Wall clock time and date at job start Sat Mar 6 2021 13:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86296 * 109.47298 * 2 1 4 4 C 1.50704 * 109.47150 * 119.99986 * 2 1 3 5 5 C 1.37938 * 119.92308 * 64.99633 * 4 2 1 6 6 C 1.39589 * 119.87748 * 179.97438 * 5 4 2 7 7 C 1.47852 * 120.14442 * 180.02562 * 6 5 4 8 8 O 1.21551 * 119.99689 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00210 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00013 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.85018 * 25.32651 * 10 9 7 12 12 C 1.53781 * 113.61612 * 156.52839 * 10 9 7 13 13 C 1.53772 * 87.08404 * 89.11583 * 12 10 9 14 14 H 1.09002 * 113.61203 * 270.80211 * 13 12 10 15 15 C 1.50702 * 113.61852 * 139.98118 * 13 12 10 16 16 C 1.38331 * 120.00610 * 119.72588 * 15 13 12 17 17 Cl 1.73607 * 120.01412 * 359.97271 * 16 15 13 18 18 C 1.38376 * 119.97230 * 179.70589 * 16 15 13 19 19 C 1.38189 * 119.98547 * 0.59144 * 18 16 15 20 20 C 1.38264 * 120.01070 * 359.70282 * 19 18 16 21 21 C 1.38218 * 120.02847 * 359.97438 * 20 19 18 22 22 C 1.53782 * 113.61353 * 254.13155 * 10 9 7 23 23 C 1.39549 * 119.72041 * 0.02562 * 6 5 4 24 24 C 1.38068 * 119.83925 * 0.25251 * 23 6 5 25 25 Br 1.89106 * 119.93714 * 179.74777 * 24 23 6 26 26 C 1.38366 * 119.91968 * 244.98408 * 4 2 1 27 27 H 0.96693 * 113.99930 * 300.00397 * 1 2 3 28 28 H 1.09003 * 109.47586 * 239.99782 * 2 1 3 29 29 H 1.48502 * 110.00220 * 178.67665 * 3 2 1 30 30 H 1.48499 * 109.99958 * 300.00067 * 3 2 1 31 31 H 1.08004 * 120.06126 * 359.96685 * 5 4 2 32 32 H 0.96998 * 120.00472 * 359.97438 * 9 7 6 33 33 H 1.09003 * 113.61427 * 203.66638 * 12 10 9 34 34 H 1.09002 * 113.61367 * 334.56361 * 12 10 9 35 35 H 1.08000 * 120.00328 * 180.27506 * 18 16 15 36 36 H 1.07996 * 119.99609 * 179.73094 * 19 18 16 37 37 H 1.08003 * 119.98429 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.99212 * 180.02562 * 21 20 19 39 39 H 1.09005 * 113.61448 * 25.43398 * 22 10 9 40 40 H 1.09003 * 113.61433 * 156.32802 * 22 10 9 41 41 H 1.08002 * 120.07736 * 179.97438 * 23 6 5 42 42 H 1.07997 * 119.86287 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6843 -2.0573 1.3965 6 6 2.1505 -2.7145 2.5363 7 6 1.8896 -4.1582 2.7199 8 8 1.2674 -4.7753 1.8775 9 7 2.3415 -4.7899 3.8213 10 6 2.0834 -6.2205 4.0030 11 1 1.9320 -6.7464 3.0602 12 6 3.0862 -6.9133 4.9407 13 6 2.1421 -6.5419 6.0963 14 1 2.3511 -5.5659 6.5344 15 6 1.9969 -7.6286 7.1303 16 6 2.3607 -7.3874 8.4430 17 17 2.9852 -5.8333 8.8996 18 6 2.2213 -8.3838 9.3931 19 6 1.7304 -9.6228 9.0277 20 6 1.3728 -9.8650 7.7143 21 6 1.5055 -8.8681 6.7662 22 6 1.0052 -6.5230 5.0570 23 6 2.8640 -2.0031 3.5019 24 6 3.0997 -0.6541 3.3267 25 35 4.0600 0.3141 4.6368 26 6 2.6395 -0.0101 2.1910 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8900 29 1 3.5346 1.7702 0.0322 30 1 1.5615 2.4678 -1.2085 31 1 1.1311 -2.6024 0.6459 32 1 2.8382 -4.2977 4.4934 33 1 3.1703 -7.9871 4.7735 34 1 4.0541 -6.4145 4.9901 35 1 2.5010 -8.1947 10.4190 36 1 1.6257 -10.4019 9.7682 37 1 0.9888 -10.8334 7.4293 38 1 1.2255 -9.0578 5.7404 39 1 0.2941 -5.7093 5.2002 40 1 0.5213 -7.4903 4.9215 41 1 3.2270 -2.5058 4.3862 42 1 2.8308 1.0442 2.0559 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:13:25 Heat of formation + Delta-G solvation = 18.815998 kcal Electronic energy + Delta-G solvation = -28279.060862 eV Core-core repulsion = 24070.699616 eV Total energy + Delta-G solvation = -4208.361246 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.007 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.91215 -41.06103 -40.01496 -38.81150 -37.68305 -37.40920 -34.93236 -33.63509 -33.04906 -31.66828 -31.61468 -30.47573 -27.09900 -26.75705 -26.62995 -25.15276 -23.68106 -22.85403 -22.60070 -21.69404 -20.24996 -19.21203 -18.32971 -17.83805 -17.66002 -17.26540 -16.84485 -16.48161 -16.40501 -16.33648 -16.06972 -15.67603 -15.25149 -15.17697 -14.98038 -14.80660 -14.75936 -14.41921 -14.32948 -14.14554 -13.54350 -13.39331 -13.30356 -13.03741 -12.96915 -12.69527 -12.47883 -12.23533 -12.16561 -11.98791 -11.96721 -11.79909 -11.56390 -11.46408 -11.28137 -11.22386 -10.57390 -10.38286 -10.13640 -9.93392 -9.83474 -9.58329 -5.06038 -0.54260 -0.18413 0.18171 0.28851 0.41509 1.17017 1.20634 1.48179 1.59171 1.86684 1.95029 2.43425 2.63011 3.25128 3.31631 3.38361 3.53799 3.58413 3.64699 3.78224 3.83841 3.86091 3.93884 3.94074 4.10112 4.16034 4.18654 4.26213 4.38961 4.39971 4.47097 4.59830 4.71373 4.73722 4.74793 4.79238 4.87704 4.90390 4.96721 5.00436 5.05399 5.09900 5.29870 5.33739 5.39731 5.49412 5.55956 5.86755 6.31134 6.70958 6.98970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.074 4.074 3 Si 0.770 3.230 4 C -0.116 4.116 5 C -0.029 4.029 6 C -0.136 4.136 7 C 0.563 3.437 8 O -0.569 6.569 9 N -0.695 5.695 10 C 0.116 3.884 11 H 0.094 0.906 12 C -0.122 4.122 13 C -0.077 4.077 14 H 0.104 0.896 15 C -0.070 4.070 16 C -0.050 4.050 17 Cl -0.075 7.075 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.138 4.138 23 C -0.045 4.045 24 C -0.099 4.099 25 Br -0.028 7.028 26 C -0.059 4.059 27 H 0.397 0.603 28 H 0.113 0.887 29 H -0.277 1.277 30 H -0.293 1.293 31 H 0.132 0.868 32 H 0.413 0.587 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.159 0.841 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -0.108 4.479 4.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.184 4.184 3 Si 0.674 3.326 4 C -0.117 4.117 5 C -0.048 4.048 6 C -0.140 4.140 7 C 0.352 3.648 8 O -0.448 6.448 9 N -0.346 5.346 10 C 0.011 3.989 11 H 0.112 0.888 12 C -0.160 4.160 13 C -0.095 4.095 14 H 0.122 0.878 15 C -0.070 4.070 16 C -0.076 4.076 17 Cl -0.046 7.046 18 C -0.140 4.140 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.177 4.177 23 C -0.066 4.066 24 C -0.178 4.178 25 Br 0.057 6.943 26 C -0.078 4.078 27 H 0.247 0.753 28 H 0.130 0.870 29 H -0.204 1.204 30 H -0.221 1.221 31 H 0.150 0.850 32 H 0.251 0.749 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.176 0.824 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.518 0.222 3.483 3.806 hybrid contribution 0.105 -0.516 -0.086 0.533 sum 1.623 -0.293 3.398 3.777 Atomic orbital electron populations 1.86514 1.16824 1.82149 1.50533 1.25243 0.85610 1.10992 0.96530 0.93886 0.78355 0.74788 0.85553 1.20344 0.99847 0.94009 0.97548 1.21265 0.94117 0.93781 0.95654 1.19854 1.03652 0.93115 0.97338 1.18310 0.78311 0.86801 0.81427 1.90801 1.41849 1.68007 1.44188 1.45511 1.56680 1.10156 1.22296 1.21897 0.97310 0.80634 0.99052 0.88755 1.23373 0.97656 1.02381 0.92565 1.21740 0.97882 0.97426 0.92450 0.87782 1.19688 0.98961 0.96139 0.92257 1.21043 1.03805 0.87906 0.94890 1.98362 1.85755 1.28054 1.92408 1.21297 1.00140 0.92908 0.99678 1.21441 0.98137 0.96548 0.97416 1.21595 0.98483 1.00295 0.93028 1.21256 0.98866 0.91707 1.01100 1.23604 0.96330 1.03421 0.94308 1.21445 0.94449 0.92308 0.98364 1.21739 1.04137 0.95209 0.96746 1.96866 1.72639 1.73340 1.51406 1.21380 0.94472 1.00620 0.91316 0.75280 0.86962 1.20377 1.22063 0.85044 0.74937 0.87303 0.89579 0.84370 0.83383 0.83405 0.83435 0.91418 0.87655 0.82362 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.13 12.83 -148.98 -1.91 -1.78 16 2 C -0.07 0.11 2.80 71.24 0.20 0.31 16 3 Si 0.77 -2.72 29.79 68.60 2.04 -0.67 16 4 C -0.12 0.11 5.35 -19.90 -0.11 0.01 16 5 C -0.03 -0.08 9.22 22.52 0.21 0.13 16 6 C -0.14 -0.20 5.87 -20.09 -0.12 -0.31 16 7 C 0.56 2.55 7.77 86.79 0.67 3.22 16 8 O -0.57 -7.27 15.97 -3.88 -0.06 -7.34 16 9 N -0.69 1.07 5.21 -442.90 -2.31 -1.24 16 10 C 0.12 -0.20 4.30 45.52 0.20 0.00 16 11 H 0.09 0.16 7.50 -2.39 -0.02 0.15 16 12 C -0.12 0.60 7.29 31.12 0.23 0.83 16 13 C -0.08 0.25 3.65 -10.93 -0.04 0.21 16 14 H 0.10 -0.31 6.58 -2.39 -0.02 -0.33 16 15 C -0.07 0.06 5.29 -19.84 -0.11 -0.04 16 16 C -0.05 -0.06 6.32 22.32 0.14 0.08 16 17 Cl -0.07 -0.09 27.16 -2.72 -0.07 -0.17 16 18 C -0.12 0.00 9.83 22.29 0.22 0.22 16 19 C -0.12 0.27 10.05 22.26 0.22 0.50 16 20 C -0.12 0.38 10.05 22.27 0.22 0.60 16 21 C -0.11 0.31 8.61 22.26 0.19 0.51 16 22 C -0.14 0.34 7.27 31.21 0.23 0.57 16 23 C -0.05 0.13 9.28 22.55 0.21 0.34 16 24 C -0.10 0.24 6.22 22.28 0.14 0.38 16 25 Br -0.03 0.07 33.69 -20.37 -0.69 -0.61 16 26 C -0.06 0.18 8.40 22.35 0.19 0.37 16 27 H 0.40 -3.44 8.70 -74.06 -0.64 -4.08 16 28 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 29 H -0.28 -0.18 7.11 99.48 0.71 0.53 16 30 H -0.29 -1.19 7.11 99.48 0.71 -0.49 16 31 H 0.13 0.77 7.65 -2.91 -0.02 0.74 16 32 H 0.41 -2.71 6.74 -92.71 -0.62 -3.33 16 33 H 0.11 -0.66 7.72 -2.39 -0.02 -0.68 16 34 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 36 H 0.15 -0.94 8.06 -2.91 -0.02 -0.96 16 37 H 0.15 -1.09 8.06 -2.91 -0.02 -1.12 16 38 H 0.15 -0.95 6.66 -2.91 -0.02 -0.97 16 39 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.11 -0.43 6.32 -2.39 -0.02 -0.45 16 41 H 0.16 -1.22 6.40 -2.91 -0.02 -1.24 16 42 H 0.16 -1.08 4.89 -2.91 -0.01 -1.09 16 Total: 0.00 -17.91 384.01 -0.23 -18.14 By element: Atomic # 1 Polarization: -14.10 SS G_CDS: -0.12 Total: -14.22 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 2.90 Total: 7.90 kcal Atomic # 7 Polarization: 1.07 SS G_CDS: -2.31 Total: -1.24 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.97 Total: -9.12 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.04 Total: -0.67 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.07 Total: -0.17 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -0.69 Total: -0.61 kcal Total: -17.91 -0.23 -18.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.956 kcal (2) G-P(sol) polarization free energy of solvation -17.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds