
7 S 0.19 -0.26 19.78 -107.50 -2.13 -2.38 16
8 C -0.26 -0.24 6.45 -36.79 -0.24 -0.48 16
9 C 0.60 1.29 7.78 -12.90 -0.10 1.19 16
10 O -0.52 -3.02 16.44 5.19 0.09 -2.94 16
11 N -0.71 0.52 5.26 -54.35 -0.29 0.24 16
12 C 0.12 -0.15 4.32 -67.12 -0.29 -0.44 16
13 H 0.11 0.03 7.46 -51.93 -0.39 -0.36 16
14 C -0.14 0.38 7.29 -25.91 -0.19 0.19 16
15 C -0.07 0.20 3.86 -90.96 -0.35 -0.15 16
16 H 0.10 -0.36 8.09 -51.93 -0.42 -0.78 16
17 C -0.08 0.11 5.29 -104.62 -0.55 -0.45 16
18 C -0.09 0.09 9.71 -39.59 -0.38 -0.29 16
19 C -0.15 -0.03 10.03 -39.51 -0.40 -0.42 16
20 C 0.09 0.14 7.30 -39.42 -0.29 -0.15 16
21 F -0.14 -0.43 17.27 2.25 0.04 -0.39 16
22 C -0.15 -0.03 10.03 -39.51 -0.40 -0.42 16
23 C -0.09 0.09 8.60 -39.59 -0.34 -0.25 16
24 C -0.14 0.28 7.25 -25.92 -0.19 0.09 16
25 C -0.04 -0.04 9.80 -40.43 -0.40 -0.44 16
26 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16
27 H 0.08 -0.03 6.41 -51.92 -0.33 -0.37 16
28 H 0.06 -0.07 8.13 -51.93 -0.42 -0.49 16
29 H 0.12 -0.18 7.96 -51.93 -0.41 -0.59 16
30 H 0.38 -1.96 8.66 45.56 0.39 -1.56 16
31 H -0.24 0.21 7.09 56.52 0.40 0.61 16
32 H -0.23 -0.12 7.11 56.52 0.40 0.29 16
33 H 0.40 -1.11 7.81 -40.82 -0.32 -1.43 16
34 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16
35 H 0.10 -0.31 7.71 -51.93 -0.40 -0.71 16
36 H 0.13 -0.40 8.05 -52.49 -0.42 -0.83 16
37 H 0.14 -0.15 8.06 -52.48 -0.42 -0.58 16
38 H 0.14 -0.15 8.06 -52.49 -0.42 -0.57 16
39 H 0.13 -0.38 6.67 -52.49 -0.35 -0.73 16
40 H 0.10 -0.24 6.32 -51.93 -0.33 -0.57 16
41 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16
42 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16
LS Contribution 366.41 15.07 5.52 5.52
Total: 0.00 -6.90 366.41 -12.08 -18.98
By element:
Atomic # 1 Polarization: -5.56 SS G_CDS: -5.14 Total: -10.70 kcal
Atomic # 6 Polarization: 2.49 SS G_CDS: -4.51 Total: -2.02 kcal
Atomic # 7 Polarization: 0.52 SS G_CDS: -0.29 Total: 0.24 kcal
Atomic # 8 Polarization: -2.06 SS G_CDS: -0.26 Total: -2.32 kcal
Atomic # 9 Polarization: -0.43 SS G_CDS: 0.04 Total: -0.39 kcal
Atomic # 14 Polarization: -1.60 SS G_CDS: -5.32 Total: -6.92 kcal
Atomic # 16 Polarization: -0.26 SS G_CDS: -2.13 Total: -2.38 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -6.90 -12.08 -18.98 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_10466350_6739946.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.343 kcal
(2) G-P(sol) polarization free energy of solvation -6.900 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.081 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.324 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds