Wall clock time and date at job start Sat Mar 6 2021 13:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47000 * 2 1 4 4 C 1.50695 * 109.47133 * 120.00227 * 2 1 3 5 5 C 1.34832 * 125.65326 * 65.00038 * 4 2 1 6 6 C 1.40797 * 107.05171 * 179.97438 * 5 4 2 7 7 C 1.36104 * 106.73292 * 0.02562 * 6 5 4 8 8 C 1.47570 * 125.94608 * 179.97438 * 7 6 5 9 9 C 1.39564 * 119.95731 * 180.02562 * 8 7 6 10 10 C 1.38316 * 119.81562 * 179.97438 * 9 8 7 11 11 O 1.35679 * 120.13578 * 179.97438 * 10 9 8 12 12 C 1.40363 * 119.72359 * 0.02562 * 10 9 8 13 13 C 1.47295 * 120.04809 * 180.02562 * 12 10 9 14 14 O 1.21633 * 119.99744 * 359.97438 * 13 12 10 15 15 N 1.34771 * 120.00585 * 179.72611 * 13 12 10 16 16 C 1.46499 * 120.00560 * 180.27795 * 15 13 12 17 17 H 1.09004 * 112.84380 * 334.66464 * 16 15 13 18 18 C 1.53775 * 113.61537 * 105.85784 * 16 15 13 19 19 C 1.54055 * 86.98513 * 89.16559 * 18 16 15 20 20 H 1.08999 * 113.60897 * 270.88200 * 19 18 16 21 21 C 1.50697 * 113.69477 * 139.99194 * 19 18 16 22 22 C 1.38334 * 120.00506 * 142.19621 * 21 19 18 23 23 Cl 1.73594 * 120.01338 * 359.96870 * 22 21 19 24 24 C 1.38380 * 119.97052 * 179.69818 * 22 21 19 25 25 C 1.38192 * 119.98689 * 0.58726 * 24 22 21 26 26 C 1.38263 * 120.01045 * 359.70979 * 25 24 22 27 27 C 1.38215 * 120.02929 * 359.96775 * 26 25 24 28 28 C 1.53774 * 87.07434 * 25.43088 * 19 18 16 29 29 C 1.39921 * 119.90722 * 0.27358 * 12 10 9 30 30 C 1.36380 * 120.18474 * 359.41664 * 29 12 10 31 31 O 1.34232 * 125.65088 * 245.25913 * 4 2 1 32 32 H 0.96702 * 113.99607 * 299.99841 * 1 2 3 33 33 H 1.08998 * 109.46795 * 240.00484 * 2 1 3 34 34 H 1.48493 * 110.00237 * 300.00246 * 3 2 1 35 35 H 1.48496 * 109.99993 * 61.32495 * 3 2 1 36 36 H 1.08001 * 126.47748 * 0.02562 * 5 4 2 37 37 H 1.07999 * 126.63227 * 179.97438 * 6 5 4 38 38 H 1.08007 * 120.09419 * 0.02562 * 9 8 7 39 39 H 0.96705 * 114.00273 * 270.02200 * 11 10 9 40 40 H 0.97000 * 119.99371 * 0.27064 * 15 13 12 41 41 H 1.09005 * 113.61646 * 203.66669 * 18 16 15 42 42 H 1.09001 * 113.62209 * 334.57148 * 18 16 15 43 43 H 1.07996 * 120.00769 * 180.27529 * 24 22 21 44 44 H 1.07999 * 119.99420 * 179.72484 * 25 24 22 45 45 H 1.08007 * 119.98468 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.99210 * 180.02562 * 27 26 25 47 47 H 1.09010 * 113.60990 * 220.02454 * 28 19 18 48 48 H 1.09001 * 113.69628 * 89.13580 * 28 19 18 49 49 H 1.08001 * 119.90241 * 179.72544 * 29 12 10 50 50 H 1.08005 * 119.86077 * 180.32053 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7568 -2.0180 1.5092 6 6 2.3810 -2.2631 2.7472 7 6 2.9080 -1.0786 3.1616 8 6 3.6571 -0.8543 4.4131 9 6 4.1436 0.4183 4.7156 10 6 4.8448 0.6253 5.8898 11 8 5.3212 1.8597 6.1900 12 6 5.0625 -0.4472 6.7687 13 6 5.8078 -0.2347 8.0213 14 8 6.2355 0.8708 8.2943 15 7 6.0114 -1.2638 8.8673 16 6 6.7474 -1.0511 10.1160 17 1 7.4334 -0.2055 10.0641 18 6 5.8511 -1.0414 11.3654 19 6 6.0694 -2.5649 11.4341 20 1 5.3363 -3.1370 10.8654 21 6 6.2602 -3.0868 12.8349 22 6 5.7169 -4.3058 13.1989 23 17 4.8146 -5.2344 12.0426 24 6 5.8979 -4.7873 14.4836 25 6 6.6107 -4.0446 15.4055 26 6 7.1482 -2.8234 15.0428 27 6 6.9735 -2.3451 13.7578 28 6 7.3883 -2.3305 10.6790 29 6 4.5749 -1.7196 6.4510 30 6 3.8785 -1.9182 5.2953 31 8 2.6225 -0.1453 2.2328 32 1 -0.3933 0.4417 0.7651 33 1 1.7923 -0.5138 -0.8900 34 1 1.5614 2.4679 -1.2084 35 1 1.5880 2.4585 1.2243 36 1 1.2371 -2.7410 0.8980 37 1 2.4312 -3.2080 3.2677 38 1 3.9724 1.2394 4.0352 39 1 6.2143 2.0279 5.8593 40 1 5.6705 -2.1454 8.6494 41 1 6.2819 -0.5002 12.2078 42 1 4.8193 -0.7556 11.1606 43 1 5.4778 -5.7409 14.7671 44 1 6.7482 -4.4182 16.4094 45 1 7.7049 -2.2431 15.7638 46 1 7.3939 -1.3913 13.4750 47 1 7.5969 -3.0848 9.9201 48 1 8.2397 -2.1412 11.3327 49 1 4.7462 -2.5457 7.1252 50 1 3.5001 -2.9015 5.0577 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_10565092_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 13:13:55 Heat of formation + Delta-G solvation = -5.401210 kcal Electronic energy + Delta-G solvation = -36598.575920 eV Core-core repulsion = 31551.402116 eV Total energy + Delta-G solvation = -5047.173805 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.111 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.75228 -41.86131 -41.04838 -39.83268 -38.66108 -38.19774 -37.86577 -37.40225 -34.84980 -34.20725 -33.32096 -31.77351 -31.66091 -31.27569 -30.41437 -27.26573 -26.72953 -26.16015 -24.56542 -24.07748 -23.69295 -22.78003 -22.36369 -22.06812 -21.38000 -20.25449 -19.66038 -18.92889 -18.61337 -18.18890 -17.69959 -17.53143 -17.27997 -16.82093 -16.67940 -16.47565 -16.23734 -16.12480 -15.94872 -15.83077 -15.49130 -15.13587 -14.96769 -14.75793 -14.73292 -14.47512 -14.41207 -14.21172 -13.98626 -13.80751 -13.66048 -13.56727 -13.45638 -13.33288 -12.97197 -12.95407 -12.72390 -12.68010 -12.46805 -12.20150 -12.15042 -11.91492 -11.76217 -11.51255 -11.24840 -11.14561 -10.95084 -10.85507 -10.63949 -10.13605 -9.96434 -9.82765 -9.57497 -9.02849 -5.00236 -0.80839 0.13374 0.18792 0.29395 0.62971 1.11870 1.17494 1.42035 1.44023 1.68985 1.87396 1.90097 2.00260 2.62274 2.64128 3.00748 3.20332 3.34876 3.40701 3.57229 3.61293 3.61722 3.71315 3.85938 3.86902 3.95752 3.97811 3.99415 4.11076 4.16833 4.21384 4.35894 4.39699 4.40653 4.42850 4.60039 4.64471 4.69538 4.72662 4.76200 4.77738 4.83115 4.89388 4.91154 4.98425 5.01671 5.05040 5.08619 5.13382 5.20469 5.30442 5.41997 5.42300 5.50042 5.52050 5.60050 5.87235 5.94886 6.29937 6.44350 6.70485 7.14348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.033 4.033 3 Si 0.764 3.236 4 C -0.051 4.051 5 C -0.181 4.181 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.026 3.974 9 C -0.152 4.152 10 C 0.162 3.838 11 O -0.495 6.495 12 C -0.179 4.179 13 C 0.559 3.441 14 O -0.560 6.560 15 N -0.697 5.697 16 C 0.119 3.881 17 H 0.092 0.908 18 C -0.141 4.141 19 C -0.076 4.076 20 H 0.105 0.895 21 C -0.070 4.070 22 C -0.049 4.049 23 Cl -0.074 7.074 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.112 4.112 28 C -0.120 4.120 29 C -0.052 4.052 30 C -0.110 4.110 31 O -0.176 6.176 32 H 0.389 0.611 33 H 0.158 0.842 34 H -0.280 1.280 35 H -0.298 1.298 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.139 0.861 39 H 0.410 0.590 40 H 0.413 0.587 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.169 0.831 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 -6.041 0.669 7.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.143 4.143 3 Si 0.668 3.332 4 C -0.101 4.101 5 C -0.200 4.200 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.025 3.975 9 C -0.171 4.171 10 C 0.116 3.884 11 O -0.308 6.308 12 C -0.183 4.183 13 C 0.348 3.652 14 O -0.439 6.439 15 N -0.350 5.350 16 C 0.013 3.987 17 H 0.110 0.890 18 C -0.180 4.180 19 C -0.094 4.094 20 H 0.123 0.877 21 C -0.070 4.070 22 C -0.076 4.076 23 Cl -0.045 7.045 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.158 4.158 29 C -0.071 4.071 30 C -0.128 4.128 31 O -0.074 6.074 32 H 0.239 0.761 33 H 0.176 0.824 34 H -0.206 1.206 35 H -0.225 1.225 36 H 0.185 0.815 37 H 0.199 0.801 38 H 0.157 0.843 39 H 0.270 0.730 40 H 0.251 0.749 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.165 0.835 47 H 0.107 0.893 48 H 0.125 0.875 49 H 0.186 0.814 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.163 -4.435 0.502 5.470 hybrid contribution -1.167 -0.492 0.225 1.286 sum 1.996 -4.927 0.728 5.366 Atomic orbital electron populations 1.86639 1.17258 1.80360 1.50024 1.24474 0.83512 1.11989 0.94296 0.93659 0.90489 0.72107 0.76923 1.23162 1.00670 0.94186 0.92077 1.21838 1.03996 0.95789 0.98396 1.22243 1.00798 0.98939 0.97125 1.20569 1.04594 0.87869 0.91373 1.17944 0.95332 0.93937 0.90254 1.21573 1.00969 0.97639 0.96902 1.18468 0.94589 0.84146 0.91191 1.84728 1.37394 1.28416 1.80296 1.20507 1.05588 0.95304 0.96867 1.18202 0.79172 0.84258 0.83570 1.90823 1.51603 1.25030 1.76445 1.45484 1.56973 1.12302 1.20211 1.21832 0.94283 0.99687 0.82864 0.88993 1.23613 1.00711 0.95173 0.98459 1.21738 0.99461 0.96227 0.91997 0.87677 1.19698 0.97733 0.92862 0.96738 1.21031 1.00377 0.94450 0.91723 1.98357 1.73628 1.72765 1.59749 1.21300 0.99808 1.01252 0.91671 1.21439 0.97026 0.94844 1.00254 1.21591 0.98951 0.96152 0.96754 1.21255 0.98347 1.00404 0.92972 1.23353 0.96629 0.96263 0.99527 1.21142 0.94063 0.95129 0.96730 1.21035 0.99286 0.99422 0.93032 1.83939 1.58167 1.38425 1.26873 0.76075 0.82443 1.20636 1.22494 0.81535 0.80140 0.84343 0.73006 0.74919 0.87911 0.91833 0.84339 0.83399 0.83457 0.83530 0.89336 0.87452 0.81404 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.49 12.88 -148.98 -1.92 -2.41 16 2 C -0.03 0.05 2.98 71.23 0.21 0.27 16 3 Si 0.76 -0.49 32.11 68.60 2.20 1.71 16 4 C -0.05 -0.04 6.20 24.90 0.15 0.11 16 5 C -0.18 0.06 10.78 22.11 0.24 0.30 16 6 C -0.17 0.26 10.26 22.40 0.23 0.49 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.01 5.87 -20.08 -0.12 -0.10 16 9 C -0.15 -0.49 9.65 22.61 0.22 -0.27 16 10 C 0.16 0.82 6.71 22.81 0.15 0.97 16 11 O -0.50 -3.66 11.56 -68.97 -0.80 -4.46 16 12 C -0.18 -0.41 5.89 -19.97 -0.12 -0.53 16 13 C 0.56 2.87 7.75 86.63 0.67 3.54 16 14 O -0.56 -7.48 14.76 16.86 0.25 -7.23 16 15 N -0.70 1.14 5.21 -443.43 -2.31 -1.17 16 16 C 0.12 -0.18 4.30 45.51 0.20 0.02 16 17 H 0.09 0.20 7.50 -2.39 -0.02 0.18 16 18 C -0.14 0.24 7.27 31.21 0.23 0.47 16 19 C -0.08 0.24 3.65 -10.92 -0.04 0.20 16 20 H 0.11 -0.35 6.57 -2.39 -0.02 -0.36 16 21 C -0.07 0.06 5.29 -19.84 -0.11 -0.05 16 22 C -0.05 -0.05 6.31 22.33 0.14 0.09 16 23 Cl -0.07 -0.06 27.15 -2.72 -0.07 -0.13 16 24 C -0.12 0.01 9.83 22.29 0.22 0.23 16 25 C -0.12 0.27 10.05 22.26 0.22 0.49 16 26 C -0.12 0.36 10.05 22.27 0.22 0.58 16 27 C -0.11 0.29 8.62 22.26 0.19 0.48 16 28 C -0.12 0.63 7.28 31.12 0.23 0.85 16 29 C -0.05 0.24 9.47 22.24 0.21 0.45 16 30 C -0.11 0.51 9.48 22.25 0.21 0.72 16 31 O -0.18 -0.58 8.79 -6.10 -0.05 -0.63 16 32 H 0.39 -1.45 8.70 -74.06 -0.64 -2.09 16 33 H 0.16 -0.90 7.96 -2.39 -0.02 -0.92 16 34 H -0.28 -1.30 7.11 99.48 0.71 -0.59 16 35 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 36 H 0.17 -0.52 8.06 -2.91 -0.02 -0.54 16 37 H 0.18 -1.35 7.24 -2.91 -0.02 -1.37 16 38 H 0.14 0.43 7.90 -2.91 -0.02 0.41 16 39 H 0.41 -0.03 9.06 -74.05 -0.67 -0.70 16 40 H 0.41 -3.10 6.71 -92.71 -0.62 -3.72 16 41 H 0.10 -0.32 6.33 -2.38 -0.02 -0.34 16 42 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.14 -0.30 8.06 -2.91 -0.02 -0.33 16 44 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 45 H 0.15 -1.05 8.06 -2.91 -0.02 -1.08 16 46 H 0.15 -0.89 6.67 -2.91 -0.02 -0.90 16 47 H 0.09 -0.60 8.14 -2.38 -0.02 -0.62 16 48 H 0.11 -0.67 7.73 -2.39 -0.02 -0.69 16 49 H 0.17 -2.00 6.38 -2.91 -0.02 -2.02 16 50 H 0.17 -1.80 6.96 -2.91 -0.02 -1.82 16 Total: 0.00 -24.61 435.61 0.19 -24.42 By element: Atomic # 1 Polarization: -18.76 SS G_CDS: -0.84 Total: -19.60 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 3.74 Total: 9.50 kcal Atomic # 7 Polarization: 1.14 SS G_CDS: -2.31 Total: -1.17 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.52 Total: -14.73 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: 2.20 Total: 1.71 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.07 Total: -0.13 kcal Total: -24.61 0.19 -24.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_10565092_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.018 kcal (2) G-P(sol) polarization free energy of solvation -24.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds